Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003742

Physical Location & Seq

Genomic Coordinates Reverse (-)

18229094 .. 18232202

Gene Structure 3109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G39140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGGGAATGCGTGTTGTGTTGCTGCTCGAGACAAAATGGTGGTGCCTAATTCATCAGCTGGTGAGAATTTGCAGAGGAGCAATATCAGGCATTCTCCGTCTTGGAGTTTCCGGTGGGATAATAGAGGGCGTGTAGCTGGTGAAGAAACTTCTCTCAGTTGGTTATCTGATGGTATTAGTCGGAACGATGGCTCTGAGATCAAATTTGAATCTGCTTTCGTATCATCTGAAGGGTCCCCTTTGGACAGTTTTCGGACACAGACATTGCAAAAATCTCCTGCCTCAGATCTATCTTTTCCAAGAAATTCTTCCATGAATACAGTCTTCGAACAGAAAGAAAATGTTTCAACAGAGTCTGCAGCACCATCATATCTATCTCCTGCACAGTTGTCTCTTTCACTAGCTTCACAACCATCATCTTTCCCTACGTCACCACTTTCGTCCCAAAGCTACTTGCACCCTGCAAGTTCATCTACACTTAAACTGACACAGCACCCTCGTCTATCAAAGCAAGTCTCAGATGGTCAAATCTATGGTCAGAACTCACTAAGTAGAAGCTCAGCAACTGAAGAGAGGCAGGGAACTCCTACGAGATATGATTCGTCTCAGTCTGGACCATCTGAAGGTTGGTCTCTACAAGCCTTTTCTGAAATGATGTCATCTTCTCGCAGCAACAAGGCTCTGTCTTATGACAATTATGACAATGATTGTTTTGGGCTTCAACGTGACAAGATTGACCATCATGGCAACCGGATGTCCAAGCATCAGCAGCATACCTGCGGTGCTTGCTCTAGACCCTTGTCGGAGAAATCCTTGTGGAGCAGCCAAAAGATCTTTATGACCAACGAGCTCTCTGTATCTGCAATTCTAGCTTGTGGGCATGTCTATCATGGGGAGTGTTTAGAGCAGATGACGCCGGAAATTGATAAATTCGACCCTTCATGCCCAATATGTACAATGGGTGAGAAGAAAACAGCGAAGCTGTCAGAGAAAGCGTTGAAAGTAGAGATGGATTTGAAAGCGAGACACAACAAAAGACTCAGAAACCGAGTTTTGGACAGTGACTTTGATTGCGATGATTTTGTAATGTTTGACCACAGCCACAGGACAGCAGCAGCAGCAAGCAAGAGCCCTAGACTCGTCTCAAGTTCGAGTGCTAAAAGCTATTCAGCAAAGCCTTTCTTGGCTCGACACTTCTCTTTCGGGTCCAGAAGTAACTATAAATCCCCTAAAGAAAATCTTCCTGTGAAAAAGAAAGGCTTCTTCTGGACCAAATCCAGCAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

429

Amino Acids

47.55

Weight (kDa)

9.04

Isoelectric Point (pI)

