Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003742

Physical Location & Seq

Genomic Coordinates Reverse (-)

50128154 .. 50133297

Gene Structure 5144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGGGTCTGCTTGTTGTGTCGCTGCTAGAGATAAGACAATAACAACCAGAGCCAATAGTGAAAATCTGCATCGTAATGTTCGATATTCACCCACGTGGAGCTTTCGATGGGATAACAGAGTTGGGGTAGCAGCTGAAGAGACTTCTGTAAGTTGGCTTTCTGATGGGATTAGCAGAAATGATGGATCTGAAGTTAAATTTGGGTCGGCATGTGTATCAGAAGAGGGAAGTCCGTTGGAGCATTTACAAAGACATGCCACGCAGAAGTCTTCAGTTTCTGAAGGAACTGCTGGGAGTGTGAGAACCCCTGCTTCAGATCAATCTATTTCAAGAAACATTTCCATGGATGCCAGTCTAGAACAGGTAGATCATATGCAAACAAAGGAGTCAACGGAATCCCCAACAGTGTCATACCCATCTCCTGCAAAGCTATCAGTTTCATTGCCTTCTACTTCATCCTTGTCCACGTCCCCGTTGTCATCCCAATGTCACCTGCCTCCTGCTAGCTCAACCCCGTCGAGGTGGCCTCGCTGTTCTCCTAGACATCAGCTATTAAGGCAAGTATCTGACAGCCGAATTCCAGGAAACAAATCACCAAGCTACCTCTCAATATCTGAAGATAGGGCAAGGCTCCCTTCATGGAGCAATGAATCTGCTAGGGGCTCCCATGGTGGGTCTTCAGATAGTTGGTCTATGCATGCATTTTCTGAGCTCATGGCCACATCTAATAGAGAAAGGTGGTCTTTTGATAGTGAATCCTTTGGCTTTAATCGTGAGAAGATAACTAGATCCAATAGCAGAATATCAGCTTCCCCCTCCGTTGATTTGCAGACATGTGGGATTTGCTCAAAGCTATTAACTGAGAAATCTTCGTGGAGTGGCCAAAAGTTTATTGCGAACAATGAGCTCTCTGTGGTTGCAGTGCTAACATGTGGGCATTCTTATCACGCTGAGTGTTTGGAGCATATGACGCCTGATATCAACAAGTATGACCCAGCTTGCCCTGTTTGCACCTTTGGGGAGAAACAGATCCATAAGTTGTCCGAAAAGGCATTGAAAGCTGAAATGGATTTGAAGGCTAGAAATAGGAGATCAAGGAATCGGGTGCTAGATCTTGATAGTGATTCTGCTGTGTTTGATCGCTTGAAAGGCAGTGGACATCAAGGAAAGGGTCCTAAGATGGCATCCAGTTCCAGCATGAGAAACTCCTCGGGAAAGCCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

408

Amino Acids

44.61

Weight (kDa)

8.83

Isoelectric Point (pI)

