Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009932

Physical Location & Seq

Genomic Coordinates Reverse (-)

18215542 .. 18217616

Gene Structure 2075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGATCGTCTTAAGCTTTATTTCTCCGTTTTCGTTTTGTCTTTCTTTATCGTCTCGGTTTCGTCGTCTGATGTCAACGACGGCGATGATCTCGTGATCCGTCAGGTGGTTGGTGGAGCCGAGCCTCAGGTTTTGACCTCAGAGGATCACTTTTCTCTCTTCAAGCGGAAGTTCGGGAAGGTCTACGCTTCCAACGAGGAGCATGACTATAGATTCTCGGTTTTCAAAGCGAATCTCAGGCGAGCGAGGCGTCACCAGAAGTTGGATCCGTCGGCGACTCATGGTGTTACGCAGTTCTCAGATCTGACTCGGTCTGAGTTCCGTAAGAAGCACTTGGGGGTTAGAAGTGGCTTTAAGCTTCCTAAAGATGCCAACAAGGCTCCGATTCTCCCTACCGAAAATCTCCCTGAGGATTTTGATTGGAGAGATCATGGCGCCGTTACTCCCGTCAAAAATCAGGGATCTTGCGGCTCTTGCTGGAGTTTCAGCGCCACTGGAGCTTTGGAAGGTGCTAACTTCCTCGCTACCGGCAAACTCGTCAGCCTCAGCGAACAACAGCTCGTCGACTGTGATCACGAGTGTGATCCCGAGGAGGCAGATTCCTGCGACTCTGGTTGCAATGGTGGGCTAATGAACAGCGCTTTTGAATACACCCTCAAAACCGGAGGGCTCATGAAAGAAGAAGACTATCCTTACACCGGAAAGGACGGCAAGACCTGCAAGCTAGACAAGTCCAAGATCGTTGCCTCTGTCTCCAACTTCAGTGTTATCTCCATTGATGAAGAACAGATTGCTGCAAACCTTGTCAAGAACGGACCTCTTGCTGTAGCCATCAACGCTGGCTATATGCAGACTTACATTGGAGGAGTCTCATGCCCTTACATATGCACCAGGAGGCTCAACCACGGTGTCTTATTGGTTGGCTATGGAGCGGCAGGTTACGCTCCGGCTAGGTTCAAGGAGAAGCCTTACTGGATCATCAAGAACTCGTGGGGAGAGACTTGGGGTGAAAATGGTTTCTACAAAATCTGCAAAGGCCGTAACATTTGTGGTGTTGACAGTATGGTCTCCACTGTTGCAGCCACCGTCTCAACCACCGCCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

368

Amino Acids

40.42

Weight (kDa)

