Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003742

Physical Location & Seq

Genomic Coordinates Reverse (-)

6214342 .. 6217566

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g05240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGGTTCTGCTTGTTGTGTTGCTGCTAGAGACAAGACTATAACAAACAGAGCTAGTAGCGAAATTGTACATCGTAATATTAGGTACTCACCAACATGGAGCTTTCGGTGGGATAACCGAGTGGGTGTGGCAGCTGAAGAGACCTCTGTAAGTTGGTTTTCTGATGGTGTTAGCAGAAATGATGGATCGGAAGTTAAATTTGAGTCGGCATGTGTATCTGAGGAGGGAAGTCCATTGGAACATTTTCGAAGACATACAGAGCGAAAATCCTCAATTTCTGAGGGAACTGCCGGGCATGTCAGGACTCCTACTTCAGATCGATCCATTTCAAGAAATATTTCCATGGATGCAACTCTTGAACAGACAAAAGAACCAGCGGAGTCCCCTACTGTTTCATATCCATCCCCGACAAAATTATCAGTTTCGCAGCCTTCTACTTCATCCTTGCCCGCATCCCCTTTGTCATCCCAGAGTCACCTGCCTCCTGCTGGCTCAACGCCAGTGAGGTGGCATCACTGTTCTCCAGGACATCAGCTATTAAGGCAAGTATCTGATGCCCGAGTCCCAGGAATCAAGTCACCAAACAGCTTCTCAATTTCTGAGGAAAAGGCAAAGCTTCCCTCATGGGGCAATGAATCTGCTAGGGGCTCCCGTGGTGGGTCTTCTGATAGTTGGTCTATGAATGCATTTTCCGAGCTCATGGCCACATCTAATAGAGAAAGGAGGTCTTTTGATAGTGAGTCCTTTGGCTTTAATGGTGAGAAGTTAACTAGATCCAGTAGCAGAGTTTCAGCTTCACCTTCTGTTGATTTGCAGACGTGTGGAGTTTGCTCAAAGCTTTTGGCTGAGAAATGTTCATGGAGCAGCCAAAAGATTATTTCAACCAATGAGCTTTCTGTGGTTTCAGTGCTAGTTTGTGGACATGTTTACCATGCTGAGTGTTTGGAGAATCTGACACCTGAAATTAACAAGTATGACCCAGCTTGTCCAGTGTGTACTTTTGGGGAGAAACAGATCCACAAGTTGTCTGAAAAAGCATTGAAAGCTGAAATGGATTTGAAGTCTAGAAACAAGAAATCGAGGAACCGGGTGTTAGATCTTGATGGCGATTCTGCTGTGTTTGATCGCTTGAAAAGCACTGAAAATCAAGGAAAGGTTCCCAAGTTTGGATCCAGTTCCAGCATGAGAAGCACCTTGGGAAAGCCATTTTTGAGACGGCACTTCTCGTTTGGCTCCAGGAGTGCTTCACTATCAGATAATCAATCTACTAGAAAGAAAGGGTTCTTCTGGGCAAAATCCAGCAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

437

Amino Acids

47.83

Weight (kDa)

9.32

Isoelectric Point (pI)