68.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21500 AT2G21500 AT4G39140 AT4G39140 AT4G39140 AT4G39140 AT4G39140
fragaria_vesca	FvH4_2g09590 FvH4_2g09590 FvH4_2g09590
malus_domestica	MD05G1061300.v1.1 MD10G1069100.v1.1
prunus_persica	Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1
pyrus_communis	pycom05g05240 pycom10g05510
rosa_chinensis	RchiOBHm_Chr6g0265921
rosa_laevigata	RLG00000014146
rosa_multiflora	Rmu_co8229217.1_g000001 Rmu_sc0019932.1_g000001
rosa_roxburghii	Rroxscaffold_7G00202200
rosa_rugosa	Rorug06G0021400.1 Rorug06G0021500 Rorug06G0021600.1 Rorug06G0021700
rosa_samantha	Rh6AG142900 Rh6BG143000 Rh6CG139600 Rh6DG127300
rosa_wichuraiana	Rw6G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	785
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	1 cut(s)	780
AcsI	RAATTY	4 cut(s)	67, 203, 304, 929
AcuI	CTGAAG	3 cut(s)	249, 588, 642
AcyI	GRCGYC	1 cut(s)	914
AfaI	GTAC	1 cut(s)	955
AfiI	CCNNNNNNNGG	2 cut(s)	623, 1054
AgsI	TTSAA	5 cut(s)	209, 348, 722, 1000, 1018
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AluBI	AGCT	9 cut(s)	59, 137, 404, 450, 558, 850, 872, 982, 1164
AluI	AGCT	9 cut(s)	59, 137, 404, 450, 558, 850, 872, 982, 1164
Alw21I	GWGCWC	1 cut(s)	852
Alw26I	GTCTC	7 cut(s)	24, 396, 520, 609, 636, 1018, 1147
AlwNI	CAGNNNCTG	2 cut(s)	356, 566
Ama87I	CYCGRG	1 cut(s)	27
ApeKI	GCWGC	8 cut(s)	23, 359, 669, 769, 822, 1112, 1115, 1118
ApoI	RAATTY	4 cut(s)	67, 203, 304, 929
ArsI	GACNNNNNNTTYG	4 cut(s)	520, 552, 1049, 1081
Asp700I	GAANNNNTTC	3 cut(s)	307, 1239, 1259
AspS9I	GGNCC	4 cut(s)	234, 614, 1206, 1269
AsuHPI	GGTGA	4 cut(s)	74, 152, 423, 974
AsuII	TTCGAA	1 cut(s)	327
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	4 cut(s)	234, 614, 1206, 1269
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	2 cut(s)	852, 1133
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	852
BbvI	GCAGC	8 cut(s)	10, 371, 681, 781, 834, 1124, 1127, 1130
BccI	CCATC	8 cut(s)	164, 182, 373, 421, 515, 625, 747, 1003
BcoDI	GTCTC	7 cut(s)	24, 396, 520, 609, 636, 1018, 1147
BfaI	CTAG	4 cut(s)	401, 792, 869, 1134
BfmI	CTRYAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	785
BglII	AGATCT	2 cut(s)	286, 831
BisI	GCNGC	8 cut(s)	24, 360, 670, 770, 823, 1113, 1116, 1119
BlpI	GCTNAGC	1 cut(s)	559
BlsI	GCNGC	8 cut(s)	25, 361, 671, 771, 824, 1114, 1117, 1120
Bme18I	GGWCC	4 cut(s)	234, 614, 1206, 1269
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	4 cut(s)	234, 614, 1206, 1269
BmiI	GGNNCC	4 cut(s)	45, 235, 236, 1207
BmsI	GCATC	1 cut(s)	772