67.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21500 AT2G21500 AT4G39140 AT4G39140 AT4G39140 AT4G39140 AT4G39140
fragaria_vesca	FvH4_2g09590 FvH4_2g09590 FvH4_2g09590
malus_domestica	MD05G1061300.v1.1 MD10G1069100.v1.1
prunus_persica	Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1
pyrus_communis	pycom05g05240 pycom10g05510
rosa_chinensis	RchiOBHm_Chr6g0265921
rosa_laevigata	RLG00000014146
rosa_multiflora	Rmu_co8229217.1_g000001 Rmu_sc0019932.1_g000001
rosa_roxburghii	Rroxscaffold_7G00202200
rosa_rugosa	Rorug06G0021400.1 Rorug06G0021500 Rorug06G0021600.1 Rorug06G0021700
rosa_samantha	Rh6AG142900 Rh6BG143000 Rh6CG139600 Rh6DG127300
rosa_wichuraiana	Rw6G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	501
Acc36I	ACCTGC	1 cut(s)	501
AclWI	GGATC	3 cut(s)	193, 783, 1024
AcoI	YGGCCR	2 cut(s)	717, 880
AcsI	RAATTY	2 cut(s)	197, 576
AcuI	CTGAAG	7 cut(s)	156, 210, 255, 297, 300, 636, 663
AcvI	CACGTG	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	971
AfiI	CCNNNNNNNGG	2 cut(s)	519, 672
AflIII	ACRYGT	2 cut(s)	833, 929
AgsI	TTSAA	4 cut(s)	330, 1057, 1075, 1147
AjiI	CACGTC	1 cut(s)	468
AjnI	CCWGG	1 cut(s)	580
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AleI	CACNNNNGTG	1 cut(s)	94
Alw21I	GWGCWC	2 cut(s)	714, 909
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	3 cut(s)	193, 783, 1024
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	1210
AoxI	GGCC	3 cut(s)	524, 717, 880
ApeKI	GCWGC	2 cut(s)	23, 131
ApoI	RAATTY	2 cut(s)	197, 576
Asp700I	GAANNNNTTC	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	1172
AsuHPI	GGTGA	3 cut(s)	81, 482, 585
AsuNHI	GCTAGC	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	1210
AvaII	GGWCC	1 cut(s)	1172
BalI	TGGCCA	2 cut(s)	719, 882
BanII	GRGCYC	3 cut(s)	665, 714, 909
BbrPI	CACGTG	1 cut(s)	96
BbsI	GAAGAC	2 cut(s)	261, 669
Bbv12I	GWGCWC	2 cut(s)	714, 909
BbvI	GCAGC	2 cut(s)	10, 143
BccI	CCATC	5 cut(s)	102, 158, 176, 424, 1174
BciT130I	CCWGG	1 cut(s)	582
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	8 cut(s)	27, 356, 504, 540, 657, 786, 1080, 1109
BfuAI	ACCTGC	1 cut(s)	501
BglII	AGATCT	1 cut(s)	1111
BisI	GCNGC	2 cut(s)	24, 132
BlsI	GCNGC	2 cut(s)	25, 133
Bme1390I	CCNGG	1 cut(s)	582
Bme18I	GGWCC	1 cut(s)	1172
BmeT110I	CYCGRG	1 cut(s)	1210
BmgBI	CACGTC	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	1172
BmiI	GGNNCC	3 cut(s)	632, 664, 1173
BmrFI	CCNGG	1 cut(s)	582
BmsI	GCATC	3 cut(s)	79, 337, 1193
BmtI	GCTAGC	1 cut(s)	507
BpiI	GAAGAC	2 cut(s)	261, 669
BplI	GAGNNNNNCTC	2 cut(s)	511, 543
BsaAI	YACGTR	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	971
BsaJI	CCNNGG	3 cut(s)	342, 667, 1209
Bsc4I	CCNNNNNNNGG	2 cut(s)	519, 672
Bse1I	ACTGG	2 cut(s)	351, 1188
