FvH4_2g09590

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003742
Physical Location & Seq
Forward (+)
8507027 .. 8512605
5579 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09590.t2

Sequence Viewer

Length: 1326 bp
ATGGGGTCTGCTTGTTGTGTTGCTGCTAGGGATAAGACGATAACAAACAGAGCTAATAGTGAGAATCTGCATCGTAATGTTCGGTATTCACCCACATGGAGCTTTCGGTGGGATAATAGAGTTGGGGTAGCTGGTGAAGAGACTTCTGTAAGTTGGCTTTCTGATGGGATTAGCAGGAATGATGGATCTGAAGCTAAATTTGAGTCGGCTTGTGTATCGGAAGAGGGAAGTCCGTTGGAACATGTGCGAAGACATACCACACATAAGTCTTTAGTTTCTGAAGGAACTGCTGGGAGTGTGAGAACCCCTGCTTCAGATCAATCTATTTCAGGAAACATTTCCATGGATGCAAGTCTAGATCAGGTCGATCATATGCGGACAAAGGAGTCAACTGATTCCCCAACAGTGTCATATCCGTCTCCTGCAAAGCTATCAGTTTCATTGCCTTCTACTTCATCCTTGTCTGCGTCCCCATTGTCATCCCAATATCACCTGCCTCCTGCTAGCTCAACCCCGTCAAAGTGGCCTCGCTATTCTCCTCGACATCAGCTATTAAGGCAAGTATCTGACAGCCGCATTCCAGGAAACAAATCACCAAGCTACCACTCAATTTCTGAAGATAGGGTAACGCTCCCCTCATGGAGCAATGAATCAGCTAGGGGATCCCGTGGTGGGTCGTCAGATAGTTGGTCTATGCATGCATTTTCTGAGCTCATGGCCACATCTAATAGAGAAAGGTGGTCTTTTGATAGTGAGTCCTTTGGCTTTAATCGTGAGAAGATTACCAGATCCAGTAGCAGAATTTCAGCCTCCCCCTCTGTTGATTTGCAGACATGTGGGATTTGCTCAAAGCTGTTAACTGAGAAATCCTCATGGAGTGGCCAAAAGTTTATTGCGAACAATGAGCTTTCTGTGGTTGCAGTTCTAACATGTGGGCATGCTTATCATGCTGAGTGTTTGGAGCATATGACGCCTGATATCAACAAGTATGACCCAGCTTGCCCTGTTTGCACCTTTGGGGAGAAACAGATCCATAAGTTGTCAGAAAAAGCATTGAAAGCTGAAATGGATTTAAAGGCTAGAAATAGGAGGTCAAGGAATCGAGTGCTAGATCTTGATAGTGATTCTGTTGTGTTTGATCGCTTGAAAGGCAGTGGACATCAAGGAAAGGGTCCTAAAATGGCATCCAGTTCCAGCATGAGAAGTTCCTCGGGAAAGCCTTTTCTGAGACGGCTCTCATTTGGCTCCAAGAGTGCTCGGACCCTGTCGGAGAATCATTCTACCAGAAAGAAGGGGTTCTTCTGGGCAAAATCTATAAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

442

Amino Acids

48.51

Weight (kDa)

9.45

Isoelectric Point (pI)