BoxI	GACNNNNGTC	1 cut(s)	799
BpiI	GAAGAC	1 cut(s)	316
Bpu1102I	GCTNAGC	1 cut(s)	559
Bpu14I	TTCGAA	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	1129
BsaHI	GRCGYC	1 cut(s)	914
BsaI	GGTCTC	1 cut(s)	636
BsaWI	WCCGGW	2 cut(s)	111, 750
Bsc4I	CCNNNNNNNGG	2 cut(s)	623, 1054
Bse3DI	GCAATG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	759
BseLI	CCNNNNNNNGG	2 cut(s)	623, 1054
BseMI	GCAATG	1 cut(s)	263
BseMII	CTCAG	7 cut(s)	169, 186, 297, 531, 573, 620, 1054
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	8 cut(s)	10, 371, 681, 781, 834, 1124, 1127, 1130
BsgI	GTGCAG	1 cut(s)	366
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	852
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	3 cut(s)	112, 751, 917
BslFI	GGGAC	2 cut(s)	220, 427
BslI	CCNNNNNNNGG	2 cut(s)	623, 1054
BsmAI	GTCTC	7 cut(s)	24, 396, 520, 609, 636, 1018, 1147
BsmBI	CGTCTC	2 cut(s)	609, 1147
BsmFI	GGGAC	2 cut(s)	220, 427
BsmI	GAATGC	2 cut(s)	13, 91
Bso31I	GGTCTC	1 cut(s)	636
BsoBI	CYCGRG	1 cut(s)	27
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	2 cut(s)	852, 1133
Bsp1407I	TGTACA	1 cut(s)	953
Bsp143I	GATC	3 cut(s)	198, 286, 831
Bsp1720I	GCTNAGC	1 cut(s)	559
BspACI	CCGC	1 cut(s)	780
BspCNI	CTCAG	7 cut(s)	168, 187, 296, 530, 572, 619, 1053
BspLI	GGNNCC	4 cut(s)	45, 235, 236, 1207
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	785
BspT104I	TTCGAA	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	263
BsrGI	TGTACA	1 cut(s)	953
BssMI	GATC	3 cut(s)	198, 286, 831
BssNI	GRCGYC	1 cut(s)	914
Bst4CI	ACNGT	4 cut(s)	248, 322, 387, 1061
Bst6I	CTCTTC	1 cut(s)	564
BstACI	GRCGYC	1 cut(s)	914
BstAUI	TGTACA	1 cut(s)	953
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	787, 1123
BstDEI	CTNAG	8 cut(s)	155, 195, 283, 517, 548, 559, 606, 1040
BstF5I	GGATG	1 cut(s)	759
BstKTI	GATC	3 cut(s)	201, 289, 834
BstMAI	GTCTC	7 cut(s)	24, 396, 520, 609, 636, 1018, 1147
BstMBI	GATC	3 cut(s)	198, 286, 831
BstMWI	GCNNNNNNNGC	5 cut(s)	769, 786, 869, 913, 1118
BstNSI	RCATGY	1 cut(s)	884
BstPAI	GACNNNNGTC	1 cut(s)	799
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	8 cut(s)	10, 371, 681, 781, 834, 1124, 1127, 1130
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	2 cut(s)	286, 831
BstYI	RGATCY	2 cut(s)	286, 831
BtgZI	GCGATG	1 cut(s)	1089
BtsCI	GGATG	1 cut(s)	759
BtsIMutI	CAGTG	1 cut(s)	1066
BveI	ACCTGC	1 cut(s)	785
Cac8I	GCNNGC	2 cut(s)	787, 1123
CaiI	CAGNNNCTG	2 cut(s)	356, 566
Cfr13I	GGNCC	4 cut(s)	234, 614, 1206, 1269
CseI	GACGC	1 cut(s)	922
Csp6I	GTAC	1 cut(s)	954
