Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011781

Physical Location & Seq

Genomic Coordinates Forward (+)

9924886 .. 9926372

Gene Structure 1487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G23320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGGTGGAGCTCATGACTCGGAATTACATCTCCGGCGTCGGAGCTGATAGCTTCGCCGTTCAAGAAGCAGCTGCTTCAGGACTCAAAAGTATCGAAAATTTCATCGGTTTAATGTCTCGTGATAGCTTTAACTCTGATCAGCCATCTTCTTCTTCCGCCTCCGCCTCCGCCTCCGCCGCCGCAGATCTTGAATCAGCTCGTAACACAACGGCGGACGCGGCTGTTTCAAAGTTTAAAAGAGTCATATCTCTCTTAGATCGAACTCGAACCGGACACGCCCGGTTTAGACGTGCTCCGGTTCATGTTATTTCTCCGGTTCTTTTACAAGAAGAACCAAAAACGACGCCGTTTCAGTCTCCTCTTCCTCCTCCGCCGCAAATGATCCGAAAAGGTTCGTTTTCTTCATCGATGAAAACGATTGATTTCTCATCTCTCTCCTCTGTAACAACGGAATCAGACAACCAGAAGAAGATTCATCATCATCAACGTCCCTCTGAAACGGCGCCGTTTGCGTCTCAAACTCAAAGCCTCTCCACGACGGTCTCGTCTTTCTCAAAATCAACAAAGAGAAAATGTAACTCTGAGAATCTTCTCACCGGAAAATGCGCTTCCGCTTCTTCCTCCGGTCGTTGTCATTGCTCGAAGAAAAGAAAGATAAAACAGAGGAGAATAATTAGGGTTCCGGCGATAAGTGCAAAAATGTCCGATGTACCACCGGACGATTATTCATGGAGGAAATACGGACAAAAACCAATTAAAGGATCTCCACATCCAAGAGGATATTATAAGTGTAGTAGCGTAAGAGGTTGTCCAGCACGTAAACATGTTGAGAGAGCAGCTGATGATTCGTCCATGTTGATTGTTACTTATGAAGGAGATCATAATCATTCTCTCTCCGCCGCTGATCTCGCCGGAGCCGCCGTTGCTGATCTTATTTTGGAATCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

317

Amino Acids

34.26

Weight (kDa)

