Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8429615.1

Orthogroup ID

OG0009932

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1483

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8429615.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 508 bp

gagttcaggagaagccatttggggctccgagggctgaggctgccggccgatgccaacaccgctccgattctgcctaccgagaatctgcctgaggattttgattggagagagcatggagctgttactgaagtcaaaaatcagggttcgtgcgggtcgtgctggagtttcagcaccacaggagctttggaaggtgcccacttccttgcgactggggagcttgtgagcctcagcgagcagcagcttgtggattgcgatcacgagtgcgatccagaggaggcaggttcatgcgacgctggttgcaatggtgggctcatgaacagcgcctttgagtacacactcaaagctggtggacttatgaaggaaaaagattatccatacactggtactgatcgtggaacctgcaagtttgacaagaccaaaattgcagccaaagtttccaacttcagtgttgtctcccttgatgaagatcaaattgctgccaatcttgttaagaatggccctcttgctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

169

Amino Acids

18.15

Weight (kDa)

4.71

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21430 AT4G39090
fragaria_vesca	FvH4_2g09940
malus_domestica	MD05G1058800.v1.1 MD10G1066900.v1.1
prunus_persica	Prupe.8G088700_v2.0.a1 Prupe.8G088700_v2.0.a1
pyrus_communis	pycom05g05010 pycom10g05230
rosa_chinensis	RchiOBHm_Chr6g0266691
rosa_laevigata	RLG00000007587 RLG00000014084
rosa_multiflora	Rmu_co8429615.1_g000001 Rmu_sc0006413.1_g000010 Rmu_sc0012140.1_g000025
rosa_roxburghii	Rroxscaffold_7G00201540
rosa_rugosa	Rorug06G0027100
rosa_samantha	Rh6BG148000 Rh6DG132600
rosa_wichuraiana	Rw6G012670 Rw6G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	269, 407
AccB1I	GGYRCC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	2 cut(s)	60, 150
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	2 cut(s)	147, 427
AfaI	GTAC	2 cut(s)	332, 385
AfiI	CCNNNNNNNGG	1 cut(s)	380
AluBI	AGCT	5 cut(s)	119, 182, 217, 241, 344
AluI	AGCT	5 cut(s)	119, 182, 217, 241, 344
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	2 cut(s)	45, 496
ApeKI	GCWGC	5 cut(s)	40, 235, 238, 425, 476
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	497
AxyI	CCTNAGG	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	2 cut(s)	27, 312
BauI	CACGAG	1 cut(s)	257
BbvCI	CCTCAGC	2 cut(s)	35, 227
BbvI	GCAGC	5 cut(s)	27, 247, 250, 437, 463
BcoDI	GTCTC	1 cut(s)	457
BfoI	RGCGCY	1 cut(s)	324
BfuAI	ACCTGC	2 cut(s)	269, 407
BisI	GCNGC	5 cut(s)	41, 236, 239, 426, 477
BlsI	GCNGC	5 cut(s)	42, 237, 240, 427, 478
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	3 cut(s)	26, 193, 397
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	40
BmuI	ACTGGG	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	181
Bpu10I	CCTNAGC	2 cut(s)	35, 227
BsaBI	GATNNNNATC	2 cut(s)	252, 465
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	214, 385
Bse21I	CCTNAGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	307
Bse8I	GATNNNNATC	2 cut(s)	252, 465
BseDI	CCNNGG	1 cut(s)	28
BseJI	GATNNNNATC	2 cut(s)	252, 465
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	3 cut(s)	26, 81, 241
BseNI	ACTGG	2 cut(s)	214, 385
BseRI	GAGGAG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	196
BseX3I	CGGCCG	1 cut(s)	45
BseXI	GCAGC	5 cut(s)	27, 247, 250, 437, 463
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	47, 498
BshNI	GGYRCC	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	47, 498
Bsp1286I	GDGCHC	3 cut(s)	27, 196, 312
Bsp143I	GATC	4 cut(s)	253, 265, 388, 466
BspACI	CCGC	2 cut(s)	60, 150
BspANI	GGCC	2 cut(s)	47, 498
BspCNI	CTCAG	3 cut(s)	27, 82, 240
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	3 cut(s)	26, 193, 397
BspMI	ACCTGC	2 cut(s)	269, 407
BspPI	GGATC	1 cut(s)	260
BspT107I	GGYRCC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	2 cut(s)	214, 385
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	4 cut(s)	253, 265, 388, 466
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	45, 233
BstDEI	CTNAG	3 cut(s)	35, 90, 227
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	4 cut(s)	256, 268, 391, 469