64.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 501
AasI GACNNNNNNGTC 1 cut(s) 385
Acc36I ACCTGC 1 cut(s) 501
AciI CCGC 2 cut(s) 376, 574
AclWI GGATC 5 cut(s) 193, 657, 670, 783, 1024
AcoI YGGCCR 2 cut(s) 717, 880
AcsI RAATTY 2 cut(s) 197, 801
AcuI CTGAAG 4 cut(s) 210, 297, 300, 636
AcyI GRCGYC 1 cut(s) 971
AfiI CCNNNNNNNGG 1 cut(s) 672
AflIII ACRYGT 3 cut(s) 241, 833, 929
AgsI TTSAA 2 cut(s) 1057, 1147
AjnI CCWGG 1 cut(s) 580
Alw21I GWGCWC 2 cut(s) 714, 1258
Alw26I GTCTC 3 cut(s) 134, 423, 1222
AlwI GGATC 5 cut(s) 193, 657, 670, 783, 1024
Ama87I CYCGRG 1 cut(s) 1210
AoxI GGCC 3 cut(s) 524, 717, 880
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 2 cut(s) 197, 801
Asp700I GAANNNNTTC 2 cut(s) 337, 1295
AspS9I GGNCC 2 cut(s) 1172, 1260
AsuHPI GGTGA 4 cut(s) 81, 146, 482, 585
AsuNHI GCTAGC 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 1210
AvaII GGWCC 2 cut(s) 1172, 1260
BalI TGGCCA 2 cut(s) 719, 882
BamHI GGATCC 1 cut(s) 662
BanII GRGCYC 1 cut(s) 714
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 2 cut(s) 714, 1258
BbvI GCAGC 1 cut(s) 10
BccI CCATC 2 cut(s) 158, 176
BceAI ACGGC 1 cut(s) 1247
BciT130I CCWGG 1 cut(s) 582
BcoDI GTCTC 3 cut(s) 134, 423, 1222
BfaI CTAG 6 cut(s) 27, 356, 504, 657, 1080, 1109
BfuAI ACCTGC 1 cut(s) 501
BglII AGATCT 1 cut(s) 1111
BisI GCNGC 2 cut(s) 24, 574
BlsI GCNGC 2 cut(s) 25, 575
Bme1390I CCNGG 1 cut(s) 582
Bme18I GGWCC 2 cut(s) 1172, 1260
BmeT110I CYCGRG 1 cut(s) 1210
BmgT120I GGNCC 2 cut(s) 1172, 1260
BmiI GGNNCC 4 cut(s) 664, 1173, 1246, 1262
BmrFI CCNGG 1 cut(s) 582
BmsI GCATC 3 cut(s) 79, 337, 1193
BmtI GCTAGC 1 cut(s) 507
BpiI GAAGAC 1 cut(s) 256
BplI GAGNNNNNCTC 2 cut(s) 854, 886
BsaHI GRCGYC 1 cut(s) 971
BsaJI CCNNGG 3 cut(s) 342, 667, 1209
Bsc4I CCNNNNNNNGG 1 cut(s) 672
Bse1I ACTGG 2 cut(s) 792, 1188
Bse3DI GCAATG 2 cut(s) 440, 652
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 3 cut(s) 342, 667, 1209
BseGI GGATG 4 cut(s) 352, 455, 479, 1184
BseLI CCNNNNNNNGG 1 cut(s) 672
BseMI GCAATG 2 cut(s) 440, 652
BseMII CTCAG 4 cut(s) 699, 852, 942, 1217
BseNI ACTGG 2 cut(s) 792, 1188
BseRI GAGGAG 1 cut(s) 528
BseXI GCAGC 1 cut(s) 10
BseYI CCCAGC 2 cut(s) 290, 994
BshFI GGCC 3 cut(s) 526, 719, 882
BsiHKAI GWGCWC 2 cut(s) 714, 1258
BsiHKCI CYCGRG 1 cut(s) 1210
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 1 cut(s) 672
BsmAI GTCTC 3 cut(s) 134, 423, 1222
BsmBI CGTCTC 2 cut(s) 423, 1222