69.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21500 AT2G21500 AT4G39140 AT4G39140 AT4G39140 AT4G39140 AT4G39140
fragaria_vesca	FvH4_2g09590 FvH4_2g09590 FvH4_2g09590
malus_domestica	MD05G1061300.v1.1 MD10G1069100.v1.1
prunus_persica	Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1
pyrus_communis	pycom05g05240 pycom10g05510
rosa_chinensis	RchiOBHm_Chr6g0265921
rosa_laevigata	RLG00000014146
rosa_multiflora	Rmu_co8229217.1_g000001 Rmu_sc0019932.1_g000001
rosa_roxburghii	Rroxscaffold_7G00202200
rosa_rugosa	Rorug06G0021400.1 Rorug06G0021500 Rorug06G0021600.1 Rorug06G0021700
rosa_samantha	Rh6AG142900 Rh6BG143000 Rh6CG139600 Rh6DG127300
rosa_wichuraiana	Rw6G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	486
Acc36I	ACCTGC	1 cut(s)	486
AciI	CCGC	2 cut(s)	377, 450
AclWI	GGATC	6 cut(s)	193, 315, 768, 1009, 1164, 1177
AcoI	YGGCCR	1 cut(s)	702
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	2 cut(s)	156, 297
AfaI	GTAC	3 cut(s)	69, 86, 997
AfiI	CCNNNNNNNGG	4 cut(s)	488, 626, 657, 1166
AflIII	ACRYGT	2 cut(s)	818, 922
AgsI	TTSAA	6 cut(s)	330, 359, 882, 1042, 1060, 1132
AjiI	CACGTC	1 cut(s)	819
AjnI	CCWGG	3 cut(s)	523, 565, 1235
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	3 cut(s)	24, 134, 1207
AlwI	GGATC	6 cut(s)	193, 315, 768, 1009, 1164, 1177
Ama87I	CYCGRG	1 cut(s)	558
AoxI	GGCC	1 cut(s)	702
ApeKI	GCWGC	4 cut(s)	23, 131, 427, 864
ApoI	RAATTY	1 cut(s)	197
Asp700I	GAANNNNTTC	3 cut(s)	243, 337, 1280
AsuC2I	CCSGG	2 cut(s)	292, 1088
AsuHPI	GGTGA	5 cut(s)	81, 467, 570, 770, 789
AsuII	TTCGAA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	558
BalI	TGGCCA	1 cut(s)	704
BamHI	GGATCC	1 cut(s)	1169
BanII	GRGCYC	2 cut(s)	650, 699
BbsI	GAAGAC	2 cut(s)	256, 654
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	4 cut(s)	10, 143, 439, 876
BccI	CCATC	4 cut(s)	158, 176, 409, 1097
BceAI	ACGGC	1 cut(s)	1232
BciT130I	CCWGG	3 cut(s)	525, 567, 1237
BcnI	CCSGG	2 cut(s)	292, 1088
BcoDI	GTCTC	3 cut(s)	24, 134, 1207
BfaI	CTAG	7 cut(s)	27, 54, 642, 771, 911, 1065, 1269
BfuAI	ACCTGC	1 cut(s)	486
BglII	AGATCT	1 cut(s)	1096
BisI	GCNGC	4 cut(s)	24, 132, 428, 865
BlsI	GCNGC	4 cut(s)	25, 133, 429, 866
Bme1390I	CCNGG	5 cut(s)	292, 525, 567, 1088, 1237
BmeT110I	CYCGRG	1 cut(s)	558
BmgBI	CACGTC	1 cut(s)	819
BmiI	GGNNCC	5 cut(s)	649, 1085, 1158, 1171, 1234
BmrFI	CCNGG	5 cut(s)	292, 525, 567, 1088, 1237
BmsI	GCATC	4 cut(s)	337, 461, 520, 544
BpiI	GAAGAC	2 cut(s)	256, 654
BpmI	CTGGAG	2 cut(s)	507, 1219
Bpu14I	TTCGAA	1 cut(s)	247
BpuMI	CCSGG	2 cut(s)	292, 1088
Bsa29I	ATCGAT	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	4 cut(s)	342, 565, 652, 1194
Bsc4I	CCNNNNNNNGG	4 cut(s)	488, 626, 657, 1166
Bse1I	ACTGG	4 cut(s)	500, 777, 989, 1173
Bse3DI	GCAATG	1 cut(s)	637
