Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009932

Physical Location & Seq

Genomic Coordinates Forward (+)

3273484 .. 3274134

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0027100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCCAAGGATCAGCAGGGGTCGGCGAAAGATAGCCATGAGAAAGATAGAGAATGAAACCAATCTTCAGGTGACATTCTCTAAACGCCGCACTGGTCTGTTCAAAAAGGCCAGCGAGCTGTGCACCCTTAGTGGTGCAGAGATGGCCATTGTAGTTTTCTCGCCGGGCAAAAAACCATACTCTTTCGGCCACCCGAATGTAGAATCTATCATTGAGCGTTATCTGTCAGGGTCTCATCAGCCGCTCAACAACTCGAGCACAGCCCAAGCTGCCCGACTCATTGAAGAAGCTAATCGCAACGCGACGCTGAGTCGTCTCAATGAAGAGTTAACTTTGCTTAATGAAATGCGCGACGAGGAGCTGAGGAAGGGCGAGGAGCTGCTGCTGAGGGAGAGGGCTGGCCAACATTTGCATTGGCGAGAAAAGCCAAAGGAGGAGTTGGATACGCAACAACTGATGTGGCTGAAGATGGAGATGCAGGAGCTGCATCGCCGGGTAGCTCAGGAGACTCAGTTCAGGCAGCAGTTAGCTCTATTTGATACCACCGGTAACTTGATGAATGAGCAGCACTTCACAAACCCTATGGCGCCATTTTTTGCAGGGATTCCTTCAACTTCAAGCCAAGGCGCGATGAATAACGATGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

216

Amino Acids

24.84

Weight (kDa)