9.73

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	190 - 237	1.3e-17	Plant zinc cluster domain
WRKY	PF03106	241 - 260	2e-06	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23320 AT2G23320
fragaria_vesca	FvH4_1g16480 FvH4_1g16480
malus_domestica	MD02G1177500.v1.1 MD15G1287300.v1.1
prunus_persica	Prupe.6G230600_v2.0.a1
pyrus_communis	pycom02g14340 pycom15g25080
rosa_chinensis	RchiOBHm_Chr2g0106361
rosa_laevigata	RLG00000017492
rosa_multiflora	Rmu_sc0016473.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137250
rosa_rugosa	Rorug02G0135000
rosa_samantha	Rh2AG186100 Rh2BG196300 Rh2CG191100 Rh2DG192200
rosa_wichuraiana	Rw2G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	789
AasI	GACNNNNNNGTC	1 cut(s)	547
AccB1I	GGYRCC	1 cut(s)	505
AccII	CGCG	1 cut(s)	221
AclWI	GGATC	2 cut(s)	379, 772
AcsI	RAATTY	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	63
AcyI	GRCGYC	3 cut(s)	39, 347, 506
AfaI	GTAC	1 cut(s)	714
AfiI	CCNNNNNNNGG	1 cut(s)	761
AflIII	ACRYGT	1 cut(s)	826
AgsI	TTSAA	3 cut(s)	65, 194, 231
AjiI	CACGTC	1 cut(s)	293
AluBI	AGCT	7 cut(s)	13, 47, 54, 74, 129, 200, 842
AluI	AGCT	7 cut(s)	13, 47, 54, 74, 129, 200, 842
Alw21I	GWGCWC	2 cut(s)	15, 298
Alw26I	GTCTC	4 cut(s)	123, 363, 522, 550
AlwI	GGATC	2 cut(s)	379, 772
ApeKI	GCWGC	3 cut(s)	71, 74, 839
ApoI	RAATTY	1 cut(s)	100
Asp700I	GAANNNNTTC	1 cut(s)	394
AspLEI	GCGC	2 cut(s)	508, 611
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	15
BauI	CACGAG	1 cut(s)	120
Bbv12I	GWGCWC	2 cut(s)	15, 298
BbvI	GCAGC	3 cut(s)	61, 83, 851
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	6 cut(s)	44, 228, 334, 493, 519, 908
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	4 cut(s)	123, 363, 522, 550
BfoI	RGCGCY	1 cut(s)	509
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	9 cut(s)	72, 75, 180, 183, 222, 377, 840, 903, 921
BlsI	GCNGC	9 cut(s)	73, 76, 181, 184, 223, 378, 841, 904, 922
Bme1390I	CCNGG	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	293
BmiI	GGNNCC	3 cut(s)	507, 684, 919
BmrFI	CCNGG	1 cut(s)	283
BpuMI	CCSGG	1 cut(s)	283
Bsa29I	ATCGAT	1 cut(s)	410
BsaAI	YACGTR	1 cut(s)	821
BsaBI	GATNNNNATC	1 cut(s)	885
BsaHI	GRCGYC	3 cut(s)	39, 347, 506
BsaI	GGTCTC	1 cut(s)	550
BsaWI	WCCGGW	6 cut(s)	272, 298, 316, 599, 626, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	909, 939
Bsc4I	CCNNNNNNNGG	1 cut(s)	761
Bse3DI	GCAATG	1 cut(s)	637
Bse8I	GATNNNNATC	1 cut(s)	885
BseCI	ATCGAT	1 cut(s)	410
BseGI	GGATG	1 cut(s)	772
BseJI	GATNNNNATC	1 cut(s)	885
BseLI	CCNNNNNNNGG	1 cut(s)	761
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	1 cut(s)	576
BseRI	GAGGAG	4 cut(s)	351, 360, 430, 682
BseXI	GCAGC	3 cut(s)	61, 83, 851
Bsh1236I	CGCG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	631
BshNI	GGYRCC	1 cut(s)	505
BshVI	ATCGAT	1 cut(s)	410
BsiEI	CGRYCG	1 cut(s)	631
BsiHKAI	GWGCWC	2 cut(s)	15, 298
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	761
BsmAI	GTCTC	4 cut(s)	123, 363, 522, 550
BsmBI	CGTCTC	1 cut(s)	522
BsmFI	GGGAC	1 cut(s)	477
