Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003742

Physical Location & Seq

Genomic Coordinates Reverse (-)

9207432 .. 9210231

Gene Structure 2800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGGGAATGCTTGTTGTGTTGCTACTCGAGACAAAATGGTTGTGCCTAATACATCAGCAGTCGAGAATTTTCAAAGAAACAATGTGAGGTATTCTCCTAACTGGAGCTTCCGATGGGATAATAGAGGAGGACGCGTGGCAGGGGAAGAGACCTCTGTTAGTTTGTTATCTGATCGGATTAGTCGTAACGATGTCTCTGATGTCAAATCTGAAACTGCTCTTGTATCATCACAAGGTTCTCCTTTGGACAATTTTCAGACGCAGTCATGGCAGAAATCTCCTGCTTCTGATCAATCATTTTCAAGAATTGCCTCTATTGACTCTGTCTCTGAACAGATCACCCAAAAAACAAATGATTCAACCGACCCTACTTATTATCCATCTCCTGCAAAACTGTCTCTTTCATTGGCTTCTCAACCATCATCCTTCTCAGTGTCACCACTGTCAAGTCAGTCCCACTTGCCAATGCCACCTGCAAGTTCATCCCAATTAAAGCTGACACCGCCCCCTCGTCTATCAAAGCAAGTCTCATATGGTCAAATCTTTGGATTCACCTCACCGAGCAGAAGCTCAGCAACTGAAGAGAGGCTGGGGAATGAATCTCAGTCTGATGGTTGGTCCATGCAAGCTTTTTCTGAAATGATGGCGTATTCTCGCAGAGAGTCTTGCTCTTACGATAACGAGTGCTTTGGGCTTCGTCGTGACAAGATAGACAATCTTGGAAGTAGAAAGTCCAATGATCAGCAAAACTGTGGTGCTTGCTCGAGATCCTTGTCTGAGAAATCTTTGTTGAGTAGCCAAAAAATCTTTGCCACTAACGAGCTCTCCGTAGCTGCGATTCTAGCATGTGGGCACGTCTATCATTCAGAGTGTTTAGAGCAGATGACACCTGAAATCGACAAATTCGATCCTTCTTGTCCCATCTGCACACTGGGTGAGAAGAAAACATTCAAACTGTCGGAAAAAGCATTAAAGGCAGATTTGGAAATGAAAGCTAGACACAACAAGAGACTAAGAAACCGCGTTGTGGACAGCGATGAATTTGTCAAGTTTAATAACAACCACGAAGCGGCAGTAGGATACAAAGGTAAAACCCCAAAGCTGATATCAAGTTCAAGCTTGAGAAGCTATTCCCCAAAGCCTTTCCTTGCTAGACACTTCTCTTTCGGGTCCAGAAGTAATAGTGTTAAATCCCCAAAAGAGATTCATTCCCCGAGCTCTCTTAGAAAGAAAGGCTTCTTTTGGACCAAATCTAGCAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

421

Amino Acids

46.68

Weight (kDa)

9.29

Isoelectric Point (pI)

