Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003742

Physical Location & Seq

Genomic Coordinates Forward (+)

22203434 .. 22208849

Gene Structure 5416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG142900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTCTATGGCAGATCAATCTATTTCAAGAAACATTTCCATGGATGCCAGTCTAGAACAGGCAGATCATATGCGAACAAAGGAGTCAACGGAATCCTCAACAGTGTCATACCCGTCTCCTGCAAAGCTATCAGTTTCATTGCCTTCTACTTCATCCTTGTCCGCGTCCCCGTTGTCATCCCAATATCACCTGCCTCCTGCTAGCTCAACCCCGTCGAGGTGGCCTCGCTGTTCTCCTAGACATCAGCTATTAAGGCAAGCATCTGACAGCCGAATTCCAGGAAACAAATCACCAAGCTACCTCTCAATATCTGAAGATAGGGCAAGGCTCCCTTCATGGAGCAATGAATCTGCTAGGGGCTCCCGTGGTGGGTCTTCAGATAGTTGGTCTATGCATGCATTTTCTGAGCTCATGGCCACATCTAATAGAGAAAGGTGGTCTTTTGATAGTGAATCGTTTGGCTTTAATCGTGAGAAGATAACTAGATCCAATAGCAGAATATCAGCTTCCCCCTCCATGGATTTGCAGACATGTGGGATTTGCTCAAAGCTATTAACTGAGAAATCTTCGTGGAGTGGCCAAAAGTTTATTGCGAACAATGAGCTCTCTGTGGTTGCAGTGCTAACATGTGGGCATTCTTATCACGCTGAGTGTTTGGAGCATATGACGCCTGATATCAACAAGTATGACCCAGCTTGCCCTGTTTGCACCTTTGGAGAGAAACAGATCCATAAGTTGTCCGAAAAGGCATTGAAAGCTGAAATGGATTTGAAGGCTAGAAATAGGAGATCAAGGAATCGGGTGCTAGATCTTGATAGTGATTCTGCTGTGTTTGATCGCTTGAAAGGTAGTGGACATCAGGGAAAGGGTCCTAAGATGGCATCCAGTTCCAGCATGAGAAACTCCTCGGGAAAGCCTTTTTTGAGACGGCTCTCATTTGGCTCCAAGAGTGCTCGAGCCCTGTCGGAGAATCATTCTACCAGAAAGAAGGGGTTCTTCTGGGCAAAATCTAGCAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

340

Amino Acids

37.56

Weight (kDa)

9.76

Isoelectric Point (pI)