9.09

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	2.9e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21430 AT4G39090
fragaria_vesca	FvH4_2g09940
malus_domestica	MD05G1058800.v1.1 MD10G1066900.v1.1
prunus_persica	Prupe.8G088700_v2.0.a1 Prupe.8G088700_v2.0.a1
pyrus_communis	pycom05g05010 pycom10g05230
rosa_chinensis	RchiOBHm_Chr6g0266691
rosa_laevigata	RLG00000007587 RLG00000014084
rosa_multiflora	Rmu_co8429615.1_g000001 Rmu_sc0006413.1_g000010 Rmu_sc0012140.1_g000025
rosa_roxburghii	Rroxscaffold_7G00201540
rosa_rugosa	Rorug06G0027100
rosa_samantha	Rh6BG148000 Rh6DG132600
rosa_wichuraiana	Rw6G012670 Rw6G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	586
AccBSI	CCGCTC	1 cut(s)	244
AccII	CGCG	3 cut(s)	302, 351, 629
AciI	CCGC	2 cut(s)	88, 242
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	3 cut(s)	144, 187, 400
AcuI	CTGAAG	2 cut(s)	50, 485
AcyI	GRCGYC	1 cut(s)	587
AgeI	ACCGGT	1 cut(s)	545
AgsI	TTSAA	4 cut(s)	103, 284, 612, 618
AhdI	GACNNNNNGTC	1 cut(s)	309
AloI	GAACNNNNNNTCC	2 cut(s)	497, 529
AluBI	AGCT	8 cut(s)	118, 269, 290, 361, 379, 484, 500, 530
AluI	AGCT	8 cut(s)	118, 269, 290, 361, 379, 484, 500, 530
Alw21I	GWGCWC	2 cut(s)	125, 260
Alw26I	GTCTC	3 cut(s)	237, 320, 500
Alw44I	GTGCAC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	17
AlwNI	CAGNNNCTG	1 cut(s)	484
Ama87I	CYCGRG	1 cut(s)	253
AoxI	GGCC	4 cut(s)	108, 144, 187, 400
ApaLI	GTGCAC	1 cut(s)	121
ApeKI	GCWGC	6 cut(s)	269, 379, 382, 484, 520, 565
AsiGI	ACCGGT	1 cut(s)	545
AspLEI	GCGC	3 cut(s)	351, 589, 629
AsuC2I	CCSGG	2 cut(s)	165, 494
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	125
BalI	TGGCCA	2 cut(s)	146, 402
BanI	GGYRCC	1 cut(s)	586
Bbv12I	GWGCWC	2 cut(s)	125, 260
BbvCI	CCTCAGC	2 cut(s)	362, 386
BbvI	GCAGC	6 cut(s)	256, 366, 369, 471, 532, 577
BccI	CCATC	2 cut(s)	136, 463
BciVI	GTATCC	1 cut(s)	436
BcnI	CCSGG	2 cut(s)	165, 494
BcoDI	GTCTC	3 cut(s)	237, 320, 500
BfoI	RGCGCY	1 cut(s)	590
BfuI	GTATCC	1 cut(s)	436
BisI	GCNGC	8 cut(s)	88, 242, 270, 380, 383, 485, 521, 566
BlsI	GCNGC	8 cut(s)	89, 243, 271, 381, 384, 486, 522, 567
Bme1390I	CCNGG	2 cut(s)	165, 494
BmeRI	GACNNNNNGTC	1 cut(s)	309
BmeT110I	CYCGRG	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	588
BmrFI	CCNGG	2 cut(s)	165, 494
BmsI	GCATC	3 cut(s)	465, 496, 631
Bpu10I	CCTNAGC	3 cut(s)	362, 386, 501
BpuMI	CCSGG	2 cut(s)	165, 494
BsaHI	GRCGYC	1 cut(s)	587
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	5, 622
BsaWI	WCCGGW	1 cut(s)	545
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	5, 622
BseMII	CTCAG	5 cut(s)	299, 353, 377, 515, 524
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	3 cut(s)	371, 389, 449
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	6 cut(s)	256, 366, 369, 471, 532, 577
BsgI	GTGCAG	1 cut(s)	156
Bsh1236I	CGCG	3 cut(s)	302, 351, 629
BshFI	GGCC	4 cut(s)	110, 146, 189, 402
BshNI	GGYRCC	1 cut(s)	586
BshTI	ACCGGT	1 cut(s)	545
BsiHKAI	GWGCWC	2 cut(s)	125, 260
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	3 cut(s)	164, 493, 546
BsmAI	GTCTC	3 cut(s)	237, 320, 500
BsmBI	CGTCTC	1 cut(s)	320
BsnI	GGCC	4 cut(s)	110, 146, 189, 402
Bso31I	GGTCTC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	125, 260
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	88, 242
BspANI	GGCC	4 cut(s)	110, 146, 189, 402
BspCNI	CTCAG	5 cut(s)	300, 354, 378, 514, 523
BspFNI	CGCG	3 cut(s)	302, 351, 629
BspLI	GGNNCC	1 cut(s)	588
BspPI	GGATC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	586
BspTNI	GGTCTC	1 cut(s)	237
BsrBI	CCGCTC	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	2 cut(s)	5, 622
BssMI	GATC	1 cut(s)	9
BssNI	GRCGYC	1 cut(s)	587
BssT1I	CCWWGG	2 cut(s)	5, 622
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	587
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstC8I	GCNNGC	3 cut(s)	112, 116, 400
BstDEI	CTNAG	6 cut(s)	128, 308, 362, 386, 501, 510
BstFNI	CGCG	3 cut(s)	302, 351, 629
BstH2I	RGCGCY	1 cut(s)	590
BstHHI	GCGC	3 cut(s)	351, 589, 629
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	3 cut(s)	237, 320, 500
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	5 cut(s)	120, 143, 269, 424, 484
BstSCI	CCNGG	2 cut(s)	163, 492
BstSLI	GKGCMC	1 cut(s)	125
BstUI	CGCG	3 cut(s)	302, 351, 629
BstV1I	GCAGC	6 cut(s)	256, 366, 369, 471, 532, 577
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	4 cut(s)	110, 146, 189, 402
BtgZI	GCGATG	2 cut(s)	473, 644
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	3 cut(s)	112, 116, 400