6.75

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	51 - 107	2.2e-16	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	135 - 358	2.5e-75	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21430 AT4G39090
fragaria_vesca	FvH4_2g09940
malus_domestica	MD05G1058800.v1.1 MD10G1066900.v1.1
prunus_persica	Prupe.8G088700_v2.0.a1 Prupe.8G088700_v2.0.a1
pyrus_communis	pycom05g05010 pycom10g05230
rosa_chinensis	RchiOBHm_Chr6g0266691
rosa_laevigata	RLG00000007587 RLG00000014084
rosa_multiflora	Rmu_co8429615.1_g000001 Rmu_sc0006413.1_g000010 Rmu_sc0012140.1_g000025
rosa_roxburghii	Rroxscaffold_7G00201540
rosa_rugosa	Rorug06G0027100
rosa_samantha	Rh6BG148000 Rh6DG132600
rosa_wichuraiana	Rw6G012670 Rw6G012820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1064
Acc36I	ACCTGC	2 cut(s)	725, 926
AccB1I	GGYRCC	1 cut(s)	434
AccB7I	CCANNNNNTGG	1 cut(s)	262
AccBSI	CCGCTC	1 cut(s)	932
AccI	GTMKAC	2 cut(s)	183, 564
AciI	CCGC	4 cut(s)	166, 468, 932, 1098
AclWI	GGATC	8 cut(s)	12, 91, 153, 260, 273, 469, 578, 983
AcuI	CTGAAG	1 cut(s)	745
AcyI	GRCGYC	2 cut(s)	250, 435
AfeI	AGCGCT	1 cut(s)	640
AfiI	CCNNNNNNNGG	3 cut(s)	106, 262, 698
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	4 cut(s)	163, 226, 647, 958
AjnI	CCWGG	1 cut(s)	890
AleI	CACNNNNGTG	1 cut(s)	579
AluBI	AGCT	5 cut(s)	16, 358, 500, 559, 724
AluI	AGCT	5 cut(s)	16, 358, 500, 559, 724
Alw26I	GTCTC	6 cut(s)	58, 757, 874, 992, 1072, 1093
AlwI	GGATC	8 cut(s)	12, 91, 153, 260, 273, 469, 578, 983
Ama87I	CYCGRG	1 cut(s)	587
Aor51HI	AGCGCT	1 cut(s)	640
AoxI	GGCC	1 cut(s)	1036
ApeKI	GCWGC	2 cut(s)	794, 1079
AspLEI	GCGC	3 cut(s)	437, 491, 641
AspS9I	GGNCC	1 cut(s)	815
AsuHPI	GGTGA	2 cut(s)	245, 1019
AvaI	CYCGRG	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	815
AxyI	CCTNAGG	2 cut(s)	126, 408
BamHI	GGATCC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	672
BauI	CACGAG	3 cut(s)	92, 575, 988
BbsI	GAAGAC	1 cut(s)	690
BbvCI	CCTCAGC	1 cut(s)	545
BbvI	GCAGC	2 cut(s)	781, 1091
BccI	CCATC	1 cut(s)	839
BceAI	ACGGC	4 cut(s)	97, 422, 724, 1023
BciT130I	CCWGG	1 cut(s)	892
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	6 cut(s)	58, 757, 874, 992, 1072, 1093
BfaI	CTAG	2 cut(s)	725, 951
BfmI	CTRYAG	2 cut(s)	208, 825
BfoI	RGCGCY	3 cut(s)	438, 492, 642
BfrI	CTTAAG	1 cut(s)	11
BfuAI	ACCTGC	2 cut(s)	725, 926
BglI	GCCNNNNNGGC	1 cut(s)	377
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	4 cut(s)	469, 795, 933, 1080
BlsI	GCNGC	4 cut(s)	470, 796, 934, 1081
Bme1390I	CCNGG	1 cut(s)	892
Bme18I	GGWCC	1 cut(s)	815
BmeT110I	CYCGRG	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	815
BmiI	GGNNCC	4 cut(s)	118, 267, 381, 436