Bso31I	GGTCTC	1 cut(s)	550
Bsp1286I	GDGCHC	2 cut(s)	15, 298
Bsp143I	GATC	8 cut(s)	139, 187, 259, 384, 764, 880, 907, 931
BspCNI	CTCAG	1 cut(s)	577
BspDI	ATCGAT	1 cut(s)	410
BspFNI	CGCG	1 cut(s)	221
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	3 cut(s)	507, 684, 919
BspPI	GGATC	2 cut(s)	379, 772
BspT107I	GGYRCC	1 cut(s)	505
BspTNI	GGTCTC	1 cut(s)	550
BsrDI	GCAATG	1 cut(s)	637
BssMI	GATC	8 cut(s)	139, 187, 259, 384, 764, 880, 907, 931
BssNI	GRCGYC	3 cut(s)	39, 347, 506
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	3 cut(s)	39, 347, 506
BstBAI	YACGTR	1 cut(s)	821
BstDEI	CTNAG	2 cut(s)	256, 585
BstF5I	GGATG	1 cut(s)	772
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	2 cut(s)	508, 611
BstKTI	GATC	8 cut(s)	142, 190, 262, 387, 767, 883, 910, 934
BstMAI	GTCTC	4 cut(s)	123, 363, 522, 550
BstMBI	GATC	8 cut(s)	139, 187, 259, 384, 764, 880, 907, 931
BstMCI	CGRYCG	1 cut(s)	631
BstMWI	GCNNNNNNNGC	7 cut(s)	179, 221, 512, 695, 911, 920, 926
BstNSI	RCATGY	1 cut(s)	830
BstSCI	CCNGG	1 cut(s)	281
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	3 cut(s)	61, 83, 851
BstX2I	RGATCY	2 cut(s)	187, 764
BstYI	RGATCY	2 cut(s)	187, 764
Bsu15I	ATCGAT	1 cut(s)	410
BsuTUI	ATCGAT	1 cut(s)	410
BtrI	CACGTC	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	772
CciI	TCATGA	1 cut(s)	15
CfoI	GCGC	2 cut(s)	508, 611
ClaI	ATCGAT	1 cut(s)	410
CseI	GACGC	4 cut(s)	28, 227, 355, 504
Csp6I	GTAC	1 cut(s)	713
CviAII	CATG	5 cut(s)	16, 305, 732, 827, 856
CviQI	GTAC	1 cut(s)	713
DdeI	CTNAG	2 cut(s)	256, 585
DinI	GGCGCC	1 cut(s)	507
DpnI	GATC	8 cut(s)	141, 189, 261, 386, 766, 882, 909, 933
DpnII	GATC	8 cut(s)	139, 187, 259, 384, 764, 880, 907, 931
DraI	TTTAAA	1 cut(s)	238
DrdI	GACNNNNNNGTC	1 cut(s)	547
DseDI	GACNNNNNNGTC	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	7 cut(s)	148, 154, 160, 166, 230, 363, 889
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	15
EgeI	GGCGCC	1 cut(s)	507
EheI	GGCGCC	1 cut(s)	507
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	5 cut(s)	19, 308, 735, 830, 859
FaiI	YATR	9 cut(s)	17, 248, 306, 733, 789, 828, 857, 873, 885
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	5 cut(s)	15, 304, 731, 826, 855
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	9 cut(s)	72, 75, 180, 183, 222, 377, 840, 903, 921
FokI	GGATG	1 cut(s)	759
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	9 cut(s)	72, 75, 180, 183, 222, 377, 840, 903, 921
GlaI	GCGC	2 cut(s)	507, 610
GluI	GCNGC	9 cut(s)	72, 75, 180, 183, 222, 377, 840, 903, 921
HaeII	RGCGCY	1 cut(s)	509
HgaI	GACGC	4 cut(s)	28, 227, 355, 504
HhaI	GCGC	2 cut(s)	508, 611
Hin1I	GRCGYC	3 cut(s)	39, 347, 506
Hin1II	CATG	5 cut(s)	19, 308, 735, 830, 859
Hin6I	GCGC	2 cut(s)	506, 609
HinP1I	GCGC	2 cut(s)	506, 609
HinfI	GANTC	9 cut(s)	19, 84, 194, 243, 455, 475, 589, 848, 944
HphI	GGTGA	1 cut(s)	589
Hpy166II	GTNNAC	1 cut(s)	824
Hpy188I	TCNGA	8 cut(s)	24, 44, 139, 389, 460, 499, 586, 709
Hpy188III	TCNNGA	6 cut(s)	16, 65, 81, 122, 191, 951
Hpy8I	GTNNAC	1 cut(s)	824
