Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003742

Physical Location & Seq

Genomic Coordinates Forward (+)

18054183 .. 18061899

Gene Structure 7717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG139600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTCTATGGCAGATCAATCTATTTCAAGAAACATTTCCATGGATGCCAGTCTAGAACAGACAAAGGAGTCAACGGAATCCTCAACAGTGTCATACCCGTCTCCTGCAAAGCTATCAGTTTCATTGCCTTCTACTTCATCCTTGTCCGCGTCCCCGTTGTCATCCCAATATCACCTGCCTCCTGCTAGCTCAACCCCGTCGAGGTGGCCTCGCTGTTCTCCTAGACATCAGCTATTAAGGCAAGCATCTGACAGCCGAATTCCAGGAAACAAATCACCAAGCTACCTCTCAATATCTGAAGATAGGGCAAGGCTCCCTTCATGGAGCAATGAATCTGCTAGGGGCTCCCGTGGTGGGTCTTCAGATAGTTGGTCTATGCATGCATTTTCTGAGCTCATGGCCACATCTAATAGAGAAAGGTGGTCTTTTGATAGTGAATCCTTTGGCTTTAATCGTGAGAAGATAACTAGATCCAATAGCAGAATATCAGCTTCCCCCTCCATGGATTTGCAGACATGTGGGATTTGCTCAAAGCTATTAACTGAGAAATCTTCGTGGAGTGGCCAAAAGTTTATTGCGAACAATGAGCTCTCTGTGGTTGCAGTGCTAACATGTGGGCATTCTTATCACGCTGAGTGTTTGGAGCATATGACGCCTGATATCAACAAGTATGACCCAGCTTGCCCTGTTTGCACCTTTGGAGAGAAACAGATCCATAAGTTGTCCGAAAAGGCATTGAAAGCTGAAATGGATTTGAAGGCTAGAAATAGGAGATCAAGGAATCGGGTGCTAGATCTTGATAGTGATTCTGCTGTGTTTGATCGCTTGAAAGGCAGTGGACATCAAGGAAAGGGTCCTAAGATGGCATCCAGTTCCAGCATGAGAAACTCCTCGGGAAAGCCTTTTTTGAGACGGCTCTCATTTGGCTCCAAGAGTGCTCGAGCCCTGTCGGAGAATCATTCTACCAGAAAGAAGGGGTTCTTCTGGGCAAAATCTAGCAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

335

Amino Acids

36.95

Weight (kDa)

9.76

Isoelectric Point (pI)