71.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21500 AT2G21500 AT4G39140 AT4G39140 AT4G39140 AT4G39140 AT4G39140
fragaria_vesca	FvH4_2g09590 FvH4_2g09590 FvH4_2g09590
malus_domestica	MD05G1061300.v1.1 MD10G1069100.v1.1
prunus_persica	Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1
pyrus_communis	pycom05g05240 pycom10g05510
rosa_chinensis	RchiOBHm_Chr6g0265921
rosa_laevigata	RLG00000014146
rosa_multiflora	Rmu_co8229217.1_g000001 Rmu_sc0019932.1_g000001
rosa_roxburghii	Rroxscaffold_7G00202200
rosa_rugosa	Rorug06G0021400.1 Rorug06G0021500 Rorug06G0021600.1 Rorug06G0021700
rosa_samantha	Rh6AG142900 Rh6BG143000 Rh6CG139600 Rh6DG127300
rosa_wichuraiana	Rw6G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	198
Acc36I	ACCTGC	1 cut(s)	198
AccII	CGCG	1 cut(s)	164
AciI	CCGC	1 cut(s)	162
AclWI	GGATC	2 cut(s)	480, 721
AcoI	YGGCCR	2 cut(s)	414, 577
AcsI	RAATTY	1 cut(s)	273
AcuI	CTGAAG	2 cut(s)	333, 360
AcyI	GRCGYC	1 cut(s)	668
AfiI	CCNNNNNNNGG	3 cut(s)	216, 369, 517
AflIII	ACRYGT	2 cut(s)	530, 626
AgsI	TTSAA	4 cut(s)	27, 754, 772, 844
AjnI	CCWGG	1 cut(s)	277
Alw21I	GWGCWC	3 cut(s)	411, 606, 955
Alw26I	GTCTC	2 cut(s)	120, 919
AlwI	GGATC	2 cut(s)	480, 721
Ama87I	CYCGRG	2 cut(s)	907, 954
AoxI	GGCC	3 cut(s)	221, 414, 577
ApoI	RAATTY	1 cut(s)	273
Asp700I	GAANNNNTTC	2 cut(s)	34, 992
AspS9I	GGNCC	1 cut(s)	869
AsuHPI	GGTGA	2 cut(s)	179, 282
AsuNHI	GCTAGC	1 cut(s)	200
AvaI	CYCGRG	2 cut(s)	907, 954
AvaII	GGWCC	1 cut(s)	869
BalI	TGGCCA	2 cut(s)	416, 579
BanII	GRGCYC	4 cut(s)	362, 411, 606, 961
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	3 cut(s)	411, 606, 955
BccI	CCATC	1 cut(s)	871
BceAI	ACGGC	1 cut(s)	944
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	120, 919
BfaI	CTAG	8 cut(s)	53, 201, 237, 354, 483, 777, 806, 1011
BfuAI	ACCTGC	1 cut(s)	198
BglII	AGATCT	1 cut(s)	808
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	869
BmeT110I	CYCGRG	2 cut(s)	907, 954
BmgT120I	GGNCC	1 cut(s)	869
BmiI	GGNNCC	4 cut(s)	329, 361, 870, 943
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	3 cut(s)	34, 269, 890
BmtI	GCTAGC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	366
BplI	GAGNNNNNCTC	2 cut(s)	208, 240
BsaHI	GRCGYC	1 cut(s)	668
BsaJI	CCNNGG	4 cut(s)	39, 364, 516, 906
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 369, 517
Bse1I	ACTGG	2 cut(s)	48, 885
Bse3DI	GCAATG	2 cut(s)	137, 349
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	4 cut(s)	39, 364, 516, 906
BseGI	GGATG	4 cut(s)	49, 152, 176, 881
BseLI	CCNNNNNNNGG	3 cut(s)	216, 369, 517
BseMI	GCAATG	2 cut(s)	137, 349
BseMII	CTCAG	3 cut(s)	396, 549, 639
BseNI	ACTGG	2 cut(s)	48, 885
BseRI	GAGGAG	1 cut(s)	895
BseYI	CCCAGC	1 cut(s)	691
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	3 cut(s)	223, 416, 579
BsiHKAI	GWGCWC	3 cut(s)	411, 606, 955
BsiHKCI	CYCGRG	2 cut(s)	907, 954
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	3 cut(s)	216, 369, 517
BsmAI	GTCTC	2 cut(s)	120, 919
BsmBI	CGTCTC	2 cut(s)	120, 919
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	3 cut(s)	223, 416, 579
BsoBI	CYCGRG	2 cut(s)	907, 954
Bsp1286I	GDGCHC	5 cut(s)	362, 411, 606, 955, 961
Bsp143I	GATC	7 cut(s)	13, 64, 485, 726, 788, 808, 835
Bsp19I	CCATGG	2 cut(s)	39, 516
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	3 cut(s)	223, 416, 579
BspCNI	CTCAG	3 cut(s)	397, 550, 640