Bse3DI	GCAATG	2 cut(s)	440, 652
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	3 cut(s)	342, 667, 1209
BseGI	GGATG	4 cut(s)	352, 455, 479, 1184
BseLI	CCNNNNNNNGG	2 cut(s)	519, 672
BseMI	GCAATG	2 cut(s)	440, 652
BseMII	CTCAG	3 cut(s)	699, 852, 942
BseNI	ACTGG	2 cut(s)	351, 1188
BseRI	GAGGAG	1 cut(s)	1198
BseXI	GCAGC	2 cut(s)	10, 143
BseYI	CCCAGC	2 cut(s)	290, 994
BshFI	GGCC	3 cut(s)	526, 719, 882
BsiHKAI	GWGCWC	2 cut(s)	714, 909
BsiHKCI	CYCGRG	1 cut(s)	1210
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	2 cut(s)	519, 672
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	1 cut(s)	937
BsnI	GGCC	3 cut(s)	526, 719, 882
BsoBI	CYCGRG	1 cut(s)	1210
Bsp1286I	GDGCHC	3 cut(s)	665, 714, 909
Bsp143I	GATC	8 cut(s)	185, 316, 367, 788, 1029, 1091, 1111, 1138
Bsp19I	CCATGG	2 cut(s)	342, 667
BspANI	GGCC	3 cut(s)	526, 719, 882
BspCNI	CTCAG	3 cut(s)	700, 853, 943
BspLI	GGNNCC	3 cut(s)	632, 664, 1173
BspMI	ACCTGC	1 cut(s)	501
BspOI	GCTAGC	1 cut(s)	507
BspPI	GGATC	3 cut(s)	193, 783, 1024
BsrDI	GCAATG	2 cut(s)	440, 652
BsrI	ACTGG	2 cut(s)	351, 1188
BssECI	CCNNGG	3 cut(s)	342, 667, 1209
BssMI	GATC	8 cut(s)	185, 316, 367, 788, 1029, 1091, 1111, 1138
BssNI	GRCGYC	1 cut(s)	971
BssT1I	CCWWGG	2 cut(s)	342, 667
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	2 cut(s)	132, 216
BstACI	GRCGYC	1 cut(s)	971
BstBAI	YACGTR	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	505, 699, 1000
BstDEI	CTNAG	4 cut(s)	708, 861, 951, 1176
BstDSI	CCRYGG	2 cut(s)	342, 667
BstF5I	GGATG	4 cut(s)	352, 455, 479, 1184
BstKTI	GATC	8 cut(s)	188, 319, 370, 791, 1032, 1094, 1114, 1141
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	8 cut(s)	185, 316, 367, 788, 1029, 1091, 1111, 1138
BstMWI	GCNNNNNNNGC	5 cut(s)	556, 970, 1008, 1058, 1149
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	5 cut(s)	213, 257, 701, 837, 933
BstSCI	CCNGG	1 cut(s)	580
BstV1I	GCAGC	2 cut(s)	10, 143
BstV2I	GAAGAC	2 cut(s)	261, 669
BstX2I	RGATCY	4 cut(s)	185, 788, 1029, 1111
BstYI	RGATCY	4 cut(s)	185, 788, 1029, 1111
BsuRI	GGCC	3 cut(s)	526, 719, 882
BtgI	CCRYGG	2 cut(s)	342, 667
BtrI	CACGTC	1 cut(s)	468
BtsCI	GGATG	4 cut(s)	352, 455, 479, 1184
BtsI	GCAGTG	2 cut(s)	927, 1159
BtsIMutI	CAGTG	3 cut(s)	411, 927, 1159
BveI	ACCTGC	1 cut(s)	501
Cac8I	GCNNGC	3 cut(s)	505, 699, 1000
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	1172
CseI	GACGC	1 cut(s)	979
DdeI	CTNAG	4 cut(s)	708, 861, 951, 1176
DpnI	GATC	8 cut(s)	187, 318, 369, 790, 1031, 1093, 1113, 1140
DpnII	GATC	8 cut(s)	185, 316, 367, 788, 1029, 1091, 1111, 1138
EaeI	YGGCCR	2 cut(s)	717, 880
Eam1104I	CTCTTC	2 cut(s)	132, 216
EarI	CTCTTC	2 cut(s)	132, 216
Ecl136II	GAGCTC	2 cut(s)	712, 907
Eco130I	CCWWGG	2 cut(s)	342, 667