BseBI	CCWGG	3 cut(s)	525, 567, 1237
BseCI	ATCGAT	1 cut(s)	319
BseDI	CCNNGG	4 cut(s)	342, 565, 652, 1194
BseGI	GGATG	5 cut(s)	352, 401, 440, 452, 464
BseLI	CCNNNNNNNGG	4 cut(s)	488, 626, 657, 1166
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	5 cut(s)	210, 270, 591, 837, 927
BseNI	ACTGG	4 cut(s)	500, 777, 989, 1173
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	4 cut(s)	10, 143, 439, 876
BseYI	CCCAGC	1 cut(s)	979
BshFI	GGCC	1 cut(s)	704
BshVI	ATCGAT	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	699
BsiHKCI	CYCGRG	1 cut(s)	558
BsiSI	CCGG	2 cut(s)	291, 1087
BslFI	GGGAC	2 cut(s)	367, 548
BslI	CCNNNNNNNGG	4 cut(s)	488, 626, 657, 1166
BsmAI	GTCTC	3 cut(s)	24, 134, 1207
BsmBI	CGTCTC	1 cut(s)	1207
BsmFI	GGGAC	2 cut(s)	367, 548
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	1 cut(s)	704
Bso31I	GGTCTC	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	558
Bsp119I	TTCGAA	1 cut(s)	247
Bsp1286I	GDGCHC	2 cut(s)	650, 699
Bsp1407I	TGTACA	1 cut(s)	67
Bsp143I	GATC	8 cut(s)	185, 316, 320, 773, 1014, 1096, 1123, 1169
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	2 cut(s)	377, 450
BspANI	GGCC	1 cut(s)	704
BspCNI	CTCAG	5 cut(s)	211, 271, 592, 838, 928
BspDI	ATCGAT	1 cut(s)	319
BspLI	GGNNCC	5 cut(s)	649, 1085, 1158, 1171, 1234
BspMI	ACCTGC	1 cut(s)	486
BspPI	GGATC	6 cut(s)	193, 315, 768, 1009, 1164, 1177
BspT104I	TTCGAA	1 cut(s)	247
BspTNI	GGTCTC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	637
BsrGI	TGTACA	1 cut(s)	67
BsrI	ACTGG	4 cut(s)	500, 777, 989, 1173
BssECI	CCNNGG	4 cut(s)	342, 565, 652, 1194
BssMI	GATC	8 cut(s)	185, 316, 320, 773, 1014, 1096, 1123, 1169
BssT1I	CCWWGG	2 cut(s)	342, 1194
Bst2UI	CCWGG	3 cut(s)	525, 567, 1237
Bst4CI	ACNGT	2 cut(s)	391, 518
Bst6I	CTCTTC	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	67
BstBI	TTCGAA	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	450, 490
BstDEI	CTNAG	5 cut(s)	219, 279, 600, 846, 936
BstDSI	CCRYGG	2 cut(s)	342, 652
BstF5I	GGATG	5 cut(s)	352, 401, 440, 452, 464
BstKTI	GATC	8 cut(s)	188, 319, 323, 776, 1017, 1099, 1126, 1172
BstMAI	GTCTC	3 cut(s)	24, 134, 1207
BstMBI	GATC	8 cut(s)	185, 316, 320, 773, 1014, 1096, 1123, 1169
BstMWI	GCNNNNNNNGC	4 cut(s)	541, 1043, 1134, 1188
BstNI	CCWGG	3 cut(s)	525, 567, 1237
BstNSI	RCATGY	3 cut(s)	213, 299, 926
BstSCI	CCNGG	5 cut(s)	290, 523, 565, 1086, 1235
BstV1I	GCAGC	4 cut(s)	10, 143, 439, 876
BstV2I	GAAGAC	2 cut(s)	256, 654
BstX2I	RGATCY	4 cut(s)	773, 1014, 1096, 1169
BstXI	CCANNNNNNTGG	1 cut(s)	507
BstYI	RGATCY	4 cut(s)	773, 1014, 1096, 1169
Bsu15I	ATCGAT	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	704
BsuTUI	ATCGAT	1 cut(s)	319
BtgI	CCRYGG	2 cut(s)	342, 652
BtrI	CACGTC	1 cut(s)	819
BtsCI	GGATG	5 cut(s)	352, 401, 440, 452, 464
BtsIMutI	CAGTG	5 cut(s)	507, 514, 912, 996, 1137