CviAII	CATG	5 cut(s)	313, 743, 881, 890, 942
CviQI	GTAC	1 cut(s)	954
DdeI	CTNAG	8 cut(s)	155, 195, 283, 517, 548, 559, 606, 1040
DpnI	GATC	3 cut(s)	200, 288, 833
DpnII	GATC	3 cut(s)	198, 286, 831
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Ecl136II	GAGCTC	1 cut(s)	850
Eco24I	GRGCYC	2 cut(s)	852, 1133
Eco31I	GGTCTC	1 cut(s)	636
Eco47I	GGWCC	4 cut(s)	234, 614, 1206, 1269
Eco53kI	GAGCTC	1 cut(s)	850
Eco57I	CTGAAG	3 cut(s)	249, 588, 642
Eco88I	CYCGRG	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	850
EcoO109I	RGGNCCY	1 cut(s)	234
EcoT38I	GRGCYC	2 cut(s)	852, 1133
Esp3I	CGTCTC	2 cut(s)	609, 1147
FaeI	CATG	5 cut(s)	316, 746, 884, 893, 945
FalI	AAGNNNNNCTT	8 cut(s)	292, 324, 1166, 1198, 1224, 1256, 1244, 1276
FaqI	GGGAC	2 cut(s)	220, 427
FatI	CATG	5 cut(s)	312, 742, 880, 889, 941
Fnu4HI	GCNGC	8 cut(s)	24, 360, 670, 770, 823, 1113, 1116, 1119
FokI	GGATG	1 cut(s)	766
FriOI	GRGCYC	2 cut(s)	852, 1133
Fsp4HI	GCNGC	8 cut(s)	24, 360, 670, 770, 823, 1113, 1116, 1119
FspBI	CTAG	4 cut(s)	401, 792, 869, 1134
GluI	GCNGC	8 cut(s)	24, 360, 670, 770, 823, 1113, 1116, 1119
HapII	CCGG	3 cut(s)	112, 751, 917
HgaI	GACGC	1 cut(s)	922
Hin1I	GRCGYC	1 cut(s)	914
Hin1II	CATG	5 cut(s)	316, 746, 884, 893, 945
HinfI	GANTC	5 cut(s)	209, 353, 599, 1038, 1137
HpaII	CCGG	3 cut(s)	112, 751, 917
HphI	GGTGA	4 cut(s)	74, 152, 423, 974
Hpy188III	TCNNGA	5 cut(s)	29, 612, 792, 1209, 1267
HpyAV	CCTTC	3 cut(s)	224, 617, 948
HpyCH4III	ACNGT	4 cut(s)	248, 322, 387, 1061
HpyCH4IV	ACGT	2 cut(s)	428, 724
HpyCH4V	TGCA	7 cut(s)	73, 268, 359, 383, 457, 464, 863
HpyF10VI	GCNNNNNNNGC	5 cut(s)	769, 786, 869, 913, 1118
HpyF3I	CTNAG	8 cut(s)	155, 195, 283, 517, 548, 559, 606, 1040
HpySE526I	ACGT	2 cut(s)	428, 724
Hsp92I	GRCGYC	1 cut(s)	914
Hsp92II	CATG	5 cut(s)	316, 746, 884, 893, 945
KflI	GGGWCCC	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	198, 286, 831
LmnI	GCTCC	2 cut(s)	78, 819
Lsp1109I	GCAGC	8 cut(s)	10, 371, 681, 781, 834, 1124, 1127, 1130
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	4 cut(s)	401, 792, 869, 1134
MaeII	ACGT	2 cut(s)	428, 724
MaeIII	GTNAC	4 cut(s)	429, 725, 1061, 1214
MalI	GATC	3 cut(s)	200, 288, 833
MboI	GATC	3 cut(s)	198, 286, 831
MboII	GAAGA	8 cut(s)	155, 300, 316, 581, 654, 979, 1232, 1255
MflI	RGATCY	2 cut(s)	286, 831
MhlI	GDGCHC	2 cut(s)	852, 1133
MluCI	AATT	8 cut(s)	49, 67, 203, 304, 694, 864, 921, 929
MlyI	GAGTC	3 cut(s)	362, 1032, 1131
MmeI	TCCRAC	2 cut(s)	161, 783
MnlI	CCTC	5 cut(s)	69, 119, 292, 507, 567
MroXI	GAANNNNTTC	3 cut(s)	307, 1239, 1259