69.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21500 AT2G21500 AT4G39140 AT4G39140 AT4G39140 AT4G39140 AT4G39140
fragaria_vesca	FvH4_2g09590 FvH4_2g09590 FvH4_2g09590
malus_domestica	MD05G1061300.v1.1 MD10G1069100.v1.1
prunus_persica	Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1
pyrus_communis	pycom05g05240 pycom10g05510
rosa_chinensis	RchiOBHm_Chr6g0265921
rosa_laevigata	RLG00000014146
rosa_multiflora	Rmu_co8229217.1_g000001 Rmu_sc0019932.1_g000001
rosa_roxburghii	Rroxscaffold_7G00202200
rosa_rugosa	Rorug06G0021400.1 Rorug06G0021500 Rorug06G0021600.1 Rorug06G0021700
rosa_samantha	Rh6AG142900 Rh6BG143000 Rh6CG139600 Rh6DG127300
rosa_wichuraiana	Rw6G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	481
Acc36I	ACCTGC	1 cut(s)	481
AccII	CGCG	2 cut(s)	135, 1023
AciI	CCGC	3 cut(s)	503, 1021, 1070
AclWI	GGATC	2 cut(s)	762, 902
AcsI	RAATTY	4 cut(s)	67, 902, 1040, 1260
AcuI	CTGAAG	1 cut(s)	600
AdeI	CACNNNGTG	1 cut(s)	935
AfiI	CCNNNNNNNGG	2 cut(s)	1027, 1069
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	5 cut(s)	74, 303, 360, 952, 1116
AjiI	CACGTC	1 cut(s)	856
Alw21I	GWGCWC	2 cut(s)	825, 1220
Alw26I	GTCTC	7 cut(s)	24, 143, 199, 331, 402, 532, 1003
AlwI	GGATC	2 cut(s)	762, 902
AlwNI	CAGNNNCTG	1 cut(s)	578
Ama87I	CYCGRG	3 cut(s)	27, 763, 1213
ApeKI	GCWGC	1 cut(s)	833
ApoI	RAATTY	4 cut(s)	67, 902, 1040, 1260
Asp700I	GAANNNNTTC	3 cut(s)	947, 1129, 1235
AspS9I	GGNCC	3 cut(s)	618, 1170, 1245
AsuHPI	GGTGA	5 cut(s)	331, 429, 544, 549, 947
AvaI	CYCGRG	3 cut(s)	27, 763, 1213
AvaII	GGWCC	3 cut(s)	618, 1170, 1245
BaeGI	GKGCMC	1 cut(s)	855
BaeI	ACNNNNGTAYC	2 cut(s)	1072, 1105
BanII	GRGCYC	2 cut(s)	825, 1220
Bbv12I	GWGCWC	2 cut(s)	825, 1220
BbvI	GCAGC	1 cut(s)	820
BccI	CCATC	6 cut(s)	108, 388, 427, 605, 637, 929
BciVI	GTATCC	1 cut(s)	1073
BclI	TGATCA	2 cut(s)	289, 739
BcoDI	GTCTC	7 cut(s)	24, 143, 199, 331, 402, 532, 1003
BfaI	CTAG	4 cut(s)	842, 996, 1152, 1254
BfuAI	ACCTGC	1 cut(s)	481
BfuI	GTATCC	1 cut(s)	1073
BisI	GCNGC	2 cut(s)	834, 1071
BlpI	GCTNAGC	1 cut(s)	571
BlsI	GCNGC	2 cut(s)	835, 1072
Bme18I	GGWCC	3 cut(s)	618, 1170, 1245
BmeT110I	CYCGRG	3 cut(s)	27, 763, 1213
BmgBI	CACGTC	1 cut(s)	856
BmgT120I	GGNCC	3 cut(s)	618, 1170, 1245
BmiI	GGNNCC	1 cut(s)	1171
BmrI	ACTGGG	1 cut(s)	941
BmuI	ACTGGG	1 cut(s)	941
BplI	GAGNNNNNCTC	4 cut(s)	79, 111, 653, 685
BpmI	CTGGAG	1 cut(s)	124
Bpu1102I	GCTNAGC	1 cut(s)	571