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	4 cut(s)	329, 361, 870, 943
BspMI	ACCTGC	1 cut(s)	198
BspOI	GCTAGC	1 cut(s)	204
BspPI	GGATC	2 cut(s)	480, 721
BsrDI	GCAATG	2 cut(s)	137, 349
BsrI	ACTGG	2 cut(s)	48, 885
BssECI	CCNNGG	4 cut(s)	39, 364, 516, 906
BssMI	GATC	7 cut(s)	13, 64, 485, 726, 788, 808, 835
BssNI	GRCGYC	1 cut(s)	668
BssT1I	CCWWGG	2 cut(s)	39, 516
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	668
BstC8I	GCNNGC	4 cut(s)	202, 258, 396, 697
BstDEI	CTNAG	4 cut(s)	405, 558, 648, 873
BstDSI	CCRYGG	3 cut(s)	39, 364, 516
BstF5I	GGATG	4 cut(s)	49, 152, 176, 881
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	7 cut(s)	16, 67, 488, 729, 791, 811, 838
BstMAI	GTCTC	2 cut(s)	120, 919
BstMBI	GATC	7 cut(s)	13, 64, 485, 726, 788, 808, 835
BstMWI	GCNNNNNNNGC	4 cut(s)	253, 667, 705, 755
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	3 cut(s)	398, 534, 630
BstSCI	CCNGG	1 cut(s)	277
BstUI	CGCG	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	3 cut(s)	485, 726, 808
BstYI	RGATCY	3 cut(s)	485, 726, 808
BsuRI	GGCC	3 cut(s)	223, 416, 579
BtgI	CCRYGG	3 cut(s)	39, 364, 516
BtsCI	GGATG	4 cut(s)	49, 152, 176, 881
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	2 cut(s)	108, 624
BveI	ACCTGC	1 cut(s)	198
Cac8I	GCNNGC	4 cut(s)	202, 258, 396, 697
Cfr13I	GGNCC	1 cut(s)	869
CseI	GACGC	2 cut(s)	153, 676
CviAII	CATG	8 cut(s)	40, 336, 395, 412, 517, 531, 627, 895
DdeI	CTNAG	4 cut(s)	405, 558, 648, 873
DpnI	GATC	7 cut(s)	15, 66, 487, 728, 790, 810, 837
DpnII	GATC	7 cut(s)	13, 64, 485, 726, 788, 808, 835
EaeI	YGGCCR	2 cut(s)	414, 577
Ecl136II	GAGCTC	2 cut(s)	409, 604
Eco130I	CCWWGG	2 cut(s)	39, 516
Eco24I	GRGCYC	4 cut(s)	362, 411, 606, 961
Eco32I	GATATC	1 cut(s)	676
Eco47I	GGWCC	1 cut(s)	869
Eco53kI	GAGCTC	2 cut(s)	409, 604
Eco57I	CTGAAG	2 cut(s)	333, 360
Eco88I	CYCGRG	2 cut(s)	907, 954
EcoICRI	GAGCTC	2 cut(s)	409, 604
EcoO109I	RGGNCCY	1 cut(s)	869
EcoRI	GAATTC	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	277
EcoRV	GATATC	1 cut(s)	676
EcoT14I	CCWWGG	2 cut(s)	39, 516
EcoT22I	ATGCAT	2 cut(s)	396, 400
EcoT38I	GRGCYC	4 cut(s)	362, 411, 606, 961
ErhI	CCWWGG	2 cut(s)	39, 516
Esp3I	CGTCTC	2 cut(s)	120, 919
FaeI	CATG	8 cut(s)	43, 339, 398, 415, 520, 534, 630, 898
FalI	AAGNNNNNCTT	6 cut(s)	316, 348, 424, 456, 980, 1012
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	8 cut(s)	39, 335, 394, 411, 516, 530, 626, 894
FauNDI	CATATG	2 cut(s)	69, 663
FokI	GGATG	4 cut(s)	56, 139, 163, 868
FriOI	GRGCYC	4 cut(s)	362, 411, 606, 961
FspBI	CTAG	8 cut(s)	53, 201, 237, 354, 483, 777, 806, 1011
GsaI	CCCAGC	1 cut(s)	695
HaeIII	GGCC	3 cut(s)	223, 416, 579
HgaI	GACGC	2 cut(s)	153, 676
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	8 cut(s)	43, 339, 398, 415, 520, 534, 630, 898
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	7 cut(s)	83, 92, 347, 452, 796, 821, 970
HphI	GGTGA	2 cut(s)	179, 282
Hpy166II	GTNNAC	2 cut(s)	87, 854
Hpy188I	TCNGA	6 cut(s)	265, 313, 379, 406, 742, 967
Hpy188III	TCNNGA	5 cut(s)	27, 53, 470, 812, 909
Hpy8I	GTNNAC	2 cut(s)	87, 854
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	4 cut(s)	153, 342, 766, 982
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	6 cut(s)	122, 394, 398, 526, 617, 708
HpyF10VI	GCNNNNNNNGC	4 cut(s)	253, 667, 705, 755
HpyF3I	CTNAG	4 cut(s)	405, 558, 648, 873
