Prupe.8G091100_v2.0.a1

Ring finger

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
12388077 .. 12394146
6070 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G091100.2

Sequence Viewer

Length: 1314 bp
ATGGGGTCTGCTTGTTGTGTCGCTGCTAGAGACAAGACTATAACAAACAGAGCAAACAGTGAAGTTCTGCATCGCAATATTCGGTATTCTCCAACATGGAGCTTTCGATGGGATAACCGAGTGGGGGTAGCAGGTGAAGAGACTTCTGTGAGTTGGTTTTCTGATGGAATTAGCAGAAACGATGGTTCTGAAGTTAAATTTGAGTCAGCATGTGTATCAGAGGAGGGAAGTCCATTGGTACATTTTCGAAGACATACAGGGCAAAAGTCCTCCATTTCTGAGGGAACTGCTGGCCATGTGAGGACTCCCGCTTCAGATCGATCTATTTCAAGAAATATTTCCATGGATGCAAGTCTAGAACAGGCAAAGGAGTCAACAGAATCCCCTACAGTTTCATATCCGTCCCCGACGAAGTTATCAGTTTCATTGCCTTCTACTTCATCGTTGTCTGCATCCCCATTGTCATCCCAGTGTCATCTGCCTCCTGCTAGCTCAACGCCATTGAGGTGGCCCCGCTGTTCTCCAGGACATCAGCTATTAAGGCAAGTATCTGATGGCCGAGTCCCAGGCAACAAGTCACCAAACAGCTGCTCAATTTCTGAAGATAGGGCAAGGCTCCCCTCATGGAGCAATGAATCTGCTAGAGGCTCCCGTGGTGGGTCTTCAGATAGTTGGTCTATGCATGCATTTTCTGAGCTCATGGCCACATCTAATAGAGAAAGGTGGTCTTTTGATAGTGAGTCCTTTGGCTTTAATCGTGAGAAGATAACTAGATCCAGTAGCAGAATTTCAGCTTCACCCCCTGTTGATTTGCAGACGTGTGGGGTTTGCTCAAAGCTTTTGACTGAGAAATCTTCATGGAGTGGCCAAAAGATTATTGCAAACAATGAGCTTTCTGTGGTCGCAGTGCTAATTTGTGGGCATGTTTATCATGCCGAATGTTTGGAGAATATGACTTCTGAAATTAACAAGTATGACCCAGCCTGCCCGCTTTGTACTTTTGGGGAGAAACAGATCCACAAGTTGTCTGAAAAGGCATTGAAAGCAGAAATGGACTTGAAATCTAGAAACAAGAGATCAAGAAACCGGGTGTTAGACCTTGACAGTGATTCTGTTGTGTTTGATCGCTTGAAGAGTAGTGGACATCAAGGAAAGGGCCCTAAGATGGGATCGAGTTCCAGCATGAGAAGCTCCTTGGGAAAGCCTTTTCTGAGACGACACTTCTCTTTTGGCTCCAAGAGTACTCGAGCCCTATCAGAGAATCACTCTACGAGAAAGAAAGGGTTCTTCTGGGCAAAATCTAGCAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

438

Amino Acids

48.0

Weight (kDa)

9.53

Isoelectric Point (pI)