BpuEI	CTTGAG	1 cut(s)	1141
BsaI	GGTCTC	1 cut(s)	143
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 809, 839
Bsc4I	CCNNNNNNNGG	2 cut(s)	1027, 1069
Bse1I	ACTGG	2 cut(s)	107, 936
BseGI	GGATG	2 cut(s)	422, 482
BseLI	CCNNNNNNNGG	2 cut(s)	1027, 1069
BseMII	CTCAG	4 cut(s)	444, 585, 617, 768
BseNI	ACTGG	2 cut(s)	107, 936
BseRI	GAGGAG	1 cut(s)	141
BseSI	GKGCMC	1 cut(s)	855
BseXI	GCAGC	1 cut(s)	820
BseYI	CCCAGC	1 cut(s)	589
BsgI	GTGCAG	1 cut(s)	910
Bsh1236I	CGCG	2 cut(s)	135, 1023
BsiHKAI	GWGCWC	2 cut(s)	825, 1220
BsiHKCI	CYCGRG	3 cut(s)	27, 763, 1213
BslFI	GGGAC	2 cut(s)	439, 903
BslI	CCNNNNNNNGG	2 cut(s)	1027, 1069
BsmAI	GTCTC	7 cut(s)	24, 143, 199, 331, 402, 532, 1003
BsmFI	GGGAC	2 cut(s)	439, 903
BsmI	GAATGC	1 cut(s)	13
Bso31I	GGTCTC	1 cut(s)	143
BsoBI	CYCGRG	3 cut(s)	27, 763, 1213
Bsp1286I	GDGCHC	3 cut(s)	825, 855, 1220
Bsp143I	GATC	6 cut(s)	172, 289, 336, 739, 767, 907
Bsp1720I	GCTNAGC	1 cut(s)	571
BspACI	CCGC	3 cut(s)	503, 1021, 1070
BspCNI	CTCAG	4 cut(s)	443, 584, 616, 769
BspFNI	CGCG	2 cut(s)	135, 1023
BspLI	GGNNCC	1 cut(s)	1171
BspMI	ACCTGC	1 cut(s)	481
BspPI	GGATC	2 cut(s)	762, 902
BspTNI	GGTCTC	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	107, 936
BssMI	GATC	6 cut(s)	172, 289, 336, 739, 767, 907
Bst4CI	ACNGT	4 cut(s)	396, 444, 752, 957
Bst6I	CTCTTC	2 cut(s)	141, 576
BstC8I	GCNNGC	2 cut(s)	627, 760
BstDEI	CTNAG	6 cut(s)	430, 571, 603, 777, 1013, 1223
BstF5I	GGATG	2 cut(s)	422, 482
BstFNI	CGCG	2 cut(s)	135, 1023
BstKTI	GATC	6 cut(s)	175, 292, 339, 742, 770, 910
BstMAI	GTCTC	7 cut(s)	24, 143, 199, 331, 402, 532, 1003
BstMBI	GATC	6 cut(s)	172, 289, 336, 739, 767, 907
BstMWI	GCNNNNNNNGC	5 cut(s)	268, 502, 842, 974, 1125
BstNSI	RCATGY	1 cut(s)	849
BstSLI	GKGCMC	1 cut(s)	855
BstUI	CGCG	2 cut(s)	135, 1023
BstV1I	GCAGC	1 cut(s)	820
BstX2I	RGATCY	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	767
BsuI	GTATCC	1 cut(s)	1073
BtgZI	GCGATG	1 cut(s)	1050
BtrI	CACGTC	1 cut(s)	856
BtsCI	GGATG	2 cut(s)	422, 482
BtsIMutI	CAGTG	3 cut(s)	438, 440, 929
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	2 cut(s)	627, 760
CaiI	CAGNNNCTG	1 cut(s)	578
Cfr13I	GGNCC	3 cut(s)	618, 1170, 1245
CseI	GACGC	2 cut(s)	141, 268
CviAII	CATG	3 cut(s)	267, 622, 846
DdeI	CTNAG	6 cut(s)	430, 571, 603, 777, 1013, 1223
DpnI	GATC	6 cut(s)	174, 291, 338, 741, 769, 909
DpnII	GATC	6 cut(s)	172, 289, 336, 739, 767, 907