BmrFI	CCNGG	1 cut(s)	892
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	690
BpmI	CTGGAG	2 cut(s)	499, 516
Bpu10I	CCTNAGC	1 cut(s)	545
BsaHI	GRCGYC	2 cut(s)	250, 435
BsaI	GGTCTC	1 cut(s)	1072
BsaJI	CCNNGG	2 cut(s)	588, 904
BsaWI	WCCGGW	2 cut(s)	662, 698
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 262, 698
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	2 cut(s)	499, 977
Bse21I	CCTNAGG	2 cut(s)	126, 408
Bse3DI	GCAATG	1 cut(s)	625
BseBI	CCWGG	1 cut(s)	892
BseDI	CCNNGG	2 cut(s)	588, 904
BseLI	CCNNNNNNNGG	3 cut(s)	106, 262, 698
BseMI	GCAATG	1 cut(s)	625
BseMII	CTCAG	7 cut(s)	140, 153, 250, 306, 312, 399, 559
BseNI	ACTGG	2 cut(s)	499, 977
BseRI	GAGGAG	3 cut(s)	212, 605, 879
BseXI	GCAGC	2 cut(s)	781, 1091
BshFI	GGCC	1 cut(s)	1038
BshNI	GGYRCC	1 cut(s)	434
BsiHKCI	CYCGRG	1 cut(s)	587
BsiSI	CCGG	4 cut(s)	528, 663, 699, 947
BslI	CCNNNNNNNGG	3 cut(s)	106, 262, 698
BsmAI	GTCTC	6 cut(s)	58, 757, 874, 992, 1072, 1093
BsmBI	CGTCTC	2 cut(s)	58, 1093
BsnI	GGCC	1 cut(s)	1038
Bso31I	GGTCTC	1 cut(s)	1072
BsoBI	CYCGRG	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	672
BspACI	CCGC	4 cut(s)	166, 468, 932, 1098
BspANI	GGCC	1 cut(s)	1038
BspCNI	CTCAG	7 cut(s)	139, 152, 249, 307, 311, 400, 558
BspHI	TCATGA	1 cut(s)	672
BspLI	GGNNCC	4 cut(s)	118, 267, 381, 436
BspMI	ACCTGC	2 cut(s)	725, 926
BspPI	GGATC	8 cut(s)	12, 91, 153, 260, 273, 469, 578, 983
BspT107I	GGYRCC	1 cut(s)	434
BspTI	CTTAAG	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	1072
BsrBI	CCGCTC	1 cut(s)	932
BsrDI	GCAATG	1 cut(s)	625
BsrFI	RCCGGY	1 cut(s)	527
BsrI	ACTGG	2 cut(s)	499, 977
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	2 cut(s)	588, 904
BssNI	GRCGYC	2 cut(s)	250, 435
BssSI	CACGAG	3 cut(s)	92, 575, 988
Bst2BI	CACGAG	3 cut(s)	92, 575, 988
Bst2UI	CCWGG	1 cut(s)	892
Bst4CI	ACNGT	5 cut(s)	569, 908, 1061, 1075, 1087
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	2 cut(s)	250, 435
BstAFI	CTTAAG	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	717
BstC8I	GCNNGC	3 cut(s)	243, 722, 841
BstDEI	CTNAG	7 cut(s)	126, 139, 236, 298, 315, 408, 545
BstDSI	CCRYGG	1 cut(s)	904
BstH2I	RGCGCY	3 cut(s)	438, 492, 642
BstHHI	GCGC	3 cut(s)	437, 491, 641
BstMAI	GTCTC	6 cut(s)	58, 757, 874, 992, 1072, 1093
BstMWI	GCNNNNNNNGC	7 cut(s)	247, 377, 474, 497, 717, 836, 941
BstNI	CCWGG	1 cut(s)	892
BstSCI	CCNGG	1 cut(s)	890
BstSFI	CTRYAG	2 cut(s)	208, 825
BstV1I	GCAGC	2 cut(s)	781, 1091
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	3 cut(s)	265, 301, 461
BstYI	RGATCY	3 cut(s)	265, 301, 461
Bsu36I	CCTNAGG	2 cut(s)	126, 408
BsuRI	GGCC	1 cut(s)	1038
BtgI	CCRYGG	1 cut(s)	904
BtgZI	GCGATG	1 cut(s)	99