BveI	ACCTGC	1 cut(s)	486
Cac8I	GCNNGC	2 cut(s)	450, 490
ClaI	ATCGAT	1 cut(s)	319
Csp6I	GTAC	3 cut(s)	68, 85, 996
CviQI	GTAC	3 cut(s)	68, 85, 996
DdeI	CTNAG	5 cut(s)	219, 279, 600, 846, 936
DpnI	GATC	8 cut(s)	187, 318, 322, 775, 1016, 1098, 1125, 1171
DpnII	GATC	8 cut(s)	185, 316, 320, 773, 1014, 1096, 1123, 1169
EaeI	YGGCCR	1 cut(s)	702
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	697
Eco130I	CCWWGG	2 cut(s)	342, 1194
Eco24I	GRGCYC	2 cut(s)	650, 699
Eco31I	GGTCTC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	2 cut(s)	156, 297
Eco88I	CYCGRG	1 cut(s)	558
EcoICRI	GAGCTC	1 cut(s)	697
EcoRII	CCWGG	3 cut(s)	523, 565, 1235
EcoT14I	CCWWGG	2 cut(s)	342, 1194
EcoT22I	ATGCAT	1 cut(s)	688
EcoT38I	GRGCYC	2 cut(s)	650, 699
ErhI	CCWWGG	2 cut(s)	342, 1194
Esp3I	CGTCTC	1 cut(s)	1207
FalI	AAGNNNNNCTT	2 cut(s)	712, 744
FaqI	GGGAC	2 cut(s)	367, 548
FauI	CCCGC	1 cut(s)	457
Fnu4HI	GCNGC	4 cut(s)	24, 132, 428, 865
FokI	GGATG	5 cut(s)	359, 388, 427, 439, 451
FriOI	GRGCYC	2 cut(s)	650, 699
Fsp4HI	GCNGC	4 cut(s)	24, 132, 428, 865
FspBI	CTAG	7 cut(s)	27, 54, 642, 771, 911, 1065, 1269
GluI	GCNGC	4 cut(s)	24, 132, 428, 865
GsaI	CCCAGC	1 cut(s)	983
GsuI	CTGGAG	2 cut(s)	507, 1219
HaeIII	GGCC	1 cut(s)	704
HapII	CCGG	2 cut(s)	291, 1087
HincII	GTYRAC	1 cut(s)	768
HindII	GTYRAC	1 cut(s)	768
HindIII	AAGCTT	2 cut(s)	614, 836
HpaI	GTTAAC	1 cut(s)	768
HpaII	CCGG	2 cut(s)	291, 1087
HphI	GGTGA	5 cut(s)	81, 467, 570, 770, 789
Hpy166II	GTNNAC	4 cut(s)	768, 920, 928, 996
Hpy188III	TCNNGA	5 cut(s)	301, 330, 356, 1065, 1100
Hpy8I	GTNNAC	4 cut(s)	768, 920, 928, 996
HpyAV	CCTTC	2 cut(s)	441, 810
HpyCH4III	ACNGT	2 cut(s)	391, 518
HpyCH4IV	ACGT	1 cut(s)	818
HpyCH4V	TGCA	3 cut(s)	350, 686, 814
HpyF10VI	GCNNNNNNNGC	4 cut(s)	541, 1043, 1134, 1188
HpyF3I	CTNAG	5 cut(s)	219, 279, 600, 846, 936
HpySE526I	ACGT	1 cut(s)	818
KspAI	GTTAAC	1 cut(s)	768
Kzo9I	GATC	8 cut(s)	185, 316, 320, 773, 1014, 1096, 1123, 1169
LmnI	GCTCC	4 cut(s)	99, 653, 861, 1238
Lsp1109I	GCAGC	4 cut(s)	10, 143, 439, 876
LweI	GCATC	4 cut(s)	337, 461, 520, 544
MaeI	CTAG	7 cut(s)	27, 54, 642, 771, 911, 1065, 1269
MaeII	ACGT	1 cut(s)	818
MaeIII	GTNAC	2 cut(s)	473, 576
MalI	GATC	8 cut(s)	187, 318, 322, 775, 1016, 1098, 1125, 1171
MboI	GATC	8 cut(s)	185, 316, 320, 773, 1014, 1096, 1123, 1169
MboII	GAAGA	4 cut(s)	149, 261, 654, 1276
MflI	RGATCY	4 cut(s)	773, 1014, 1096, 1169
MhlI	GDGCHC	2 cut(s)	650, 699
MlsI	TGGCCA	1 cut(s)	704
MluCI	AATT	6 cut(s)	63, 197, 273, 413, 594, 963
MluNI	TGGCCA	1 cut(s)	704
MlyI	GAGTC	6 cut(s)	212, 298, 389, 481, 570, 749
Mox20I	TGGCCA	1 cut(s)	704
Mph1103I	ATGCAT	1 cut(s)	688
MroXI	GAANNNNTTC	3 cut(s)	243, 337, 1280
MscI	TGGCCA	1 cut(s)	704
MseI	TTAA	5 cut(s)	195, 539, 753, 767, 966
MslI	CAYNNNNRTG	1 cut(s)	94