Hpy99I	CGWCG	3 cut(s)	44, 349, 544
HpyAV	CCTTC	1 cut(s)	869
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	3 cut(s)	292, 490, 820
HpyCH4V	TGCA	1 cut(s)	698
HpyF10VI	GCNNNNNNNGC	7 cut(s)	179, 221, 512, 695, 911, 920, 926
HpyF3I	CTNAG	2 cut(s)	256, 585
HpySE526I	ACGT	3 cut(s)	292, 490, 820
Hsp92I	GRCGYC	3 cut(s)	39, 347, 506
Hsp92II	CATG	5 cut(s)	19, 308, 735, 830, 859
HspAI	GCGC	2 cut(s)	506, 609
KasI	GGCGCC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	8 cut(s)	139, 187, 259, 384, 764, 880, 907, 931
LmnI	GCTCC	4 cut(s)	10, 44, 301, 917
Lsp1109I	GCAGC	3 cut(s)	61, 83, 851
MaeII	ACGT	3 cut(s)	292, 490, 820
MaeIII	GTNAC	4 cut(s)	203, 445, 578, 865
MalI	GATC	8 cut(s)	141, 189, 261, 386, 766, 882, 909, 933
MboI	GATC	8 cut(s)	139, 187, 259, 384, 764, 880, 907, 931
MflI	RGATCY	2 cut(s)	187, 764
MhlI	GDGCHC	2 cut(s)	15, 298
MluCI	AATT	4 cut(s)	25, 100, 675, 756
Mly113I	GGCGCC	1 cut(s)	506
MlyI	GAGTC	3 cut(s)	13, 78, 252
MmeI	TCCRAC	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	394
MseI	TTAA	4 cut(s)	113, 132, 237, 759
MspA1I	CMGCKG	3 cut(s)	74, 842, 905
MspR9I	CCNGG	1 cut(s)	283
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	7 cut(s)	179, 221, 512, 695, 911, 920, 926
NarI	GGCGCC	1 cut(s)	506
NciI	CCSGG	1 cut(s)	283
NdeII	GATC	8 cut(s)	139, 187, 259, 384, 764, 880, 907, 931
NlaIII	CATG	5 cut(s)	19, 308, 735, 830, 859
NlaIV	GGNNCC	3 cut(s)	507, 684, 919
NspI	RCATGY	1 cut(s)	830
PagI	TCATGA	1 cut(s)	15
PciI	ACATGT	1 cut(s)	826
PcsI	WCGNNNNNNNCGW	2 cut(s)	416, 545
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	6 cut(s)	194, 455, 475, 589, 848, 944
PkrI	GCNGC	9 cut(s)	73, 76, 181, 184, 223, 378, 841, 904, 922
PleI	GAGTC	3 cut(s)	13, 78, 251
PluTI	GGCGCC	1 cut(s)	509
PpsI	GAGTC	3 cut(s)	13, 78, 251
Ppu21I	YACGTR	1 cut(s)	821
PscI	ACATGT	1 cut(s)	826
PsiI	TTATAA	1 cut(s)	789
Psp124BI	GAGCTC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	507, 684, 919
PsuI	RGATCY	2 cut(s)	187, 764
PvuII	CAGCTG	2 cut(s)	74, 842
RsaI	GTAC	1 cut(s)	714
RsaNI	GTAC	1 cut(s)	713
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	4 cut(s)	113, 132, 237, 759
SatI	GCNGC	9 cut(s)	72, 75, 180, 183, 222, 377, 840, 903, 921
Sau3AI	GATC	8 cut(s)	139, 187, 259, 384, 764, 880, 907, 931
SchI	GAGTC	3 cut(s)	13, 78, 252
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	2 cut(s)	15, 298
SfoI	GGCGCC	1 cut(s)	507
Sse9I	AATT	4 cut(s)	25, 100, 675, 756
SspDI	GGCGCC	1 cut(s)	505
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	3 cut(s)	295, 493, 823
TaqI	TCGA	5 cut(s)	96, 262, 268, 410, 644
TasI	AATT	4 cut(s)	25, 100, 675, 756
TauI	GCSGC	6 cut(s)	182, 185, 224, 379, 905, 923
TfiI	GAWTC	6 cut(s)	194, 455, 475, 589, 848, 944
Tru1I	TTAA	4 cut(s)	113, 132, 237, 759
Tru9I	TTAA	4 cut(s)	113, 132, 237, 759
TseI	GCWGC	3 cut(s)	71, 74, 839
TspDTI	ATGAA	7 cut(s)	94, 293, 396, 428, 467, 720, 888
TspGWI	ACGGA	2 cut(s)	467, 759
XapI	RAATTY	1 cut(s)	100
XceI	RCATGY	1 cut(s)	830
XmnI	GAANNNNTTC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.