Eco24I	GRGCYC	3 cut(s)	665, 714, 909
Eco32I	GATATC	1 cut(s)	979
Eco47I	GGWCC	1 cut(s)	1172
Eco53kI	GAGCTC	2 cut(s)	712, 907
Eco57I	CTGAAG	7 cut(s)	156, 210, 255, 297, 300, 636, 663
Eco72I	CACGTG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	1210
EcoICRI	GAGCTC	2 cut(s)	712, 907
EcoO109I	RGGNCCY	1 cut(s)	1172
EcoRI	GAATTC	1 cut(s)	576
EcoRII	CCWGG	1 cut(s)	580
EcoRV	GATATC	1 cut(s)	979
EcoT14I	CCWWGG	2 cut(s)	342, 667
EcoT22I	ATGCAT	2 cut(s)	699, 703
EcoT38I	GRGCYC	3 cut(s)	665, 714, 909
ErhI	CCWWGG	2 cut(s)	342, 667
FalI	AAGNNNNNCTT	4 cut(s)	619, 651, 727, 759
FaqI	GGGAC	1 cut(s)	454
FauNDI	CATATG	2 cut(s)	372, 966
Fnu4HI	GCNGC	2 cut(s)	24, 132
FokI	GGATG	4 cut(s)	359, 442, 466, 1171
FriOI	GRGCYC	3 cut(s)	665, 714, 909
Fsp4HI	GCNGC	2 cut(s)	24, 132
FspBI	CTAG	8 cut(s)	27, 356, 504, 540, 657, 786, 1080, 1109
GluI	GCNGC	2 cut(s)	24, 132
GsaI	CCCAGC	2 cut(s)	294, 998
HaeIII	GGCC	3 cut(s)	526, 719, 882
HgaI	GACGC	1 cut(s)	979
Hin1I	GRCGYC	1 cut(s)	971
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	6 cut(s)	386, 395, 650, 755, 1099, 1124
HphI	GGTGA	3 cut(s)	81, 482, 585
Hpy166II	GTNNAC	3 cut(s)	390, 465, 1157
Hpy188III	TCNNGA	5 cut(s)	330, 356, 773, 1115, 1212
Hpy8I	GTNNAC	3 cut(s)	390, 465, 1157
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	4 cut(s)	275, 456, 645, 1069
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4IV	ACGT	2 cut(s)	95, 467
HpyCH4V	TGCA	8 cut(s)	70, 376, 425, 697, 701, 829, 920, 1011
HpyF10VI	GCNNNNNNNGC	5 cut(s)	556, 970, 1008, 1058, 1149
HpyF3I	CTNAG	4 cut(s)	708, 861, 951, 1176
HpySE526I	ACGT	2 cut(s)	95, 467
Hsp92I	GRCGYC	1 cut(s)	971
Kzo9I	GATC	8 cut(s)	185, 316, 367, 788, 1029, 1091, 1111, 1138
LmnI	GCTCC	6 cut(s)	99, 238, 636, 642, 668, 961
Lsp1109I	GCAGC	2 cut(s)	10, 143
LweI	GCATC	3 cut(s)	79, 337, 1193
MaeI	CTAG	8 cut(s)	27, 356, 504, 540, 657, 786, 1080, 1109
MaeII	ACGT	2 cut(s)	95, 467
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	8 cut(s)	187, 318, 369, 790, 1031, 1093, 1113, 1140
MboI	GATC	8 cut(s)	185, 316, 367, 788, 1029, 1091, 1111, 1138
MboII	GAAGA	7 cut(s)	149, 233, 261, 629, 669, 790, 861
MflI	RGATCY	4 cut(s)	185, 788, 1029, 1111
MhlI	GDGCHC	3 cut(s)	665, 714, 909
MlsI	TGGCCA	2 cut(s)	719, 882
MluCI	AATT	2 cut(s)	197, 576
MluNI	TGGCCA	2 cut(s)	719, 882
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	7 cut(s)	217, 507, 513, 537, 614, 826, 1219
Mox20I	TGGCCA	2 cut(s)	719, 882
Mph1103I	ATGCAT	2 cut(s)	699, 703
MroXI	GAANNNNTTC	1 cut(s)	337
MscI	TGGCCA	2 cut(s)	719, 882
MseI	TTAA	4 cut(s)	195, 554, 768, 857
MslI	CAYNNNNRTG	4 cut(s)	75, 94, 341, 484
Msp20I	TGGCCA	2 cut(s)	719, 882
MspA1I	CMGCKG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	937