70.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 122
Acc36I ACCTGC 1 cut(s) 122
AciI CCGC 3 cut(s) 309, 514, 989
AclWI GGATC 3 cut(s) 768, 1009, 1177
AcoI YGGCCR 4 cut(s) 292, 556, 702, 865
AcsI RAATTY 2 cut(s) 197, 786
AcuI CTGAAG 4 cut(s) 210, 297, 621, 648
AfaI GTAC 3 cut(s) 240, 997, 1243
AfiI CCNNNNNNNGG 4 cut(s) 124, 657, 1165, 1166
AflIII ACRYGT 1 cut(s) 818
AgsI TTSAA 4 cut(s) 330, 1042, 1060, 1132
AjiI CACGTC 1 cut(s) 819
AjnI CCWGG 2 cut(s) 523, 565
AluBI AGCT 9 cut(s) 102, 492, 535, 588, 697, 794, 838, 892, 1191
AluI AGCT 9 cut(s) 102, 492, 535, 588, 697, 794, 838, 892, 1191
Alw21I GWGCWC 1 cut(s) 699
Alw26I GTCTC 3 cut(s) 24, 134, 1207
AlwI GGATC 3 cut(s) 768, 1009, 1177
Ama87I CYCGRG 1 cut(s) 1245
AoxI GGCC 6 cut(s) 292, 509, 556, 702, 865, 1156
ApaI GGGCCC 1 cut(s) 1160
ApeKI GCWGC 2 cut(s) 23, 588
ApoI RAATTY 2 cut(s) 197, 786
Asp700I GAANNNNTTC 2 cut(s) 337, 1283
AspS9I GGNCC 3 cut(s) 510, 1156, 1157
AsuC2I CCSGG 1 cut(s) 1088
AsuHPI GGTGA 3 cut(s) 146, 570, 789
AsuII TTCGAA 1 cut(s) 247
AsuNHI GCTAGC 1 cut(s) 488
AvaI CYCGRG 1 cut(s) 1245
BaeGI GKGCMC 1 cut(s) 1160
BalI TGGCCA 3 cut(s) 294, 704, 867
BanII GRGCYC 3 cut(s) 699, 1160, 1252
BbsI GAAGAC 2 cut(s) 256, 654
Bbv12I GWGCWC 1 cut(s) 699
BbvI GCAGC 2 cut(s) 10, 575
BccI CCATC 5 cut(s) 102, 158, 176, 548, 1159
BciT130I CCWGG 2 cut(s) 525, 567
BcnI CCSGG 1 cut(s) 1088
BcoDI GTCTC 3 cut(s) 24, 134, 1207
BfaI CTAG 7 cut(s) 27, 356, 489, 642, 771, 1065, 1302
BfmI CTRYAG 1 cut(s) 387
BfuAI ACCTGC 1 cut(s) 122
BisI GCNGC 2 cut(s) 24, 589
BlsI GCNGC 2 cut(s) 25, 590
BmcAI AGTACT 1 cut(s) 1243
Bme1390I CCNGG 3 cut(s) 525, 567, 1088
BmeT110I CYCGRG 1 cut(s) 1245
BmgBI CACGTC 1 cut(s) 819
BmgT120I GGNCC 3 cut(s) 510, 1156, 1157
BmiI GGNNCC 5 cut(s) 512, 617, 649, 1158, 1234
BmrFI CCNGG 3 cut(s) 525, 567, 1088
BmrI ACTGGG 1 cut(s) 463
BmsI GCATC 3 cut(s) 79, 337, 461
BmtI GCTAGC 1 cut(s) 492
BmuI ACTGGG 1 cut(s) 463
BpiI GAAGAC 2 cut(s) 256, 654
BplI GAGNNNNNCTC 2 cut(s) 1250, 1282
BpmI CTGGAG 1 cut(s) 507
Bpu14I TTCGAA 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 1088
Bsa29I ATCGAT 1 cut(s) 319
BsaJI CCNNGG 4 cut(s) 342, 565, 652, 1194
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 657, 1165, 1166
Bse1I ACTGG 2 cut(s) 469, 777
Bse3DI GCAATG 2 cut(s) 425, 637
BseBI CCWGG 2 cut(s) 525, 567
BseCI ATCGAT 1 cut(s) 319
BseDI CCNNGG 4 cut(s) 342, 565, 652, 1194
BseGI GGATG 3 cut(s) 352, 452, 464
BseLI CCNNNNNNNGG 4 cut(s) 124, 657, 1165, 1166
BseMI GCAATG 2 cut(s) 425, 637
BseMII CTCAG 4 cut(s) 270, 684, 837, 1202
BseNI ACTGG 2 cut(s) 469, 777
BseRI GAGGAG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 1160
BseXI GCAGC 2 cut(s) 10, 575
BseYI CCCAGC 1 cut(s) 979
BshFI GGCC 6 cut(s) 294, 511, 558, 704, 867, 1158