72.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21500 AT2G21500 AT4G39140 AT4G39140 AT4G39140 AT4G39140 AT4G39140
fragaria_vesca	FvH4_2g09590 FvH4_2g09590 FvH4_2g09590
malus_domestica	MD05G1061300.v1.1 MD10G1069100.v1.1
prunus_persica	Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1
pyrus_communis	pycom05g05240 pycom10g05510
rosa_chinensis	RchiOBHm_Chr6g0265921
rosa_laevigata	RLG00000014146
rosa_multiflora	Rmu_co8229217.1_g000001 Rmu_sc0019932.1_g000001
rosa_roxburghii	Rroxscaffold_7G00202200
rosa_rugosa	Rorug06G0021400.1 Rorug06G0021500 Rorug06G0021600.1 Rorug06G0021700
rosa_samantha	Rh6AG142900 Rh6BG143000 Rh6CG139600 Rh6DG127300
rosa_wichuraiana	Rw6G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	183
AasI	GACNNNNNNGTC	1 cut(s)	67
Acc36I	ACCTGC	1 cut(s)	183
AccII	CGCG	1 cut(s)	149
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	2 cut(s)	465, 706
AcoI	YGGCCR	2 cut(s)	399, 562
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	2 cut(s)	318, 345
AcyI	GRCGYC	1 cut(s)	653
AfiI	CCNNNNNNNGG	3 cut(s)	201, 354, 502
AflIII	ACRYGT	2 cut(s)	515, 611
AgsI	TTSAA	4 cut(s)	27, 739, 757, 829
AjnI	CCWGG	1 cut(s)	262
Alw21I	GWGCWC	3 cut(s)	396, 591, 940
Alw26I	GTCTC	2 cut(s)	105, 904
AlwI	GGATC	2 cut(s)	465, 706
Ama87I	CYCGRG	2 cut(s)	892, 939
AoxI	GGCC	3 cut(s)	206, 399, 562
ApoI	RAATTY	1 cut(s)	258
Asp700I	GAANNNNTTC	2 cut(s)	34, 977
AspS9I	GGNCC	1 cut(s)	854
AsuHPI	GGTGA	2 cut(s)	164, 267
AsuNHI	GCTAGC	1 cut(s)	185
AvaI	CYCGRG	2 cut(s)	892, 939
AvaII	GGWCC	1 cut(s)	854
BalI	TGGCCA	2 cut(s)	401, 564
BanII	GRGCYC	4 cut(s)	347, 396, 591, 946
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	3 cut(s)	396, 591, 940
BccI	CCATC	1 cut(s)	856
BceAI	ACGGC	1 cut(s)	929
BciT130I	CCWGG	1 cut(s)	264
BcoDI	GTCTC	2 cut(s)	105, 904
BfaI	CTAG	8 cut(s)	53, 186, 222, 339, 468, 762, 791, 996
BfuAI	ACCTGC	1 cut(s)	183
BglII	AGATCT	1 cut(s)	793
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	854
BmeT110I	CYCGRG	2 cut(s)	892, 939
BmgT120I	GGNCC	1 cut(s)	854
BmiI	GGNNCC	4 cut(s)	314, 346, 855, 928
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	3 cut(s)	34, 254, 875
BmtI	GCTAGC	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BsaHI	GRCGYC	1 cut(s)	653
BsaJI	CCNNGG	4 cut(s)	39, 349, 501, 891
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 354, 502
Bse1I	ACTGG	2 cut(s)	48, 870
Bse3DI	GCAATG	2 cut(s)	122, 334
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	4 cut(s)	39, 349, 501, 891
BseGI	GGATG	4 cut(s)	49, 137, 161, 866
BseLI	CCNNNNNNNGG	3 cut(s)	201, 354, 502
BseMI	GCAATG	2 cut(s)	122, 334
BseMII	CTCAG	3 cut(s)	381, 534, 624
BseNI	ACTGG	2 cut(s)	48, 870
BseRI	GAGGAG	1 cut(s)	880
BseYI	CCCAGC	1 cut(s)	676
Bsh1236I	CGCG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	208, 401, 564
BsiHKAI	GWGCWC	3 cut(s)	396, 591, 940
BsiHKCI	CYCGRG	2 cut(s)	892, 939
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	3 cut(s)	201, 354, 502
BsmAI	GTCTC	2 cut(s)	105, 904
BsmBI	CGTCTC	2 cut(s)	105, 904
BsmFI	GGGAC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	3 cut(s)	208, 401, 564
BsoBI	CYCGRG	2 cut(s)	892, 939
Bsp1286I	GDGCHC	5 cut(s)	347, 396, 591, 940, 946
Bsp143I	GATC	6 cut(s)	13, 470, 711, 773, 793, 820
Bsp19I	CCATGG	2 cut(s)	39, 501
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	3 cut(s)	208, 401, 564