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	8 cut(s)	43, 339, 398, 415, 520, 534, 630, 898
Kzo9I	GATC	7 cut(s)	13, 64, 485, 726, 788, 808, 835
LmnI	GCTCC	5 cut(s)	333, 339, 365, 658, 947
LweI	GCATC	3 cut(s)	34, 269, 890
MaeI	CTAG	8 cut(s)	53, 201, 237, 354, 483, 777, 806, 1011
MalI	GATC	7 cut(s)	15, 66, 487, 728, 790, 810, 837
MboI	GATC	7 cut(s)	13, 64, 485, 726, 788, 808, 835
MboII	GAAGA	5 cut(s)	326, 366, 487, 558, 988
MflI	RGATCY	3 cut(s)	485, 726, 808
MhlI	GDGCHC	5 cut(s)	362, 411, 606, 955, 961
MlsI	TGGCCA	2 cut(s)	416, 579
MluCI	AATT	1 cut(s)	273
MluNI	TGGCCA	2 cut(s)	416, 579
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	945
MnlI	CCTC	7 cut(s)	106, 204, 210, 234, 311, 523, 916
Mox20I	TGGCCA	2 cut(s)	416, 579
Mph1103I	ATGCAT	2 cut(s)	396, 400
MroXI	GAANNNNTTC	2 cut(s)	34, 992
MscI	TGGCCA	2 cut(s)	416, 579
MseI	TTAA	3 cut(s)	251, 465, 554
MslI	CAYNNNNRTG	1 cut(s)	38
Msp20I	TGGCCA	2 cut(s)	416, 579
MspR9I	CCNGG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	4 cut(s)	253, 667, 705, 755
NcoI	CCATGG	2 cut(s)	39, 516
NdeI	CATATG	2 cut(s)	69, 663
NdeII	GATC	7 cut(s)	13, 64, 485, 726, 788, 808, 835
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	8 cut(s)	43, 339, 398, 415, 520, 534, 630, 898
NlaIV	GGNNCC	4 cut(s)	329, 361, 870, 943
NsiI	ATGCAT	2 cut(s)	396, 400
NspI	RCATGY	3 cut(s)	398, 534, 630
PaeI	GCATGC	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	954
PaqCI	CACCTGC	1 cut(s)	198
PciI	ACATGT	2 cut(s)	530, 626
PctI	GAATGC	1 cut(s)	634
PdmI	GAANNNNTTC	2 cut(s)	34, 992
PfeI	GAWTC	6 cut(s)	92, 347, 452, 796, 821, 970
PfoI	TCCNGGA	1 cut(s)	277
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	869
PscI	ACATGT	2 cut(s)	530, 626
Psp124BI	GAGCTC	2 cut(s)	411, 606
Psp5II	RGGWCCY	1 cut(s)	869
Psp6I	CCWGG	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	4 cut(s)	329, 361, 870, 943
PspPI	GGNCC	1 cut(s)	869
PspPPI	RGGWCCY	1 cut(s)	869
PspXI	VCTCGAGB	1 cut(s)	954
PsuI	RGATCY	3 cut(s)	485, 726, 808
RseI	CAYNNNNRTG	1 cut(s)	38
SacI	GAGCTC	2 cut(s)	411, 606
SaqAI	TTAA	3 cut(s)	251, 465, 554
Sau3AI	GATC	7 cut(s)	13, 64, 485, 726, 788, 808, 835
Sau96I	GGNCC	1 cut(s)	869
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	5 cut(s)	362, 411, 606, 955, 961
SfaNI	GCATC	3 cut(s)	34, 269, 890
Sfr274I	CTCGAG	1 cut(s)	954
SinI	GGWCC	1 cut(s)	869
SlaI	CTCGAG	1 cut(s)	954
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	954
SmoI	CTYRAG	1 cut(s)	954
SphI	GCATGC	1 cut(s)	398
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	8 cut(s)	53, 201, 237, 354, 483, 777, 806, 1011
SstI	GAGCTC	2 cut(s)	411, 606
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	2 cut(s)	39, 516
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	2 cut(s)	215, 955
TasI	AATT	1 cut(s)	273
TfiI	GAWTC	6 cut(s)	92, 347, 452, 796, 821, 970
Tru1I	TTAA	3 cut(s)	251, 465, 554
Tru9I	TTAA	3 cut(s)	251, 465, 554
TscAI	CASTG	2 cut(s)	108, 624
TspDTI	ATGAA	4 cut(s)	126, 141, 324, 360
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	2 cut(s)	108, 624
VpaK11BI	GGWCC	1 cut(s)	869
XapI	RAATTY	1 cut(s)	273
XbaI	TCTAGA	1 cut(s)	52
XceI	RCATGY	3 cut(s)	398, 534, 630
XhoI	CTCGAG	1 cut(s)	954
XmnI	GAANNNNTTC	2 cut(s)	34, 992
XspI	CTAG	8 cut(s)	53, 201, 237, 354, 483, 777, 806, 1011
Zsp2I	ATGCAT	2 cut(s)	396, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.