BshVI ATCGAT 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 699
BsiHKCI CYCGRG 1 cut(s) 1245
BsiSI CCGG 1 cut(s) 1087
BslFI GGGAC 2 cut(s) 388, 548
BslI CCNNNNNNNGG 4 cut(s) 124, 657, 1165, 1166
BsmAI GTCTC 3 cut(s) 24, 134, 1207
BsmBI CGTCTC 1 cut(s) 1207
BsmFI GGGAC 2 cut(s) 388, 548
BsnI GGCC 6 cut(s) 294, 511, 558, 704, 867, 1158
BsoBI CYCGRG 1 cut(s) 1245
Bsp119I TTCGAA 1 cut(s) 247
Bsp120I GGGCCC 1 cut(s) 1156
Bsp1286I GDGCHC 3 cut(s) 699, 1160, 1252
Bsp143I GATC 7 cut(s) 316, 320, 773, 1014, 1076, 1123, 1169
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 3 cut(s) 309, 514, 989
BspANI GGCC 6 cut(s) 294, 511, 558, 704, 867, 1158
BspCNI CTCAG 4 cut(s) 271, 685, 838, 1203
BspDI ATCGAT 1 cut(s) 319
BspLI GGNNCC 5 cut(s) 512, 617, 649, 1158, 1234
BspMI ACCTGC 1 cut(s) 122
BspOI GCTAGC 1 cut(s) 492
BspPI GGATC 3 cut(s) 768, 1009, 1177
BspT104I TTCGAA 1 cut(s) 247
BsrDI GCAATG 2 cut(s) 425, 637
BsrI ACTGG 2 cut(s) 469, 777
BssECI CCNNGG 4 cut(s) 342, 565, 652, 1194
BssMI GATC 7 cut(s) 316, 320, 773, 1014, 1076, 1123, 1169
BssT1I CCWWGG 2 cut(s) 342, 1194
Bst2UI CCWGG 2 cut(s) 525, 567
Bst4CI ACNGT 3 cut(s) 59, 391, 1106
Bst6I CTCTTC 2 cut(s) 132, 1127
BstBI TTCGAA 1 cut(s) 247
BstC8I GCNNGC 5 cut(s) 292, 490, 684, 985, 989
BstDEI CTNAG 5 cut(s) 279, 693, 846, 1161, 1211
BstDSI CCRYGG 2 cut(s) 342, 652
BstF5I GGATG 3 cut(s) 352, 452, 464
BstKTI GATC 7 cut(s) 319, 323, 776, 1017, 1079, 1126, 1172
BstMAI GTCTC 3 cut(s) 24, 134, 1207
BstMBI GATC 7 cut(s) 316, 320, 773, 1014, 1076, 1123, 1169
BstMWI GCNNNNNNNGC 3 cut(s) 541, 1043, 1188
BstNI CCWGG 2 cut(s) 525, 567
BstNSI RCATGY 3 cut(s) 213, 686, 926
BstSCI CCNGG 3 cut(s) 523, 565, 1086
BstSFI CTRYAG 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 1160
BstV1I GCAGC 2 cut(s) 10, 575
BstV2I GAAGAC 2 cut(s) 256, 654
BstX2I RGATCY 2 cut(s) 773, 1014
BstXI CCANNNNNNTGG 1 cut(s) 507
BstYI RGATCY 2 cut(s) 773, 1014
Bsu15I ATCGAT 1 cut(s) 319
BsuRI GGCC 6 cut(s) 294, 511, 558, 704, 867, 1158
BsuTUI ATCGAT 1 cut(s) 319
BtgI CCRYGG 2 cut(s) 342, 652
BtgZI GCGATG 1 cut(s) 56
BtrI CACGTC 1 cut(s) 819
BtsCI GGATG 3 cut(s) 352, 452, 464
BtsI GCAGTG 1 cut(s) 912
BtsIMutI CAGTG 4 cut(s) 64, 476, 912, 1111
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 5 cut(s) 292, 490, 684, 985, 989
Cfr13I GGNCC 3 cut(s) 510, 1156, 1157
ClaI ATCGAT 1 cut(s) 319
Csp6I GTAC 3 cut(s) 239, 996, 1242
CviQI GTAC 3 cut(s) 239, 996, 1242
DdeI CTNAG 5 cut(s) 279, 693, 846, 1161, 1211
DpnI GATC 7 cut(s) 318, 322, 775, 1016, 1078, 1125, 1171
DpnII GATC 7 cut(s) 316, 320, 773, 1014, 1076, 1123, 1169
EaeI YGGCCR 4 cut(s) 292, 556, 702, 865
Eam1104I CTCTTC 2 cut(s) 132, 1127
EarI CTCTTC 2 cut(s) 132, 1127
Ecl136II GAGCTC 1 cut(s) 697