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	4 cut(s)	253, 265, 388, 466
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 40, 59, 156
BstSLI	GKGCMC	1 cut(s)	196
BstV1I	GCAGC	5 cut(s)	27, 247, 250, 437, 463
BstZI	CGGCCG	1 cut(s)	45
Bsu36I	CCTNAGG	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	47, 498
BtsIMutI	CAGTG	2 cut(s)	378, 451
BveI	ACCTGC	2 cut(s)	269, 407
Cac8I	GCNNGC	2 cut(s)	45, 233
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	1 cut(s)	323
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	497
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	331, 384
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	3 cut(s)	113, 285, 313
CviQI	GTAC	2 cut(s)	331, 384
DdeI	CTNAG	3 cut(s)	35, 90, 227
DpnI	GATC	4 cut(s)	255, 267, 390, 468
DpnII	GATC	4 cut(s)	253, 265, 388, 466
EaeI	YGGCCR	1 cut(s)	45
EagI	CGGCCG	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	45
Eco24I	GRGCYC	2 cut(s)	27, 312
Eco52I	CGGCCG	1 cut(s)	45
Eco57I	CTGAAG	2 cut(s)	147, 427
Eco81I	CCTNAGG	1 cut(s)	90
EcoT38I	GRGCYC	2 cut(s)	27, 312
FaeI	CATG	3 cut(s)	116, 288, 316
FaiI	YATR	5 cut(s)	114, 286, 314, 356, 376
FatI	CATG	3 cut(s)	112, 284, 312
FauI	CCCGC	1 cut(s)	143
Fnu4HI	GCNGC	5 cut(s)	41, 236, 239, 426, 477
FriOI	GRGCYC	2 cut(s)	27, 312
Fsp4HI	GCNGC	5 cut(s)	41, 236, 239, 426, 477
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	5 cut(s)	41, 236, 239, 426, 477
GsuI	CTGGAG	1 cut(s)	181
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	47, 498
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	3 cut(s)	116, 288, 316
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HinfI	GANTC	2 cut(s)	67, 82
HpaII	CCGG	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	333, 350
Hpy188I	TCNGA	2 cut(s)	29, 66
Hpy188III	TCNNGA	4 cut(s)	7, 257, 269, 313
Hpy8I	GTNNAC	2 cut(s)	333, 350
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	182, 352
HpyCH4V	TGCA	3 cut(s)	300, 402, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 40, 59, 156
HpyF3I	CTNAG	3 cut(s)	35, 90, 227
Hsp92II	CATG	3 cut(s)	116, 288, 316
HspAI	GCGC	1 cut(s)	321
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Kzo9I	GATC	4 cut(s)	253, 265, 388, 466
LmnI	GCTCC	5 cut(s)	30, 67, 116, 179, 214
Lsp1109I	GCAGC	5 cut(s)	27, 247, 250, 437, 463
LweI	GCATC	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	4 cut(s)	255, 267, 390, 468
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	4 cut(s)	253, 265, 388, 466
MboII	GAAGA	1 cut(s)	476
MhlI	GDGCHC	3 cut(s)	27, 196, 312
MluCI	AATT	2 cut(s)	420, 471
MmeI	TCCRAC	1 cut(s)	462
MnlI	CCTC	6 cut(s)	23, 30, 85, 236, 265, 268
MroNI	GCCGGC	1 cut(s)	43
MseI	TTAA	1 cut(s)	489
MspI	CCGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	4 cut(s)	31, 40, 59, 156
NaeI	GCCGGC	1 cut(s)	45
NdeII	GATC	4 cut(s)	253, 265, 388, 466
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	3 cut(s)	116, 288, 316
NlaIV	GGNNCC	3 cut(s)	26, 193, 397
PagI	TCATGA	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	152
PdiI	GCCGGC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	67, 82
PflMI	CCANNNNNTGG	1 cut(s)	380
PkrI	GCNGC	5 cut(s)	42, 237, 240, 427, 478
PspN4I	GGNNCC	3 cut(s)	26, 193, 397
PspPI	GGNCC	1 cut(s)	497
RsaI	GTAC	2 cut(s)	332, 385
RsaNI	GTAC	2 cut(s)	331, 384
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	5 cut(s)	41, 236, 239, 426, 477
Sau3AI	GATC	4 cut(s)	253, 265, 388, 466
Sau96I	GGNCC	1 cut(s)	497
SduI	GDGCHC	3 cut(s)	27, 196, 312
SetI	ASST	8 cut(s)	121, 184, 193, 219, 243, 283, 346, 401
SfaNI	GCATC	1 cut(s)	40
Sse9I	AATT	2 cut(s)	420, 471
SsiI	CCGC	2 cut(s)	60, 150
TasI	AATT	2 cut(s)	420, 471
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	2 cut(s)	67, 82
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	2 cut(s)	385, 451
TseI	GCWGC	5 cut(s)	40, 235, 238, 425, 476
TspDTI	ATGAA	4 cut(s)	273, 329, 371, 477
TspRI	CASTG	2 cut(s)	385, 451
Van91I	CCANNNNNTGG	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.