DraIII	CACNNNGTG	1 cut(s)	935
Eam1104I	CTCTTC	2 cut(s)	141, 576
EarI	CTCTTC	2 cut(s)	141, 576
Ecl136II	GAGCTC	2 cut(s)	823, 1218
Eco24I	GRGCYC	2 cut(s)	825, 1220
Eco31I	GGTCTC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	1107
Eco47I	GGWCC	3 cut(s)	618, 1170, 1245
Eco53kI	GAGCTC	2 cut(s)	823, 1218
Eco57I	CTGAAG	1 cut(s)	600
Eco88I	CYCGRG	3 cut(s)	27, 763, 1213
EcoICRI	GAGCTC	2 cut(s)	823, 1218
EcoRV	GATATC	1 cut(s)	1107
EcoT38I	GRGCYC	2 cut(s)	825, 1220
FaeI	CATG	3 cut(s)	270, 625, 849
FaiI	YATR	5 cut(s)	268, 532, 534, 623, 847
FalI	AAGNNNNNCTT	2 cut(s)	1220, 1252
FaqI	GGGAC	2 cut(s)	439, 903
FatI	CATG	3 cut(s)	266, 621, 845
FauNDI	CATATG	1 cut(s)	532
FbaI	TGATCA	2 cut(s)	289, 739
Fnu4HI	GCNGC	2 cut(s)	834, 1071
FokI	GGATG	2 cut(s)	409, 469
FriOI	GRGCYC	2 cut(s)	825, 1220
Fsp4HI	GCNGC	2 cut(s)	834, 1071
FspBI	CTAG	4 cut(s)	842, 996, 1152, 1254
GluI	GCNGC	2 cut(s)	834, 1071
GsaI	CCCAGC	1 cut(s)	593
GsuI	CTGGAG	1 cut(s)	124
HgaI	GACGC	2 cut(s)	141, 268
Hin1II	CATG	3 cut(s)	270, 625, 849
HindIII	AAGCTT	2 cut(s)	627, 1117
HinfI	GANTC	7 cut(s)	320, 356, 549, 599, 662, 838, 1204
HphI	GGTGA	5 cut(s)	331, 429, 544, 549, 947
Hpy166II	GTNNAC	1 cut(s)	1030
Hpy188III	TCNNGA	6 cut(s)	29, 64, 303, 701, 765, 1173
Hpy8I	GTNNAC	1 cut(s)	1030
Hpy99I	CGWCG	1 cut(s)	702
HpyAV	CCTTC	2 cut(s)	436, 921
HpyCH4III	ACNGT	4 cut(s)	396, 444, 752, 957
HpyCH4IV	ACGT	1 cut(s)	855
HpyCH4V	TGCA	4 cut(s)	389, 476, 625, 927
HpyF10VI	GCNNNNNNNGC	5 cut(s)	268, 502, 842, 974, 1125
HpyF3I	CTNAG	6 cut(s)	430, 571, 603, 777, 1013, 1223
HpySE526I	ACGT	1 cut(s)	855
Hsp92II	CATG	3 cut(s)	270, 625, 849
Ksp22I	TGATCA	2 cut(s)	289, 739
Kzo9I	GATC	6 cut(s)	172, 289, 336, 739, 767, 907
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	9 cut(s)	88, 126, 294, 399, 486, 575, 903, 917, 1186
Lsp1109I	GCAGC	1 cut(s)	820
MaeI	CTAG	4 cut(s)	842, 996, 1152, 1254
MaeII	ACGT	1 cut(s)	855
MaeIII	GTNAC	3 cut(s)	185, 435, 701
MalI	GATC	6 cut(s)	174, 291, 338, 741, 769, 909
MboI	GATC	6 cut(s)	172, 289, 336, 739, 767, 907
MboII	GAAGA	3 cut(s)	158, 593, 952
MflI	RGATCY	1 cut(s)	767
MhlI	GDGCHC	3 cut(s)	825, 855, 1220
MluCI	AATT	7 cut(s)	67, 250, 306, 488, 902, 1040, 1260
MluI	ACGCGT	1 cut(s)	133
MlyI	GAGTC	2 cut(s)	314, 671
MmeI	TCCRAC	1 cut(s)	939
MnlI	CCTC	8 cut(s)	81, 119, 122, 163, 322, 519, 565, 579
MroXI	GAANNNNTTC	3 cut(s)	947, 1129, 1235
MseI	TTAA	4 cut(s)	491, 971, 1053, 1188