BsmFI GGGAC 1 cut(s) 454
BsmI GAATGC 1 cut(s) 576
BsnI GGCC 3 cut(s) 526, 719, 882
BsoBI CYCGRG 1 cut(s) 1210
Bsp1286I GDGCHC 2 cut(s) 714, 1258
Bsp143I GATC 9 cut(s) 185, 316, 358, 367, 662, 788, 1029, 1111, 1138
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 2 cut(s) 376, 574
BspANI GGCC 3 cut(s) 526, 719, 882
BspCNI CTCAG 4 cut(s) 700, 853, 943, 1218
BspLI GGNNCC 4 cut(s) 664, 1173, 1246, 1262
BspMI ACCTGC 1 cut(s) 501
BspOI GCTAGC 1 cut(s) 507
BspPI GGATC 5 cut(s) 193, 657, 670, 783, 1024
BsrDI GCAATG 2 cut(s) 440, 652
BsrI ACTGG 2 cut(s) 792, 1188
BssECI CCNNGG 3 cut(s) 342, 667, 1209
BssMI GATC 9 cut(s) 185, 316, 358, 367, 662, 788, 1029, 1111, 1138
BssNI GRCGYC 1 cut(s) 971
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 1 cut(s) 406
Bst6I CTCTTC 2 cut(s) 132, 216
BstACI GRCGYC 1 cut(s) 971
BstC8I GCNNGC 4 cut(s) 505, 699, 939, 1000
BstDEI CTNAG 4 cut(s) 708, 861, 951, 1226
BstDSI CCRYGG 2 cut(s) 342, 667
BstF5I GGATG 4 cut(s) 352, 455, 479, 1184
BstKTI GATC 9 cut(s) 188, 319, 361, 370, 665, 791, 1032, 1114, 1141
BstMAI GTCTC 3 cut(s) 134, 423, 1222
BstMBI GATC 9 cut(s) 185, 316, 358, 367, 662, 788, 1029, 1111, 1138
BstMWI GCNNNNNNNGC 6 cut(s) 556, 947, 970, 1008, 1058, 1149
BstNI CCWGG 1 cut(s) 582
BstNSI RCATGY 5 cut(s) 245, 701, 837, 933, 941
BstSCI CCNGG 1 cut(s) 580
BstV1I GCAGC 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 5 cut(s) 185, 662, 788, 1029, 1111
BstYI RGATCY 5 cut(s) 185, 662, 788, 1029, 1111
BsuRI GGCC 3 cut(s) 526, 719, 882
BtgI CCRYGG 2 cut(s) 342, 667
BtsCI GGATG 4 cut(s) 352, 455, 479, 1184
BtsI GCAGTG 1 cut(s) 1159
BtsIMutI CAGTG 2 cut(s) 411, 1159
BveI ACCTGC 1 cut(s) 501
Cac8I GCNNGC 4 cut(s) 505, 699, 939, 1000
Cfr13I GGNCC 2 cut(s) 1172, 1260
CseI GACGC 2 cut(s) 456, 979
DdeI CTNAG 4 cut(s) 708, 861, 951, 1226
DpnI GATC 9 cut(s) 187, 318, 360, 369, 664, 790, 1031, 1113, 1140
DpnII GATC 9 cut(s) 185, 316, 358, 367, 662, 788, 1029, 1111, 1138
DraI TTTAAA 1 cut(s) 1074
DrdI GACNNNNNNGTC 1 cut(s) 385
DseDI GACNNNNNNGTC 1 cut(s) 385
EaeI YGGCCR 2 cut(s) 717, 880
Eam1104I CTCTTC 2 cut(s) 132, 216
EarI CTCTTC 2 cut(s) 132, 216
Ecl136II GAGCTC 1 cut(s) 712
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 714
Eco32I GATATC 1 cut(s) 979
Eco47I GGWCC 2 cut(s) 1172, 1260
Eco53kI GAGCTC 1 cut(s) 712
Eco57I CTGAAG 4 cut(s) 210, 297, 300, 636
Eco88I CYCGRG 1 cut(s) 1210
EcoICRI GAGCTC 1 cut(s) 712