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	5 cut(s)	556, 970, 1008, 1058, 1149
NcoI	CCATGG	2 cut(s)	342, 667
NdeI	CATATG	2 cut(s)	372, 966
NdeII	GATC	8 cut(s)	185, 316, 367, 788, 1029, 1091, 1111, 1138
NheI	GCTAGC	1 cut(s)	503
NlaIV	GGNNCC	3 cut(s)	632, 664, 1173
NmuCI	GTSAC	1 cut(s)	488
NsiI	ATGCAT	2 cut(s)	699, 703
NspI	RCATGY	5 cut(s)	213, 257, 701, 837, 933
OliI	CACNNNNGTG	1 cut(s)	94
PaeI	GCATGC	1 cut(s)	701
PaqCI	CACCTGC	1 cut(s)	501
PciI	ACATGT	2 cut(s)	833, 929
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PctI	GAATGC	1 cut(s)	937
PdmI	GAANNNNTTC	1 cut(s)	337
PfeI	GAWTC	5 cut(s)	395, 650, 755, 1099, 1124
PfoI	TCCNGGA	1 cut(s)	580
PkrI	GCNGC	2 cut(s)	25, 133
PleI	GAGTC	1 cut(s)	394
PmaCI	CACGTG	1 cut(s)	96
PmlI	CACGTG	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	394
Ppu21I	YACGTR	1 cut(s)	96
PpuMI	RGGWCCY	1 cut(s)	1172
PscI	ACATGT	2 cut(s)	833, 929
Psp124BI	GAGCTC	2 cut(s)	714, 909
Psp5II	RGGWCCY	1 cut(s)	1172
Psp6I	CCWGG	1 cut(s)	580
PspCI	CACGTG	1 cut(s)	96
PspFI	CCCAGC	2 cut(s)	290, 994
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	3 cut(s)	632, 664, 1173
PspPI	GGNCC	1 cut(s)	1172
PspPPI	RGGWCCY	1 cut(s)	1172
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	4 cut(s)	185, 788, 1029, 1111
PvuII	CAGCTG	1 cut(s)	134
RseI	CAYNNNNRTG	4 cut(s)	75, 94, 341, 484
SacI	GAGCTC	2 cut(s)	714, 909
SaqAI	TTAA	4 cut(s)	195, 554, 768, 857
SatI	GCNGC	2 cut(s)	24, 132
Sau3AI	GATC	8 cut(s)	185, 316, 367, 788, 1029, 1091, 1111, 1138
Sau96I	GGNCC	1 cut(s)	1172
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	3 cut(s)	665, 714, 909
SfaNI	GCATC	3 cut(s)	79, 337, 1193
SinI	GGWCC	1 cut(s)	1172
SmiMI	CAYNNNNRTG	4 cut(s)	75, 94, 341, 484
SphI	GCATGC	1 cut(s)	701
Sse9I	AATT	2 cut(s)	197, 576
SspMI	CTAG	8 cut(s)	27, 356, 504, 540, 657, 786, 1080, 1109
SstI	GAGCTC	2 cut(s)	714, 909
StyD4I	CCNGG	1 cut(s)	580
StyI	CCWWGG	2 cut(s)	342, 667
TaaI	ACNGT	1 cut(s)	406
TaiI	ACGT	2 cut(s)	98, 470
TaqI	TCGA	3 cut(s)	82, 106, 518
TasI	AATT	2 cut(s)	197, 576
TfiI	GAWTC	5 cut(s)	395, 650, 755, 1099, 1124
Tru1I	TTAA	4 cut(s)	195, 554, 768, 857
Tru9I	TTAA	4 cut(s)	195, 554, 768, 857
TscAI	CASTG	3 cut(s)	411, 927, 1159
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	2 cut(s)	23, 131
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	4 cut(s)	429, 444, 627, 663
TspGWI	ACGGA	3 cut(s)	222, 407, 808
TspRI	CASTG	3 cut(s)	411, 927, 1159
VpaK11BI	GGWCC	1 cut(s)	1172
XapI	RAATTY	2 cut(s)	197, 576
XbaI	TCTAGA	1 cut(s)	355
XceI	RCATGY	5 cut(s)	213, 257, 701, 837, 933
XmnI	GAANNNNTTC	1 cut(s)	337
XspI	CTAG	8 cut(s)	27, 356, 504, 540, 657, 786, 1080, 1109
Zsp2I	ATGCAT	2 cut(s)	699, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.