Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003742

Physical Location & Seq

Genomic Coordinates Reverse (-)

2711230 .. 2711834

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0021500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTACAAAAGAAGTGAAACGTCTGGTTCTAGGGGTATAGCTAATCGGCATGCCCATCATGCCCTCAAACTTCTTGTTCAAAAGCATCAACCTTCCCTGGTTTCTCTTAGTGAAACGCACTGCCCCAAGAAGCTTCAAAGGTCGCTACCCCGAGAGATTGGCCTCCTTCATATTGCGCATTTTGATCAGATTGAGCGCACCGACGGTGTTGCATTGCTGTGGGACGACTTGGCCTCTATCCAGGTACGCGACGTCAACTACTTTTTCTTTGACGTCGTCGTGCCAAGCCTAGAGAAAGGGGAATGGCTTTTCACGGGATTTTATGGGCATTCTGATACCAGTCAGAGGCATAAGTCATGGGATTTACTTAGGTCCTTATTCAGCAGTCCGGTGGAGAAGTGGGTGTTGTCGGTGATTTTAACGAAATTTTGTCCTGGTTTAAGAAGTCCAGCTGTAGGCTTCTTGACTAAGCTCAGATGCAGGCATTCCAGCAGGCTATATCAGATTGTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

171

Amino Acids

19.66

Weight (kDa)

9.67

Isoelectric Point (pI)