Eco130I CCWWGG 2 cut(s) 342, 1194
Eco24I GRGCYC 3 cut(s) 699, 1160, 1252
Eco53kI GAGCTC 1 cut(s) 697
Eco57I CTGAAG 4 cut(s) 210, 297, 621, 648
Eco88I CYCGRG 1 cut(s) 1245
EcoICRI GAGCTC 1 cut(s) 697
EcoO109I RGGNCCY 2 cut(s) 1156, 1157
EcoRII CCWGG 2 cut(s) 523, 565
EcoT14I CCWWGG 2 cut(s) 342, 1194
EcoT22I ATGCAT 2 cut(s) 684, 688
EcoT38I GRGCYC 3 cut(s) 699, 1160, 1252
ErhI CCWWGG 2 cut(s) 342, 1194
Esp3I CGTCTC 1 cut(s) 1207
FalI AAGNNNNNCTT 2 cut(s) 712, 744
FaqI GGGAC 2 cut(s) 388, 548
FauI CCCGC 3 cut(s) 316, 521, 996
Fnu4HI GCNGC 2 cut(s) 24, 589
FokI GGATG 3 cut(s) 359, 439, 451
FriOI GRGCYC 3 cut(s) 699, 1160, 1252
Fsp4HI GCNGC 2 cut(s) 24, 589
FspBI CTAG 7 cut(s) 27, 356, 489, 642, 771, 1065, 1302
GluI GCNGC 2 cut(s) 24, 589
GsaI CCCAGC 1 cut(s) 983
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 6 cut(s) 294, 511, 558, 704, 867, 1158
HapII CCGG 1 cut(s) 1087
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 836
HinfI GANTC 9 cut(s) 203, 304, 371, 380, 561, 635, 740, 1109, 1261
HpaII CCGG 1 cut(s) 1087
HphI GGTGA 3 cut(s) 146, 570, 789
Hpy166II GTNNAC 2 cut(s) 375, 1142
Hpy188III TCNNGA 5 cut(s) 330, 356, 758, 1065, 1080
Hpy8I GTNNAC 2 cut(s) 375, 1142
Hpy99I CGWCG 1 cut(s) 412
HpyAV CCTTC 1 cut(s) 441
HpyCH4III ACNGT 3 cut(s) 59, 391, 1106
HpyCH4IV ACGT 1 cut(s) 818
HpyCH4V TGCA 7 cut(s) 70, 350, 452, 682, 686, 814, 881
HpyF10VI GCNNNNNNNGC 3 cut(s) 541, 1043, 1188
HpyF3I CTNAG 5 cut(s) 279, 693, 846, 1161, 1211
HpySE526I ACGT 1 cut(s) 818
Kzo9I GATC 7 cut(s) 316, 320, 773, 1014, 1076, 1123, 1169
LmnI GCTCC 6 cut(s) 99, 621, 627, 653, 1196, 1238
Lsp1109I GCAGC 2 cut(s) 10, 575
LweI GCATC 3 cut(s) 79, 337, 461
MaeI CTAG 7 cut(s) 27, 356, 489, 642, 771, 1065, 1302
MaeII ACGT 1 cut(s) 818
MaeIII GTNAC 1 cut(s) 576
MalI GATC 7 cut(s) 318, 322, 775, 1016, 1078, 1125, 1171
MboI GATC 7 cut(s) 316, 320, 773, 1014, 1076, 1123, 1169
MboII GAAGA 8 cut(s) 149, 261, 614, 654, 775, 846, 1144, 1279
MflI RGATCY 2 cut(s) 773, 1014
MhlI GDGCHC 3 cut(s) 699, 1160, 1252
MlsI TGGCCA 3 cut(s) 294, 704, 867
MluCI AATT 6 cut(s) 168, 197, 594, 786, 912, 963
MluNI TGGCCA 3 cut(s) 294, 704, 867
MlyI GAGTC 5 cut(s) 212, 298, 380, 570, 749
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 9 cut(s) 214, 217, 274, 280, 294, 492, 498, 631, 638
Mox20I TGGCCA 3 cut(s) 294, 704, 867
Mph1103I ATGCAT 2 cut(s) 684, 688
MroXI GAANNNNTTC 2 cut(s) 337, 1283
MscI TGGCCA 3 cut(s) 294, 704, 867
MseI TTAA 4 cut(s) 195, 539, 753, 966
MslI CAYNNNNRTG 2 cut(s) 469, 505
Msp20I TGGCCA 3 cut(s) 294, 704, 867
MspA1I CMGCKG 2 cut(s) 516, 588
MspI CCGG 1 cut(s) 1087
MspR9I CCNGG 3 cut(s) 525, 567, 1088
MvaI CCWGG 2 cut(s) 525, 567
MwoI GCNNNNNNNGC 3 cut(s) 541, 1043, 1188
NciI CCSGG 1 cut(s) 1088