BspCNI	CTCAG	3 cut(s)	382, 535, 625
BspFNI	CGCG	1 cut(s)	149
BspLI	GGNNCC	4 cut(s)	314, 346, 855, 928
BspMI	ACCTGC	1 cut(s)	183
BspOI	GCTAGC	1 cut(s)	189
BspPI	GGATC	2 cut(s)	465, 706
BsrDI	GCAATG	2 cut(s)	122, 334
BsrI	ACTGG	2 cut(s)	48, 870
BssECI	CCNNGG	4 cut(s)	39, 349, 501, 891
BssMI	GATC	6 cut(s)	13, 470, 711, 773, 793, 820
BssNI	GRCGYC	1 cut(s)	653
BssT1I	CCWWGG	2 cut(s)	39, 501
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	653
BstC8I	GCNNGC	4 cut(s)	187, 243, 381, 682
BstDEI	CTNAG	4 cut(s)	390, 543, 633, 858
BstDSI	CCRYGG	3 cut(s)	39, 349, 501
BstF5I	GGATG	4 cut(s)	49, 137, 161, 866
BstFNI	CGCG	1 cut(s)	149
BstKTI	GATC	6 cut(s)	16, 473, 714, 776, 796, 823
BstMAI	GTCTC	2 cut(s)	105, 904
BstMBI	GATC	6 cut(s)	13, 470, 711, 773, 793, 820
BstMWI	GCNNNNNNNGC	5 cut(s)	238, 652, 690, 740, 831
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	3 cut(s)	383, 519, 615
BstSCI	CCNGG	1 cut(s)	262
BstUI	CGCG	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	3 cut(s)	470, 711, 793
BstYI	RGATCY	3 cut(s)	470, 711, 793
BsuRI	GGCC	3 cut(s)	208, 401, 564
BtgI	CCRYGG	3 cut(s)	39, 349, 501
BtsCI	GGATG	4 cut(s)	49, 137, 161, 866
BtsI	GCAGTG	2 cut(s)	609, 841
BtsIMutI	CAGTG	3 cut(s)	93, 609, 841
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	4 cut(s)	187, 243, 381, 682
Cfr13I	GGNCC	1 cut(s)	854
CseI	GACGC	2 cut(s)	138, 661
CviAII	CATG	8 cut(s)	40, 321, 380, 397, 502, 516, 612, 880
DdeI	CTNAG	4 cut(s)	390, 543, 633, 858
DpnI	GATC	6 cut(s)	15, 472, 713, 775, 795, 822
DpnII	GATC	6 cut(s)	13, 470, 711, 773, 793, 820
DrdI	GACNNNNNNGTC	1 cut(s)	67
DseDI	GACNNNNNNGTC	1 cut(s)	67
EaeI	YGGCCR	2 cut(s)	399, 562
Ecl136II	GAGCTC	2 cut(s)	394, 589
Eco130I	CCWWGG	2 cut(s)	39, 501
Eco24I	GRGCYC	4 cut(s)	347, 396, 591, 946
Eco32I	GATATC	1 cut(s)	661
Eco47I	GGWCC	1 cut(s)	854
Eco53kI	GAGCTC	2 cut(s)	394, 589
Eco57I	CTGAAG	2 cut(s)	318, 345
Eco88I	CYCGRG	2 cut(s)	892, 939
EcoICRI	GAGCTC	2 cut(s)	394, 589
EcoO109I	RGGNCCY	1 cut(s)	854
EcoRI	GAATTC	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	661
EcoT14I	CCWWGG	2 cut(s)	39, 501
EcoT22I	ATGCAT	2 cut(s)	381, 385
EcoT38I	GRGCYC	4 cut(s)	347, 396, 591, 946
ErhI	CCWWGG	2 cut(s)	39, 501
Esp3I	CGTCTC	2 cut(s)	105, 904
FaeI	CATG	8 cut(s)	43, 324, 383, 400, 505, 519, 615, 883
FalI	AAGNNNNNCTT	6 cut(s)	301, 333, 409, 441, 965, 997
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	8 cut(s)	39, 320, 379, 396, 501, 515, 611, 879
FauNDI	CATATG	1 cut(s)	648
FokI	GGATG	4 cut(s)	56, 124, 148, 853
FriOI	GRGCYC	4 cut(s)	347, 396, 591, 946
FspBI	CTAG	8 cut(s)	53, 186, 222, 339, 468, 762, 791, 996
GsaI	CCCAGC	1 cut(s)	680
HaeIII	GGCC	3 cut(s)	208, 401, 564
HgaI	GACGC	2 cut(s)	138, 661
Hin1I	GRCGYC	1 cut(s)	653
Hin1II	CATG	8 cut(s)	43, 324, 383, 400, 505, 519, 615, 883
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	7 cut(s)	68, 77, 332, 437, 781, 806, 955
HphI	GGTGA	2 cut(s)	164, 267
Hpy166II	GTNNAC	2 cut(s)	72, 839
Hpy188I	TCNGA	6 cut(s)	250, 298, 364, 391, 727, 952
Hpy188III	TCNNGA	5 cut(s)	27, 53, 455, 797, 894
Hpy8I	GTNNAC	2 cut(s)	72, 839
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	4 cut(s)	138, 327, 751, 967
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	6 cut(s)	107, 379, 383, 511, 602, 693
HpyF10VI	GCNNNNNNNGC	5 cut(s)	238, 652, 690, 740, 831
HpyF3I	CTNAG	4 cut(s)	390, 543, 633, 858
Hsp92I	GRCGYC	1 cut(s)	653