58.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21500 AT2G21500 AT4G39140 AT4G39140 AT4G39140 AT4G39140 AT4G39140
fragaria_vesca	FvH4_2g09590 FvH4_2g09590 FvH4_2g09590
malus_domestica	MD05G1061300.v1.1 MD10G1069100.v1.1
prunus_persica	Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1 Prupe.8G091100_v2.0.a1
pyrus_communis	pycom05g05240 pycom10g05510
rosa_chinensis	RchiOBHm_Chr6g0265921
rosa_laevigata	RLG00000014146
rosa_multiflora	Rmu_co8229217.1_g000001 Rmu_sc0019932.1_g000001
rosa_roxburghii	Rroxscaffold_7G00202200
rosa_rugosa	Rorug06G0021400.1 Rorug06G0021500 Rorug06G0021600.1 Rorug06G0021700
rosa_samantha	Rh6AG142900 Rh6BG143000 Rh6CG139600 Rh6DG127300
rosa_wichuraiana	Rw6G012350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	255, 276
Acc16I	TGCGCA	1 cut(s)	177
AccII	CGCG	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	425
AcyI	GRCGYC	2 cut(s)	252, 273
AfaI	GTAC	2 cut(s)	5, 246
AfiI	CCNNNNNNNGG	2 cut(s)	345, 455
AgsI	TTSAA	2 cut(s)	80, 137
AjnI	CCWGG	3 cut(s)	96, 240, 433
AluBI	AGCT	4 cut(s)	41, 133, 452, 472
AluI	AGCT	4 cut(s)	41, 133, 452, 472
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	2 cut(s)	160, 231
ApoI	RAATTY	1 cut(s)	425
AspLEI	GCGC	2 cut(s)	178, 198
AspS9I	GGNCC	1 cut(s)	372
AsuHPI	GGTGA	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	372
BccI	CCATC	1 cut(s)	63
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	3 cut(s)	98, 242, 435
BclI	TGATCA	1 cut(s)	184
BfaI	CTAG	2 cut(s)	30, 290
BfmI	CTRYAG	1 cut(s)	453
Bme1390I	CCNGG	3 cut(s)	98, 242, 435
Bme18I	GGWCC	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	372
BmrFI	CCNGG	3 cut(s)	98, 242, 435
BmsI	GCATC	2 cut(s)	94, 467
BsaHI	GRCGYC	2 cut(s)	252, 273
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 455
Bse1I	ACTGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	212
BseBI	CCWGG	3 cut(s)	98, 242, 435
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	345, 455
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	487
BseNI	ACTGG	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	162, 233
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	345, 455
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	2 cut(s)	328, 484
BsnI	GGCC	2 cut(s)	162, 233
BsoBI	CYCGRG	1 cut(s)	150
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	184
BspANI	GGCC	2 cut(s)	162, 233
BspCNI	CTCAG	1 cut(s)	486
BspFNI	CGCG	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	212
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	184
BssNI	GRCGYC	2 cut(s)	252, 273
Bst2UI	CCWGG	3 cut(s)	98, 242, 435
Bst4CI	ACNGT	1 cut(s)	206
BstACI	GRCGYC	2 cut(s)	252, 273
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	3 cut(s)	51, 482, 494
BstDEI	CTNAG	4 cut(s)	107, 368, 468, 473
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	178, 198
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	3 cut(s)	98, 242, 435
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	3 cut(s)	96, 240, 433
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	1 cut(s)	249
BsuRI	GGCC	2 cut(s)	162, 233
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	3 cut(s)	51, 482, 494
CfoI	GCGC	2 cut(s)	178, 198
Cfr13I	GGNCC	1 cut(s)	372
Csp6I	GTAC	2 cut(s)	4, 245
CviAII	CATG	3 cut(s)	50, 59, 357
CviQI	GTAC	2 cut(s)	4, 245
DdeI	CTNAG	4 cut(s)	107, 368, 468, 473
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRII	CCWGG	3 cut(s)	96, 240, 433
FaeI	CATG	3 cut(s)	53, 62, 360
FaiI	YATR	8 cut(s)	38, 51, 60, 171, 324, 351, 358, 499
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	3 cut(s)	49, 58, 356
FbaI	TGATCA	1 cut(s)	184
FspBI	CTAG	2 cut(s)	30, 290
FspI	TGCGCA	1 cut(s)	177
GlaI	GCGC	2 cut(s)	177, 197
HaeIII	GGCC	2 cut(s)	162, 233
HapII	CCGG	1 cut(s)	389
HhaI	GCGC	2 cut(s)	178, 198
Hin1I	GRCGYC	2 cut(s)	252, 273
Hin1II	CATG	3 cut(s)	53, 62, 360
Hin6I	GCGC	2 cut(s)	176, 196
HinP1I	GCGC	2 cut(s)	176, 196
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	131
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	5 cut(s)	189, 334, 345, 476, 504
Hpy188III	TCNNGA	1 cut(s)	463
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	4 cut(s)	206, 254, 278, 281
HpyAV	CCTTC	2 cut(s)	102, 176
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	3 cut(s)	20, 252, 273
HpyCH4V	TGCA	2 cut(s)	212, 480
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	4 cut(s)	107, 368, 468, 473
HpySE526I	ACGT	3 cut(s)	20, 252, 273
Hsp92I	GRCGYC	2 cut(s)	252, 273
Hsp92II	CATG	3 cut(s)	53, 62, 360
HspAI	GCGC	2 cut(s)	176, 196
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	184
LweI	GCATC	2 cut(s)	94, 467
MaeI	CTAG	2 cut(s)	30, 290
MaeII	ACGT	3 cut(s)	20, 252, 273
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MluCI	AATT	2 cut(s)	425, 510
MnlI	CCTC	4 cut(s)	74, 173, 244, 339
MseI	TTAA	2 cut(s)	419, 440
MslI	CAYNNNNRTG	1 cut(s)	217
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	3 cut(s)	98, 242, 435
Mva1269I	GAATGC	2 cut(s)	328, 484
MvaI	CCWGG	3 cut(s)	98, 242, 435
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	3 cut(s)	53, 62, 360
NsbI	TGCGCA	1 cut(s)	177
NspI	RCATGY	1 cut(s)	53
PaeI	GCATGC	1 cut(s)	53
PctI	GAATGC	2 cut(s)	328, 484
PflFI	GACNNNGTC	1 cut(s)	275
PpuMI	RGGWCCY	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	3 cut(s)	96, 240, 433
PspGI	CCWGG	3 cut(s)	96, 240, 433
PspPI	GGNCC	1 cut(s)	372
PspPPI	RGGWCCY	1 cut(s)	372
PsyI	GACNNNGTC	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	2 cut(s)	5, 246
RsaNI	GTAC	2 cut(s)	4, 245
RseI	CAYNNNNRTG	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	419, 440
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	372
ScrFI	CCNGG	3 cut(s)	98, 242, 435
SfaNI	GCATC	2 cut(s)	94, 467
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	372
SmiMI	CAYNNNNRTG	1 cut(s)	217
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	2 cut(s)	425, 510
SspMI	CTAG	2 cut(s)	30, 290
StyD4I	CCNGG	3 cut(s)	96, 240, 433
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	3 cut(s)	23, 255, 276
TasI	AATT	2 cut(s)	425, 510
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	2 cut(s)	419, 440
Tru9I	TTAA	2 cut(s)	419, 440
TscAI	CASTG	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	125
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	372
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	1 cut(s)	53
XspI	CTAG	2 cut(s)	30, 290
ZraI	GACGTC	2 cut(s)	253, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.