BtsIMutI	CAGTG	3 cut(s)	492, 769, 1071
BveI	ACCTGC	2 cut(s)	725, 926
Cac8I	GCNNGC	3 cut(s)	243, 722, 841
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	3 cut(s)	437, 491, 641
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	1 cut(s)	815
CseI	GACGC	1 cut(s)	239
CviAII	CATG	5 cut(s)	203, 281, 431, 673, 873
DdeI	CTNAG	7 cut(s)	126, 139, 236, 298, 315, 408, 545
DinI	GGCGCC	1 cut(s)	436
DrdI	GACNNNNNNGTC	1 cut(s)	1064
DseDI	GACNNNNNNGTC	1 cut(s)	1064
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	672
Eco31I	GGTCTC	1 cut(s)	1072
Eco47I	GGWCC	1 cut(s)	815
Eco47III	AGCGCT	1 cut(s)	640
Eco57I	CTGAAG	1 cut(s)	745
Eco81I	CCTNAGG	2 cut(s)	126, 408
Eco88I	CYCGRG	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	890
EcoT38I	GRGCYC	1 cut(s)	672
EgeI	GGCGCC	1 cut(s)	436
EheI	GGCGCC	1 cut(s)	436
Esp3I	CGTCTC	2 cut(s)	58, 1093
FaeI	CATG	5 cut(s)	206, 284, 434, 676, 876
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	5 cut(s)	202, 280, 430, 672, 872
FauNDI	CATATG	1 cut(s)	884
FbaI	TGATCA	1 cut(s)	571
FblI	GTMKAC	2 cut(s)	183, 564
Fnu4HI	GCNGC	4 cut(s)	469, 795, 933, 1080
FriOI	GRGCYC	1 cut(s)	672
Fsp4HI	GCNGC	4 cut(s)	469, 795, 933, 1080
FspBI	CTAG	2 cut(s)	725, 951
GlaI	GCGC	3 cut(s)	436, 490, 640
GluI	GCNGC	4 cut(s)	469, 795, 933, 1080
GsuI	CTGGAG	2 cut(s)	499, 516
HaeII	RGCGCY	3 cut(s)	438, 492, 642
HaeIII	GGCC	1 cut(s)	1038
HapII	CCGG	4 cut(s)	528, 663, 699, 947
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	3 cut(s)	437, 491, 641
Hin1I	GRCGYC	2 cut(s)	250, 435
Hin1II	CATG	5 cut(s)	206, 284, 434, 676, 876
Hin6I	GCGC	3 cut(s)	435, 489, 639
HinP1I	GCGC	3 cut(s)	435, 489, 639
HincII	GTYRAC	3 cut(s)	76, 565, 1057
HindII	GTYRAC	3 cut(s)	76, 565, 1057
HindIII	AAGCTT	2 cut(s)	14, 356
HinfI	GANTC	8 cut(s)	213, 232, 277, 307, 385, 599, 608, 867
HpaII	CCGG	4 cut(s)	528, 663, 699, 947
HphI	GGTGA	2 cut(s)	245, 1019
Hpy166II	GTNNAC	4 cut(s)	76, 184, 565, 1057
Hpy188I	TCNGA	6 cut(s)	70, 142, 301, 306, 316, 384
Hpy188III	TCNNGA	7 cut(s)	94, 175, 575, 587, 673, 808, 982
Hpy8I	GTNNAC	4 cut(s)	76, 184, 565, 1057
Hpy99I	CGWCG	4 cut(s)	67, 83, 274, 566
HpyAV	CCTTC	2 cut(s)	172, 500
HpyCH4III	ACNGT	5 cut(s)	569, 908, 1061, 1075, 1087
HpyCH4V	TGCA	7 cut(s)	618, 720, 797, 850, 888, 1032, 1079
HpyF10VI	GCNNNNNNNGC	7 cut(s)	247, 377, 474, 497, 717, 836, 941
HpyF3I	CTNAG	7 cut(s)	126, 139, 236, 298, 315, 408, 545
Hsp92I	GRCGYC	2 cut(s)	250, 435
Hsp92II	CATG	5 cut(s)	206, 284, 434, 676, 876
HspAI	GCGC	3 cut(s)	435, 489, 639
KasI	GGCGCC	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	571
LmnI	GCTCC	6 cut(s)	116, 199, 385, 497, 929, 949
Lsp1109I	GCAGC	2 cut(s)	781, 1091