Mva1269I	GAATGC	1 cut(s)	13
MvnI	CGCG	2 cut(s)	135, 1023
MwoI	GCNNNNNNNGC	5 cut(s)	268, 502, 842, 974, 1125
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	6 cut(s)	172, 289, 336, 739, 767, 907
NlaIII	CATG	3 cut(s)	270, 625, 849
NlaIV	GGNNCC	1 cut(s)	1171
NmuCI	GTSAC	2 cut(s)	435, 701
NspI	RCATGY	1 cut(s)	849
PaeR7I	CTCGAG	2 cut(s)	27, 763
PaqCI	CACCTGC	1 cut(s)	481
PcsI	WCGNNNNNNNCGW	3 cut(s)	181, 825, 903
PctI	GAATGC	1 cut(s)	13
PdmI	GAANNNNTTC	3 cut(s)	947, 1129, 1235
PfeI	GAWTC	5 cut(s)	356, 549, 599, 838, 1204
PflFI	GACNNNGTC	2 cut(s)	262, 323
PkrI	GCNGC	2 cut(s)	835, 1072
PleI	GAGTC	2 cut(s)	314, 670
PpsI	GAGTC	2 cut(s)	314, 670
Psp124BI	GAGCTC	2 cut(s)	825, 1220
PspFI	CCCAGC	1 cut(s)	589
PspN4I	GGNNCC	1 cut(s)	1171
PspPI	GGNCC	3 cut(s)	618, 1170, 1245
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	767
PsyI	GACNNNGTC	2 cut(s)	262, 323
SacI	GAGCTC	2 cut(s)	825, 1220
SaqAI	TTAA	4 cut(s)	491, 971, 1053, 1188
SatI	GCNGC	2 cut(s)	834, 1071
Sau3AI	GATC	6 cut(s)	172, 289, 336, 739, 767, 907
Sau96I	GGNCC	3 cut(s)	618, 1170, 1245
SchI	GAGTC	2 cut(s)	314, 671
SduI	GDGCHC	3 cut(s)	825, 855, 1220
Sfr274I	CTCGAG	2 cut(s)	27, 763
SinI	GGWCC	3 cut(s)	618, 1170, 1245
SlaI	CTCGAG	2 cut(s)	27, 763
SmlI	CTYRAG	3 cut(s)	27, 763, 1120
SmoI	CTYRAG	3 cut(s)	27, 763, 1120
Sse9I	AATT	7 cut(s)	67, 250, 306, 488, 902, 1040, 1260
SsiI	CCGC	3 cut(s)	503, 1021, 1070
SspMI	CTAG	4 cut(s)	842, 996, 1152, 1254
SstI	GAGCTC	2 cut(s)	825, 1220
TaaI	ACNGT	4 cut(s)	396, 444, 752, 957
TaiI	ACGT	1 cut(s)	858
TaqI	TCGA	5 cut(s)	28, 63, 764, 897, 906
TasI	AATT	7 cut(s)	67, 250, 306, 488, 902, 1040, 1260
TauI	GCSGC	1 cut(s)	1073
TfiI	GAWTC	5 cut(s)	356, 549, 599, 838, 1204
Tru1I	TTAA	4 cut(s)	491, 971, 1053, 1188
Tru9I	TTAA	4 cut(s)	491, 971, 1053, 1188
TscAI	CASTG	3 cut(s)	438, 447, 936
TseFI	GTSAC	2 cut(s)	435, 701
TseI	GCWGC	1 cut(s)	833
Tsp45I	GTSAC	2 cut(s)	435, 701
TspDTI	ATGAA	6 cut(s)	393, 471, 612, 1004, 1053, 1196
TspGWI	ACGGA	1 cut(s)	817
TspRI	CASTG	3 cut(s)	438, 447, 936
Tth111I	GACNNNGTC	2 cut(s)	262, 323
VpaK11BI	GGWCC	3 cut(s)	618, 1170, 1245
XapI	RAATTY	4 cut(s)	67, 902, 1040, 1260
XceI	RCATGY	1 cut(s)	849
XcmI	CCANNNNNNNNNTGG	1 cut(s)	928
XhoI	CTCGAG	2 cut(s)	27, 763
XmnI	GAANNNNTTC	3 cut(s)	947, 1129, 1235
XspI	CTAG	4 cut(s)	842, 996, 1152, 1254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.