Hsp92II	CATG	8 cut(s)	43, 324, 383, 400, 505, 519, 615, 883
Kzo9I	GATC	6 cut(s)	13, 470, 711, 773, 793, 820
LmnI	GCTCC	5 cut(s)	318, 324, 350, 643, 932
LweI	GCATC	3 cut(s)	34, 254, 875
MaeI	CTAG	8 cut(s)	53, 186, 222, 339, 468, 762, 791, 996
MalI	GATC	6 cut(s)	15, 472, 713, 775, 795, 822
MboI	GATC	6 cut(s)	13, 470, 711, 773, 793, 820
MboII	GAAGA	5 cut(s)	311, 351, 472, 543, 973
MflI	RGATCY	3 cut(s)	470, 711, 793
MhlI	GDGCHC	5 cut(s)	347, 396, 591, 940, 946
MlsI	TGGCCA	2 cut(s)	401, 564
MluCI	AATT	1 cut(s)	258
MluNI	TGGCCA	2 cut(s)	401, 564
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	930
MnlI	CCTC	7 cut(s)	91, 189, 195, 219, 296, 508, 901
Mox20I	TGGCCA	2 cut(s)	401, 564
Mph1103I	ATGCAT	2 cut(s)	381, 385
MroXI	GAANNNNTTC	2 cut(s)	34, 977
MscI	TGGCCA	2 cut(s)	401, 564
MseI	TTAA	3 cut(s)	236, 450, 539
MslI	CAYNNNNRTG	1 cut(s)	38
Msp20I	TGGCCA	2 cut(s)	401, 564
MspR9I	CCNGG	1 cut(s)	264
Mva1269I	GAATGC	1 cut(s)	619
MvaI	CCWGG	1 cut(s)	264
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	5 cut(s)	238, 652, 690, 740, 831
NcoI	CCATGG	2 cut(s)	39, 501
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	6 cut(s)	13, 470, 711, 773, 793, 820
NheI	GCTAGC	1 cut(s)	185
NlaIII	CATG	8 cut(s)	43, 324, 383, 400, 505, 519, 615, 883
NlaIV	GGNNCC	4 cut(s)	314, 346, 855, 928
NsiI	ATGCAT	2 cut(s)	381, 385
NspI	RCATGY	3 cut(s)	383, 519, 615
PaeI	GCATGC	1 cut(s)	383
PaeR7I	CTCGAG	1 cut(s)	939
PaqCI	CACCTGC	1 cut(s)	183
PciI	ACATGT	2 cut(s)	515, 611
PctI	GAATGC	1 cut(s)	619
PdmI	GAANNNNTTC	2 cut(s)	34, 977
PfeI	GAWTC	6 cut(s)	77, 332, 437, 781, 806, 955
PfoI	TCCNGGA	1 cut(s)	262
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	854
PscI	ACATGT	2 cut(s)	515, 611
Psp124BI	GAGCTC	2 cut(s)	396, 591
Psp5II	RGGWCCY	1 cut(s)	854
Psp6I	CCWGG	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	4 cut(s)	314, 346, 855, 928
PspPI	GGNCC	1 cut(s)	854
PspPPI	RGGWCCY	1 cut(s)	854
PspXI	VCTCGAGB	1 cut(s)	939
PsuI	RGATCY	3 cut(s)	470, 711, 793
RseI	CAYNNNNRTG	1 cut(s)	38
SacI	GAGCTC	2 cut(s)	396, 591
SaqAI	TTAA	3 cut(s)	236, 450, 539
Sau3AI	GATC	6 cut(s)	13, 470, 711, 773, 793, 820
Sau96I	GGNCC	1 cut(s)	854
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	5 cut(s)	347, 396, 591, 940, 946
SfaNI	GCATC	3 cut(s)	34, 254, 875
Sfr274I	CTCGAG	1 cut(s)	939
SinI	GGWCC	1 cut(s)	854
SlaI	CTCGAG	1 cut(s)	939
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	939
SmoI	CTYRAG	1 cut(s)	939
SphI	GCATGC	1 cut(s)	383
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	8 cut(s)	53, 186, 222, 339, 468, 762, 791, 996
SstI	GAGCTC	2 cut(s)	396, 591
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	2 cut(s)	39, 501
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	200, 940
TasI	AATT	1 cut(s)	258
TfiI	GAWTC	6 cut(s)	77, 332, 437, 781, 806, 955
Tru1I	TTAA	3 cut(s)	236, 450, 539
Tru9I	TTAA	3 cut(s)	236, 450, 539
TscAI	CASTG	3 cut(s)	93, 609, 841
TspDTI	ATGAA	4 cut(s)	111, 126, 309, 345
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	3 cut(s)	93, 609, 841
VpaK11BI	GGWCC	1 cut(s)	854
XapI	RAATTY	1 cut(s)	258
XbaI	TCTAGA	1 cut(s)	52
XceI	RCATGY	3 cut(s)	383, 519, 615
XhoI	CTCGAG	1 cut(s)	939
XmnI	GAANNNNTTC	2 cut(s)	34, 977
XspI	CTAG	8 cut(s)	53, 186, 222, 339, 468, 762, 791, 996
Zsp2I	ATGCAT	2 cut(s)	381, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.