Msp20I	TGGCCA	1 cut(s)	704
MspA1I	CMGCKG	2 cut(s)	134, 377
MspI	CCGG	2 cut(s)	291, 1087
MspR9I	CCNGG	5 cut(s)	292, 525, 567, 1088, 1237
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	3 cut(s)	525, 567, 1237
MwoI	GCNNNNNNNGC	4 cut(s)	541, 1043, 1134, 1188
NciI	CCSGG	2 cut(s)	292, 1088
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	8 cut(s)	185, 316, 320, 773, 1014, 1096, 1123, 1169
NlaIV	GGNNCC	5 cut(s)	649, 1085, 1158, 1171, 1234
NmuCI	GTSAC	2 cut(s)	473, 576
NsiI	ATGCAT	1 cut(s)	688
NspI	RCATGY	3 cut(s)	213, 299, 926
NspV	TTCGAA	1 cut(s)	247
PaqCI	CACCTGC	1 cut(s)	486
PciI	ACATGT	1 cut(s)	922
PctI	GAATGC	1 cut(s)	688
PdmI	GAANNNNTTC	3 cut(s)	243, 337, 1280
PfeI	GAWTC	4 cut(s)	570, 635, 949, 1109
PfoI	TCCNGGA	2 cut(s)	523, 1235
PkrI	GCNGC	4 cut(s)	25, 133, 429, 866
PleI	GAGTC	6 cut(s)	211, 298, 388, 480, 569, 748
PpsI	GAGTC	6 cut(s)	211, 298, 388, 480, 569, 748
PscI	ACATGT	1 cut(s)	922
Psp124BI	GAGCTC	1 cut(s)	699
Psp6I	CCWGG	3 cut(s)	523, 565, 1235
PspFI	CCCAGC	1 cut(s)	979
PspGI	CCWGG	3 cut(s)	523, 565, 1235
PspN4I	GGNNCC	5 cut(s)	649, 1085, 1158, 1171, 1234
PsuI	RGATCY	4 cut(s)	773, 1014, 1096, 1169
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	3 cut(s)	69, 86, 997
RsaNI	GTAC	3 cut(s)	68, 85, 996
RseI	CAYNNNNRTG	1 cut(s)	94
SacI	GAGCTC	1 cut(s)	699
SaqAI	TTAA	5 cut(s)	195, 539, 753, 767, 966
SatI	GCNGC	4 cut(s)	24, 132, 428, 865
Sau3AI	GATC	8 cut(s)	185, 316, 320, 773, 1014, 1096, 1123, 1169
SchI	GAGTC	6 cut(s)	212, 298, 389, 481, 570, 749
ScrFI	CCNGG	5 cut(s)	292, 525, 567, 1088, 1237
SduI	GDGCHC	2 cut(s)	650, 699
SfaNI	GCATC	4 cut(s)	337, 461, 520, 544
SfuI	TTCGAA	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	94
Sse9I	AATT	6 cut(s)	63, 197, 273, 413, 594, 963
SsiI	CCGC	2 cut(s)	377, 450
SspI	AATATT	2 cut(s)	79, 337
SspMI	CTAG	7 cut(s)	27, 54, 642, 771, 911, 1065, 1269
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	5 cut(s)	290, 523, 565, 1086, 1235
StyI	CCWWGG	2 cut(s)	342, 1194
TaaI	ACNGT	2 cut(s)	391, 518
TaiI	ACGT	1 cut(s)	821
TaqI	TCGA	3 cut(s)	247, 319, 1079
TasI	AATT	6 cut(s)	63, 197, 273, 413, 594, 963
TatI	WGTACW	2 cut(s)	67, 995
TfiI	GAWTC	4 cut(s)	570, 635, 949, 1109
Tru1I	TTAA	5 cut(s)	195, 539, 753, 767, 966
Tru9I	TTAA	5 cut(s)	195, 539, 753, 767, 966
TscAI	CASTG	5 cut(s)	507, 521, 912, 996, 1144
TseFI	GTSAC	2 cut(s)	473, 576
TseI	GCWGC	4 cut(s)	23, 131, 427, 864
Tsp45I	GTSAC	2 cut(s)	473, 576
TspDTI	ATGAA	5 cut(s)	384, 429, 648, 695, 846
TspRI	CASTG	5 cut(s)	507, 521, 912, 996, 1144
XapI	RAATTY	1 cut(s)	197
XbaI	TCTAGA	1 cut(s)	1064
XceI	RCATGY	3 cut(s)	213, 299, 926
XmnI	GAANNNNTTC	3 cut(s)	243, 337, 1280
XspI	CTAG	7 cut(s)	27, 54, 642, 771, 911, 1065, 1269
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.