Rmu_co8229217.1_g000001

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8229217.1
OG0003742
Physical Location & Seq
Reverse (-)
1 .. 426
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8229217.1_g000001.1.cds

Sequence Viewer

Length: 316 bp
atggggtctgcttgttgtgtcgctgctagagacaagacaataacaaccagagctaatagtgaaaatctgcatcgtaatgttcgatattcacccacgtggagctttcgatgggataacagagtcggggtagcagctgaagagaattctgtaagttggctttctgatgggattagcagaaatgatggatctgaagttaaatttgagtcggcatgtgtatcagaagagggaagtccgttggaacatttacaaagacatgctgcgcagaagtcttcagtttctgaaggaactgctgcgagtgtgagaacccctgcttcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

105

Amino Acids

11.38

Weight (kDa)

6.28

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 261
AclWI GGATC 1 cut(s) 193
AcsI RAATTY 2 cut(s) 142, 197
AcuI CTGAAG 5 cut(s) 156, 210, 255, 297, 300
AcvI CACGTG 1 cut(s) 96
AleI CACNNNNGTG 1 cut(s) 94
AluBI AGCT 3 cut(s) 53, 102, 134
AluI AGCT 3 cut(s) 53, 102, 134
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 278
ApeKI GCWGC 4 cut(s) 23, 131, 257, 290
ApoI RAATTY 2 cut(s) 142, 197
AspLEI GCGC 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 81
BbrPI CACGTG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 4 cut(s) 10, 143, 244, 277
BccI CCATC 3 cut(s) 102, 158, 176
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 27
BisI GCNGC 4 cut(s) 24, 132, 258, 291
BlsI GCNGC 4 cut(s) 25, 133, 259, 292
BmsI GCATC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 261
BsaAI YACGTR 1 cut(s) 96
BseXI GCAGC 4 cut(s) 10, 143, 244, 277
BsmAI GTCTC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 185
BspPI GGATC 1 cut(s) 193
BssMI GATC 1 cut(s) 185
Bst6I CTCTTC 2 cut(s) 132, 216
BstBAI YACGTR 1 cut(s) 96
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 1 cut(s) 188
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 1 cut(s) 185
BstNSI RCATGY 2 cut(s) 213, 257
BstV1I GCAGC 4 cut(s) 10, 143, 244, 277
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
CaiI CAGNNNCTG 1 cut(s) 278
CfoI GCGC 1 cut(s) 262
CviAII CATG 2 cut(s) 210, 254
CviJI RGCY 4 cut(s) 53, 102, 134, 157
CviKI_1 RGCY 4 cut(s) 53, 102, 134, 157
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
Eam1104I CTCTTC 2 cut(s) 132, 216
EarI CTCTTC 2 cut(s) 132, 216
Eco57I CTGAAG 5 cut(s) 156, 210, 255, 297, 300
Eco72I CACGTG 1 cut(s) 96
EcoRI GAATTC 1 cut(s) 142
FaeI CATG 2 cut(s) 213, 257
FaiI YATR 2 cut(s) 211, 255
FatI CATG 2 cut(s) 209, 253
Fnu4HI GCNGC 4 cut(s) 24, 132, 258, 291
Fsp4HI GCNGC 4 cut(s) 24, 132, 258, 291
FspBI CTAG 1 cut(s) 27
FspI TGCGCA 1 cut(s) 261
GlaI GCGC 1 cut(s) 261
GluI GCNGC 4 cut(s) 24, 132, 258, 291
HhaI GCGC 1 cut(s) 262
Hin1II CATG 2 cut(s) 213, 257
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 2 cut(s) 120, 203
HphI GGTGA 1 cut(s) 81
Hpy188I TCNGA 4 cut(s) 163, 190, 220, 280
HpyAV CCTTC 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 2 cut(s) 213, 257
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 1 cut(s) 185
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 1 cut(s) 61
Lsp1109I GCAGC 4 cut(s) 10, 143, 244, 277
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 95
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MboII GAAGA 3 cut(s) 149, 233, 261
MflI RGATCY 1 cut(s) 185
MluCI AATT 2 cut(s) 142, 197
MlyI GAGTC 2 cut(s) 129, 212
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 1 cut(s) 217
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 2 cut(s) 75, 94
MspA1I CMGCKG 1 cut(s) 134
NdeII GATC 1 cut(s) 185
NlaIII CATG 2 cut(s) 213, 257
NsbI TGCGCA 1 cut(s) 261
NspI RCATGY 2 cut(s) 213, 257
OliI CACNNNNGTG 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PkrI GCNGC 4 cut(s) 25, 133, 259, 292
PleI GAGTC 2 cut(s) 128, 211
PmaCI CACGTG 1 cut(s) 96
PmlI CACGTG 1 cut(s) 96
PpsI GAGTC 2 cut(s) 128, 211
Ppu21I YACGTR 1 cut(s) 96
PspCI CACGTG 1 cut(s) 96
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 134
RseI CAYNNNNRTG 2 cut(s) 75, 94
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 4 cut(s) 24, 132, 258, 291
Sau3AI GATC 1 cut(s) 185
SchI GAGTC 2 cut(s) 129, 212
SetI ASST 4 cut(s) 55, 98, 104, 136
SfaNI GCATC 1 cut(s) 79
SmiMI CAYNNNNRTG 2 cut(s) 75, 94
Sse9I AATT 2 cut(s) 142, 197
SspMI CTAG 1 cut(s) 27
TaiI ACGT 1 cut(s) 98
TaqI TCGA 2 cut(s) 82, 106
TasI AATT 2 cut(s) 142, 197
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 4 cut(s) 23, 131, 257, 290
TspGWI ACGGA 1 cut(s) 222
XapI RAATTY 2 cut(s) 142, 197
XceI RCATGY 2 cut(s) 213, 257
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.