NcoI CCATGG 1 cut(s) 342
NdeII GATC 7 cut(s) 316, 320, 773, 1014, 1076, 1123, 1169
NheI GCTAGC 1 cut(s) 488
NlaIV GGNNCC 5 cut(s) 512, 617, 649, 1158, 1234
NmeAIII GCCGAG 1 cut(s) 584
NmuCI GTSAC 1 cut(s) 576
NsiI ATGCAT 2 cut(s) 684, 688
NspI RCATGY 3 cut(s) 213, 686, 926
NspV TTCGAA 1 cut(s) 247
PaeI GCATGC 1 cut(s) 686
PaeR7I CTCGAG 1 cut(s) 1245
PaqCI CACCTGC 1 cut(s) 122
PdmI GAANNNNTTC 2 cut(s) 337, 1283
PfeI GAWTC 4 cut(s) 380, 635, 1109, 1261
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 2 cut(s) 25, 590
PleI GAGTC 5 cut(s) 211, 298, 379, 569, 748
PpsI GAGTC 5 cut(s) 211, 298, 379, 569, 748
Psp124BI GAGCTC 1 cut(s) 699
Psp6I CCWGG 2 cut(s) 523, 565
PspFI CCCAGC 1 cut(s) 979
PspGI CCWGG 2 cut(s) 523, 565
PspN4I GGNNCC 5 cut(s) 512, 617, 649, 1158, 1234
PspOMI GGGCCC 1 cut(s) 1156
PspPI GGNCC 3 cut(s) 510, 1156, 1157
PspXI VCTCGAGB 1 cut(s) 1245
PsuI RGATCY 2 cut(s) 773, 1014
PvuII CAGCTG 1 cut(s) 588
RsaI GTAC 3 cut(s) 240, 997, 1243
RsaNI GTAC 3 cut(s) 239, 996, 1242
RseI CAYNNNNRTG 2 cut(s) 469, 505
SacI GAGCTC 1 cut(s) 699
SaqAI TTAA 4 cut(s) 195, 539, 753, 966
SatI GCNGC 2 cut(s) 24, 589
Sau3AI GATC 7 cut(s) 316, 320, 773, 1014, 1076, 1123, 1169
Sau96I GGNCC 3 cut(s) 510, 1156, 1157
ScaI AGTACT 1 cut(s) 1243
SchI GAGTC 5 cut(s) 212, 298, 380, 570, 749
ScrFI CCNGG 3 cut(s) 525, 567, 1088
SduI GDGCHC 3 cut(s) 699, 1160, 1252
SfaNI GCATC 3 cut(s) 79, 337, 461
SfcI CTRYAG 1 cut(s) 387
Sfr274I CTCGAG 1 cut(s) 1245
SfuI TTCGAA 1 cut(s) 247
SlaI CTCGAG 1 cut(s) 1245
SmiMI CAYNNNNRTG 2 cut(s) 469, 505
SmlI CTYRAG 1 cut(s) 1245
SmoI CTYRAG 1 cut(s) 1245
SphI GCATGC 1 cut(s) 686
Sse9I AATT 6 cut(s) 168, 197, 594, 786, 912, 963
SsiI CCGC 3 cut(s) 309, 514, 989
SspI AATATT 2 cut(s) 79, 337
SspMI CTAG 7 cut(s) 27, 356, 489, 642, 771, 1065, 1302
SstI GAGCTC 1 cut(s) 699
StyD4I CCNGG 3 cut(s) 523, 565, 1086
StyI CCWWGG 2 cut(s) 342, 1194
TaaI ACNGT 3 cut(s) 59, 391, 1106
TaiI ACGT 1 cut(s) 821
TaqI TCGA 5 cut(s) 106, 247, 319, 1172, 1246
TasI AATT 6 cut(s) 168, 197, 594, 786, 912, 963
TatI WGTACW 2 cut(s) 995, 1241
TfiI GAWTC 4 cut(s) 380, 635, 1109, 1261
Tru1I TTAA 4 cut(s) 195, 539, 753, 966
Tru9I TTAA 4 cut(s) 195, 539, 753, 966
TscAI CASTG 4 cut(s) 64, 476, 912, 1111
TseFI GTSAC 1 cut(s) 576
TseI GCWGC 2 cut(s) 23, 588
Tsp45I GTSAC 1 cut(s) 576
TspDTI ATGAA 5 cut(s) 384, 414, 429, 648, 846
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 4 cut(s) 64, 476, 912, 1111
XapI RAATTY 2 cut(s) 197, 786
XbaI TCTAGA 2 cut(s) 355, 1064
XceI RCATGY 3 cut(s) 213, 686, 926
XhoI CTCGAG 1 cut(s) 1245
XmnI GAANNNNTTC 2 cut(s) 337, 1283
XspI CTAG 7 cut(s) 27, 356, 489, 642, 771, 1065, 1302
ZrmI AGTACT 1 cut(s) 1243
Zsp2I ATGCAT 2 cut(s) 684, 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.