MseI	TTAA	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	3 cut(s)	112, 751, 917
Mva1269I	GAATGC	2 cut(s)	13, 91
MwoI	GCNNNNNNNGC	5 cut(s)	769, 786, 869, 913, 1118
NdeII	GATC	3 cut(s)	198, 286, 831
NlaIII	CATG	5 cut(s)	316, 746, 884, 893, 945
NlaIV	GGNNCC	4 cut(s)	45, 235, 236, 1207
NmuCI	GTSAC	3 cut(s)	429, 725, 1061
NspI	RCATGY	1 cut(s)	884
NspV	TTCGAA	1 cut(s)	327
PaeR7I	CTCGAG	1 cut(s)	27
PctI	GAATGC	2 cut(s)	13, 91
PdmI	GAANNNNTTC	3 cut(s)	307, 1239, 1259
PfeI	GAWTC	2 cut(s)	209, 599
PkrI	GCNGC	8 cut(s)	25, 361, 671, 771, 824, 1114, 1117, 1120
PleI	GAGTC	3 cut(s)	361, 1032, 1131
PpsI	GAGTC	3 cut(s)	361, 1032, 1131
PpuMI	RGGWCCY	1 cut(s)	234
PshAI	GACNNNNGTC	1 cut(s)	799
Psp124BI	GAGCTC	1 cut(s)	852
Psp5II	RGGWCCY	1 cut(s)	234
PspN4I	GGNNCC	4 cut(s)	45, 235, 236, 1207
PspPI	GGNCC	4 cut(s)	234, 614, 1206, 1269
PspPPI	RGGWCCY	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	361
PstNI	CAGNNNCTG	2 cut(s)	356, 566
PsuI	RGATCY	2 cut(s)	286, 831
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	955
RsaNI	GTAC	1 cut(s)	954
SacI	GAGCTC	1 cut(s)	852
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	8 cut(s)	24, 360, 670, 770, 823, 1113, 1116, 1119
Sau3AI	GATC	3 cut(s)	198, 286, 831
Sau96I	GGNCC	4 cut(s)	234, 614, 1206, 1269
SchI	GAGTC	3 cut(s)	362, 1032, 1131
SduI	GDGCHC	2 cut(s)	852, 1133
SfaNI	GCATC	1 cut(s)	772
SfcI	CTRYAG	1 cut(s)	357
Sfr274I	CTCGAG	1 cut(s)	27
SfuI	TTCGAA	1 cut(s)	327
SinI	GGWCC	4 cut(s)	234, 614, 1206, 1269
SlaI	CTCGAG	1 cut(s)	27
SmlI	CTYRAG	2 cut(s)	27, 1144
SmoI	CTYRAG	2 cut(s)	27, 1144
Sse9I	AATT	8 cut(s)	49, 67, 203, 304, 694, 864, 921, 929
SsiI	CCGC	1 cut(s)	780
SspMI	CTAG	4 cut(s)	401, 792, 869, 1134
SstI	GAGCTC	1 cut(s)	852
TaaI	ACNGT	4 cut(s)	248, 322, 387, 1061
TaiI	ACGT	2 cut(s)	431, 727
TaqI	TCGA	5 cut(s)	28, 327, 933, 1151, 1189
TasI	AATT	8 cut(s)	49, 67, 203, 304, 694, 864, 921, 929
TatI	WGTACW	1 cut(s)	953
TfiI	GAWTC	2 cut(s)	209, 599
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	1066
TseFI	GTSAC	3 cut(s)	429, 725, 1061
TseI	GCWGC	8 cut(s)	23, 359, 669, 769, 822, 1112, 1115, 1118
Tsp45I	GTSAC	3 cut(s)	429, 725, 1061
TspDTI	ATGAA	4 cut(s)	42, 329, 459, 930
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	1066
VpaK11BI	GGWCC	4 cut(s)	234, 614, 1206, 1269
XapI	RAATTY	4 cut(s)	67, 203, 304, 929
XbaI	TCTAGA	1 cut(s)	791
XceI	RCATGY	1 cut(s)	884
XcmI	CCANNNNNNNNNTGG	1 cut(s)	624
XhoI	CTCGAG	1 cut(s)	27
XmnI	GAANNNNTTC	3 cut(s)	307, 1239, 1259
XspI	CTAG	4 cut(s)	401, 792, 869, 1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.