EcoO109I RGGNCCY 1 cut(s) 1172
EcoRII CCWGG 1 cut(s) 580
EcoRV GATATC 1 cut(s) 979
EcoT14I CCWWGG 1 cut(s) 342
EcoT22I ATGCAT 2 cut(s) 699, 703
EcoT38I GRGCYC 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 342
Esp3I CGTCTC 2 cut(s) 423, 1222
FalI AAGNNNNNCTT 4 cut(s) 727, 759, 1283, 1315
FaqI GGGAC 1 cut(s) 454
FauNDI CATATG 2 cut(s) 372, 966
Fnu4HI GCNGC 2 cut(s) 24, 574
FokI GGATG 4 cut(s) 359, 442, 466, 1171
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 2 cut(s) 24, 574
FspBI CTAG 6 cut(s) 27, 356, 504, 657, 1080, 1109
GluI GCNGC 2 cut(s) 24, 574
GsaI CCCAGC 2 cut(s) 294, 998
HaeIII GGCC 3 cut(s) 526, 719, 882
HgaI GACGC 2 cut(s) 456, 979
Hin1I GRCGYC 1 cut(s) 971
HincII GTYRAC 2 cut(s) 390, 858
HindII GTYRAC 2 cut(s) 390, 858
HinfI GANTC 9 cut(s) 64, 203, 386, 395, 650, 755, 1099, 1124, 1273
HpaI GTTAAC 1 cut(s) 858
HphI GGTGA 4 cut(s) 81, 146, 482, 585
Hpy166II GTNNAC 3 cut(s) 390, 858, 1157
Hpy188III TCNNGA 5 cut(s) 330, 356, 773, 1115, 1212
Hpy8I GTNNAC 3 cut(s) 390, 858, 1157
HpyAV CCTTC 3 cut(s) 275, 456, 1285
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4V TGCA 8 cut(s) 70, 350, 425, 697, 701, 829, 920, 1011
HpyF10VI GCNNNNNNNGC 6 cut(s) 556, 947, 970, 1008, 1058, 1149
HpyF3I CTNAG 4 cut(s) 708, 861, 951, 1226
Hsp92I GRCGYC 1 cut(s) 971
KspAI GTTAAC 1 cut(s) 858
Kzo9I GATC 9 cut(s) 185, 316, 358, 367, 662, 788, 1029, 1111, 1138
LmnI GCTCC 5 cut(s) 99, 636, 642, 961, 1250
Lsp1109I GCAGC 1 cut(s) 10
LweI GCATC 3 cut(s) 79, 337, 1193
MaeI CTAG 6 cut(s) 27, 356, 504, 657, 1080, 1109
MaeIII GTNAC 1 cut(s) 625
MalI GATC 9 cut(s) 187, 318, 360, 369, 664, 790, 1031, 1113, 1140
MboI GATC 9 cut(s) 185, 316, 358, 367, 662, 788, 1029, 1111, 1138
MboII GAAGA 6 cut(s) 149, 233, 261, 629, 790, 1291
MflI RGATCY 5 cut(s) 185, 662, 788, 1029, 1111
MhlI GDGCHC 2 cut(s) 714, 1258
MlsI TGGCCA 2 cut(s) 719, 882
MluCI AATT 3 cut(s) 197, 609, 801
MluNI TGGCCA 2 cut(s) 719, 882
MlyI GAGTC 3 cut(s) 212, 395, 764
MmeI TCCRAC 2 cut(s) 216, 1248
Mox20I TGGCCA 2 cut(s) 719, 882
Mph1103I ATGCAT 2 cut(s) 699, 703
MroXI GAANNNNTTC 2 cut(s) 337, 1295
MscI TGGCCA 2 cut(s) 719, 882
MseI TTAA 4 cut(s) 554, 768, 857, 1073
MslI CAYNNNNRTG 3 cut(s) 75, 94, 341
Msp20I TGGCCA 2 cut(s) 719, 882
MspR9I CCNGG 1 cut(s) 582
Mva1269I GAATGC 1 cut(s) 576
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 6 cut(s) 556, 947, 970, 1008, 1058, 1149
NcoI CCATGG 1 cut(s) 342