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	2 cut(s)	725, 951
MaeIII	GTNAC	5 cut(s)	251, 286, 439, 938, 1040
MbiI	CCGCTC	1 cut(s)	932
MboII	GAAGA	4 cut(s)	151, 692, 695, 794
MflI	RGATCY	3 cut(s)	265, 301, 461
MhlI	GDGCHC	1 cut(s)	672
Mly113I	GGCGCC	1 cut(s)	435
MlyI	GAGTC	4 cut(s)	271, 301, 602, 876
MmeI	TCCRAC	3 cut(s)	216, 243, 780
MseI	TTAA	3 cut(s)	12, 354, 1105
MslI	CAYNNNNRTG	1 cut(s)	579
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	4 cut(s)	528, 663, 699, 947
MspR9I	CCNGG	1 cut(s)	892
MvaI	CCWGG	1 cut(s)	892
MwoI	GCNNNNNNNGC	7 cut(s)	247, 377, 474, 497, 717, 836, 941
NarI	GGCGCC	1 cut(s)	435
NdeI	CATATG	1 cut(s)	884
NlaIII	CATG	5 cut(s)	206, 284, 434, 676, 876
NlaIV	GGNNCC	4 cut(s)	118, 267, 381, 436
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	251
OliI	CACNNNNGTG	1 cut(s)	579
PagI	TCATGA	1 cut(s)	672
PcsI	WCGNNNNNNNCGW	2 cut(s)	62, 192
PfeI	GAWTC	4 cut(s)	213, 232, 385, 599
PflFI	GACNNNGTC	1 cut(s)	310
PflMI	CCANNNNNTGG	1 cut(s)	262
PkrI	GCNGC	4 cut(s)	470, 796, 934, 1081
PleI	GAGTC	4 cut(s)	271, 301, 602, 875
PluTI	GGCGCC	1 cut(s)	438
PpsI	GAGTC	4 cut(s)	271, 301, 602, 875
Psp6I	CCWGG	1 cut(s)	890
PspGI	CCWGG	1 cut(s)	890
PspN4I	GGNNCC	4 cut(s)	118, 267, 381, 436
PspPI	GGNCC	1 cut(s)	815
PsuI	RGATCY	3 cut(s)	265, 301, 461
PsyI	GACNNNGTC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	579
SalI	GTCGAC	1 cut(s)	563
SaqAI	TTAA	3 cut(s)	12, 354, 1105
SatI	GCNGC	4 cut(s)	469, 795, 933, 1080
Sau96I	GGNCC	1 cut(s)	815
SchI	GAGTC	4 cut(s)	271, 301, 602, 876
ScrFI	CCNGG	1 cut(s)	892
SduI	GDGCHC	1 cut(s)	672
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	2 cut(s)	208, 825
SfoI	GGCGCC	1 cut(s)	436
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	579
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SsiI	CCGC	4 cut(s)	166, 468, 932, 1098
SspDI	GGCGCC	1 cut(s)	434
SspMI	CTAG	2 cut(s)	725, 951
StyD4I	CCNGG	1 cut(s)	890
TaaI	ACNGT	5 cut(s)	569, 908, 1061, 1075, 1087
TaqI	TCGA	1 cut(s)	564
TaqII	GACCGA	1 cut(s)	300
TauI	GCSGC	2 cut(s)	471, 935
TfiI	GAWTC	4 cut(s)	213, 232, 385, 599
Tru1I	TTAA	3 cut(s)	12, 354, 1105
Tru9I	TTAA	3 cut(s)	12, 354, 1105
TscAI	CASTG	3 cut(s)	499, 769, 1078
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	2 cut(s)	794, 1079
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	3 cut(s)	647, 689, 795
TspGWI	ACGGA	5 cut(s)	16, 89, 258, 311, 828
TspRI	CASTG	3 cut(s)	499, 769, 1078
Tth111I	GACNNNGTC	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	262
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmiI	GTMKAC	2 cut(s)	183, 564
XspI	CTAG	2 cut(s)	725, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.