CaiI	CAGNNNCTG	1 cut(s)	484
CfoI	GCGC	3 cut(s)	351, 589, 629
Cfr10I	RCCGGY	1 cut(s)	545
CseI	GACGC	1 cut(s)	313
CspAI	ACCGGT	1 cut(s)	545
CspCI	CAANNNNNGTGG	2 cut(s)	440, 475
CviAII	CATG	1 cut(s)	37
DdeI	CTNAG	6 cut(s)	128, 308, 362, 386, 501, 510
DinI	GGCGCC	1 cut(s)	588
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
DriI	GACNNNNNGTC	1 cut(s)	309
EaeI	YGGCCR	3 cut(s)	144, 187, 400
Eam1104I	CTCTTC	1 cut(s)	318
Eam1105I	GACNNNNNGTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	5, 622
Eco31I	GGTCTC	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	50, 485
Eco88I	CYCGRG	1 cut(s)	253
EcoT14I	CCWWGG	2 cut(s)	5, 622
EgeI	GGCGCC	1 cut(s)	588
EheI	GGCGCC	1 cut(s)	588
ErhI	CCWWGG	2 cut(s)	5, 622
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	1 cut(s)	40
FaiI	YATR	3 cut(s)	38, 178, 584
FatI	CATG	1 cut(s)	36
Fnu4HI	GCNGC	8 cut(s)	88, 242, 270, 380, 383, 485, 521, 566
Fsp4HI	GCNGC	8 cut(s)	88, 242, 270, 380, 383, 485, 521, 566
GlaI	GCGC	3 cut(s)	350, 588, 628
GluI	GCNGC	8 cut(s)	88, 242, 270, 380, 383, 485, 521, 566
HaeII	RGCGCY	1 cut(s)	590
HaeIII	GGCC	4 cut(s)	110, 146, 189, 402
HapII	CCGG	3 cut(s)	164, 493, 546
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	3 cut(s)	351, 589, 629
Hin1I	GRCGYC	1 cut(s)	587
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	3 cut(s)	349, 587, 627
HinP1I	GCGC	3 cut(s)	349, 587, 627
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	5 cut(s)	203, 276, 310, 508, 604
HpaI	GTTAAC	1 cut(s)	330
HpaII	CCGG	3 cut(s)	164, 493, 546
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	2 cut(s)	123, 330
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	2 cut(s)	123, 330
Hpy99I	CGWCG	2 cut(s)	307, 356
HpyAV	CCTTC	2 cut(s)	361, 618
HpyCH4V	TGCA	6 cut(s)	123, 137, 412, 478, 487, 599
HpyF10VI	GCNNNNNNNGC	5 cut(s)	120, 143, 269, 424, 484
HpyF3I	CTNAG	6 cut(s)	128, 308, 362, 386, 501, 510
Hsp92I	GRCGYC	1 cut(s)	587
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	3 cut(s)	349, 587, 627
KasI	GGCGCC	1 cut(s)	586
KspAI	GTTAAC	1 cut(s)	330
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	3 cut(s)	358, 376, 481
Lsp1109I	GCAGC	6 cut(s)	256, 366, 369, 471, 532, 577
LweI	GCATC	3 cut(s)	465, 496, 631
MaeIII	GTNAC	2 cut(s)	70, 548
MalI	GATC	1 cut(s)	11
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	1 cut(s)	9
MboII	GAAGA	4 cut(s)	56, 296, 335, 478
MhlI	GDGCHC	2 cut(s)	125, 260
MlsI	TGGCCA	2 cut(s)	146, 402
MluCI	AATT	1 cut(s)	646
MluNI	TGGCCA	2 cut(s)	146, 402
Mly113I	GGCGCC	1 cut(s)	587
MlyI	GAGTC	3 cut(s)	270, 319, 502
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	6 cut(s)	349, 357, 367, 381, 387, 427
Mox20I	TGGCCA	2 cut(s)	146, 402
MscI	TGGCCA	2 cut(s)	146, 402
MseI	TTAA	2 cut(s)	329, 339
MslI	CAYNNNNRTG	1 cut(s)	195
Msp20I	TGGCCA	2 cut(s)	146, 402
MspI	CCGG	3 cut(s)	164, 493, 546
MspR9I	CCNGG	2 cut(s)	165, 494
MvnI	CGCG	3 cut(s)	302, 351, 629
MwoI	GCNNNNNNNGC	5 cut(s)	120, 143, 269, 424, 484
NarI	GGCGCC	1 cut(s)	587
NciI	CCSGG	2 cut(s)	165, 494
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	588
NmuCI	GTSAC	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	203, 604
PinAI	ACCGGT	1 cut(s)	545
PkrI	GCNGC	8 cut(s)	89, 243, 271, 381, 384, 486, 522, 567
PleI	GAGTC	3 cut(s)	270, 318, 502
PluTI	GGCGCC	1 cut(s)	590
PpsI	GAGTC	3 cut(s)	270, 318, 502
PspN4I	GGNNCC	1 cut(s)	588
PspXI	VCTCGAGB	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	484
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	329, 339
SatI	GCNGC	8 cut(s)	88, 242, 270, 380, 383, 485, 521, 566
Sau3AI	GATC	1 cut(s)	9
SchI	GAGTC	3 cut(s)	270, 319, 502
ScrFI	CCNGG	2 cut(s)	165, 494
SduI	GDGCHC	2 cut(s)	125, 260
SetI	ASST	9 cut(s)	72, 120, 271, 292, 363, 381, 486, 502, 532
SfaNI	GCATC	3 cut(s)	465, 496, 631
SfoI	GGCGCC	1 cut(s)	588
Sfr274I	CTCGAG	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	1 cut(s)	646
SsiI	CCGC	2 cut(s)	88, 242
SspDI	GGCGCC	1 cut(s)	586
StyD4I	CCNGG	2 cut(s)	163, 492
StyI	CCWWGG	2 cut(s)	5, 622
TaqI	TCGA	1 cut(s)	254
TasI	AATT	1 cut(s)	646
TauI	GCSGC	2 cut(s)	90, 244
TfiI	GAWTC	2 cut(s)	203, 604
Tru1I	TTAA	2 cut(s)	329, 339
Tru9I	TTAA	2 cut(s)	329, 339
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	6 cut(s)	269, 379, 382, 484, 520, 565
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	5 cut(s)	69, 336, 357, 572, 647
TspRI	CASTG	1 cut(s)	97
VneI	GTGCAC	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.