NdeI CATATG 2 cut(s) 372, 966
NdeII GATC 9 cut(s) 185, 316, 358, 367, 662, 788, 1029, 1111, 1138
NheI GCTAGC 1 cut(s) 503
NlaIV GGNNCC 4 cut(s) 664, 1173, 1246, 1262
NsiI ATGCAT 2 cut(s) 699, 703
NspI RCATGY 5 cut(s) 245, 701, 837, 933, 941
PaeI GCATGC 2 cut(s) 701, 941
PaqCI CACCTGC 1 cut(s) 501
PciI ACATGT 3 cut(s) 241, 833, 929
PctI GAATGC 1 cut(s) 576
PdmI GAANNNNTTC 2 cut(s) 337, 1295
PfeI GAWTC 6 cut(s) 64, 395, 650, 1099, 1124, 1273
PflFI GACNNNGTC 1 cut(s) 1264
PfoI TCCNGGA 1 cut(s) 580
PkrI GCNGC 2 cut(s) 25, 575
PleI GAGTC 3 cut(s) 211, 394, 763
PpsI GAGTC 3 cut(s) 211, 394, 763
PpuMI RGGWCCY 1 cut(s) 1172
PscI ACATGT 3 cut(s) 241, 833, 929
Psp124BI GAGCTC 1 cut(s) 714
Psp5II RGGWCCY 1 cut(s) 1172
Psp6I CCWGG 1 cut(s) 580
PspFI CCCAGC 2 cut(s) 290, 994
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 4 cut(s) 664, 1173, 1246, 1262
PspPI GGNCC 2 cut(s) 1172, 1260
PspPPI RGGWCCY 1 cut(s) 1172
PsuI RGATCY 5 cut(s) 185, 662, 788, 1029, 1111
PsyI GACNNNGTC 1 cut(s) 1264
RseI CAYNNNNRTG 3 cut(s) 75, 94, 341
SacI GAGCTC 1 cut(s) 714
SaqAI TTAA 4 cut(s) 554, 768, 857, 1073
SatI GCNGC 2 cut(s) 24, 574
Sau3AI GATC 9 cut(s) 185, 316, 358, 367, 662, 788, 1029, 1111, 1138
Sau96I GGNCC 2 cut(s) 1172, 1260
SchI GAGTC 3 cut(s) 212, 395, 764
ScrFI CCNGG 1 cut(s) 582
SduI GDGCHC 2 cut(s) 714, 1258
SfaNI GCATC 3 cut(s) 79, 337, 1193
SinI GGWCC 2 cut(s) 1172, 1260
SmiMI CAYNNNNRTG 3 cut(s) 75, 94, 341
SphI GCATGC 2 cut(s) 701, 941
Sse9I AATT 3 cut(s) 197, 609, 801
SsiI CCGC 2 cut(s) 376, 574
SspMI CTAG 6 cut(s) 27, 356, 504, 657, 1080, 1109
SstI GAGCTC 1 cut(s) 714
StyD4I CCNGG 1 cut(s) 580
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 406
TaqI TCGA 3 cut(s) 366, 541, 1102
TasI AATT 3 cut(s) 197, 609, 801
TauI GCSGC 1 cut(s) 576
TfiI GAWTC 6 cut(s) 64, 395, 650, 1099, 1124, 1273
Tru1I TTAA 4 cut(s) 554, 768, 857, 1073
Tru9I TTAA 4 cut(s) 554, 768, 857, 1073
TscAI CASTG 2 cut(s) 411, 1159
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 3 cut(s) 429, 444, 663
TspGWI ACGGA 2 cut(s) 222, 405
TspRI CASTG 2 cut(s) 411, 1159
Tth111I GACNNNGTC 1 cut(s) 1264
VpaK11BI GGWCC 2 cut(s) 1172, 1260
XapI RAATTY 2 cut(s) 197, 801
XbaI TCTAGA 1 cut(s) 355
XceI RCATGY 5 cut(s) 245, 701, 837, 933, 941
XmnI GAANNNNTTC 2 cut(s) 337, 1295
XspI CTAG 6 cut(s) 27, 356, 504, 657, 1080, 1109
Zsp2I ATGCAT 2 cut(s) 699, 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.