Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0011781

Physical Location & Seq

Genomic Coordinates Reverse (-)

19416878 .. 19418129

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCCGTTGATTTCATGGGTTACAGAAACACCAGCAGCAACAGCAGCTTCTCCGTCAAGTTGGAAGAAAACGCCGTGCAGGAAGCGGCTTCCGGCCTCGAGAGCGTCGAGAAGCTTATTCGGTTGCTGTCGCAGGCGCAGCAGAACCGGCACCAAGAGAAATATCCGTCGACGGCTATGGACATGGATTGCAGAGCCGTCGCCGACGTCGCCGTTTCCAAGTTCAAGAAGGTCATTTCTCTTCTGGGTCGGACCCGGACCGGCCACGCCCGGTTCCGGCGAGCCCCTTTGACTTTGACTTCCGGGTCGTCTTTCCAACCCCAATACCAGAGCCATAGCCAAGACATCGTCGTCAAGCAAGCTCCTTTAGAGTCCACCGAAGTTTACCATGCGACGCCGATCCAGCAGATCCCGCCTCCTCATCACCATCACCACAGTATGGTGCTCGAGAGCACTATGGACTCCTCTAACACTATAAATTTCTCGTATTCAGCTGCGACGTCGTTTATGTCGTCGTTGACCGGCGACTCCGACAGCAAGCAACCAATGTCGTCTTCGGCTTTTCAAATTACCAATTTGTCCCAGGTTTCCTCAGCCGGAAAGCCACCGCTTTCCTCCACCTCGCTGAAGCGGAAGTGCGGCTCCGAGAACTTGGTTTCTGGGAAGTGCGGTGTTGGATCCTCCGGCCGCTGCCATTGCTCTAAGAAGAGAAAGCTGAGACAGAAGAGGGTTGTAAGAGTTCCAGCTATAAGCTTGAAGATGGCGGATATCCCACCCGACGATTACTCCTGGAGAAAGTACGGACAGAAACCCATCAAGGGATCTCCACATCCAAGGGGATACTACAAATGCAGCAGCGTAAGAGGATGCCCGGCTCGAAAACACGTAGAGAGAGCTCTGGACGATCCGGCAATGCTAGTGGTTACCTACGAAGGTGACCACAATCACTCTCTCTCAGTTGCAGAGACCTCCAATCTCATTCTAGAATCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

332

Amino Acids

36.37

Weight (kDa)

9.5

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	210 - 256	2.1e-18	Plant zinc cluster domain
WRKY	PF03106	260 - 316	1.3e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23320 AT2G23320
fragaria_vesca	FvH4_1g16480 FvH4_1g16480
malus_domestica	MD02G1177500.v1.1 MD15G1287300.v1.1
prunus_persica	Prupe.6G230600_v2.0.a1
pyrus_communis	pycom02g14340 pycom15g25080
rosa_chinensis	RchiOBHm_Chr2g0106361
rosa_laevigata	RLG00000017492
rosa_multiflora	Rmu_sc0016473.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137250
rosa_rugosa	Rorug02G0135000
rosa_samantha	Rh2AG186100 Rh2BG196300 Rh2CG191100 Rh2DG192200
rosa_wichuraiana	Rw2G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	304, 350
AatII	GACGTC	2 cut(s)	210, 503
AccB1I	GGYRCC	1 cut(s)	150
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	170
AciI	CCGC	8 cut(s)	86, 413, 608, 631, 639, 669, 688, 764
AclWI	GGATC	6 cut(s)	394, 403, 672, 685, 829, 899
AcoI	YGGCCR	3 cut(s)	3, 262, 685
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	647
AcyI	GRCGYC	3 cut(s)	207, 395, 500
AfaI	GTAC	1 cut(s)	800
AfiI	CCNNNNNNNGG	3 cut(s)	276, 439, 818
AflIII	ACRYGT	1 cut(s)	883
AgsI	TTSAA	3 cut(s)	226, 566, 757
AjnI	CCWGG	2 cut(s)	582, 788
AjuI	GAANNNNNNNTTGG	2 cut(s)	538, 570
AluBI	AGCT	8 cut(s)	48, 115, 362, 494, 715, 746, 753, 896
AluI	AGCT	8 cut(s)	48, 115, 362, 494, 715, 746, 753, 896
Alw21I	GWGCWC	3 cut(s)	447, 455, 898
Alw26I	GTCTC	2 cut(s)	712, 959
AlwI	GGATC	6 cut(s)	394, 403, 672, 685, 829, 899
Ama87I	CYCGRG	2 cut(s)	98, 446
AoxI	GGCC	4 cut(s)	3, 94, 262, 685
ApeKI	GCWGC	7 cut(s)	36, 45, 139, 494, 690, 852, 855
ApoI	RAATTY	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	252, 258
AsuC2I	CCSGG	4 cut(s)	256, 271, 304, 872
AsuHPI	GGTGA	3 cut(s)	416, 422, 947
AvaI	CYCGRG	2 cut(s)	98, 446
AvaII	GGWCC	2 cut(s)	252, 258
BamHI	GGATCC	1 cut(s)	677
BanI	GGYRCC	1 cut(s)	150
BanII	GRGCYC	2 cut(s)	286, 898
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	3 cut(s)	447, 455, 898
BbvCI	CCTCAGC	1 cut(s)	592
BbvI	GCAGC	7 cut(s)	48, 57, 151, 481, 677, 864, 867
BccI	CCATC	3 cut(s)	435, 754, 821
BceAI	ACGGC	4 cut(s)	59, 182, 189, 197
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	2 cut(s)	584, 790
BciVI	GTATCC	1 cut(s)	833
BcnI	CCSGG	4 cut(s)	256, 271, 304, 872
BcoDI	GTCTC	2 cut(s)	712, 959
BfaI	CTAG	2 cut(s)	917, 983
BfuI	GTATCC	1 cut(s)	833
Bme1390I	CCNGG	6 cut(s)	256, 271, 304, 584, 790, 872
Bme18I	GGWCC	2 cut(s)	252, 258
BmeT110I	CYCGRG	2 cut(s)	98, 446
BmgT120I	GGNCC	2 cut(s)	252, 258
BmiI	GGNNCC	5 cut(s)	152, 254, 275, 643, 679
BmrFI	CCNGG	6 cut(s)	256, 271, 304, 584, 790, 872
BmsI	GCATC	1 cut(s)	857
BpiI	GAAGAC	1 cut(s)	546
BpmI	CTGGAG	1 cut(s)	811
Bpu10I	CCTNAGC	1 cut(s)	592
BpuMI	CCSGG	4 cut(s)	256, 271, 304, 872
BsaAI	YACGTR	1 cut(s)	886
BsaHI	GRCGYC	3 cut(s)	207, 395, 500
BsaI	GGTCTC	1 cut(s)	959
BsaJI	CCNNGG	2 cut(s)	582, 833
BsaXI	ACNNNNNCTCC	2 cut(s)	770, 800
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 439, 818
Bse118I	RCCGGY	3 cut(s)	147, 260, 521
Bse3DI	GCAATG	2 cut(s)	694, 918
BseBI	CCWGG	2 cut(s)	584, 790
BseDI	CCNNGG	2 cut(s)	582, 833
BseGI	GGATG	2 cut(s)	829, 872
BseLI	CCNNNNNNNGG	3 cut(s)	276, 439, 818
BseMI	GCAATG	2 cut(s)	694, 918
BseMII	CTCAG	3 cut(s)	606, 707, 969
BseRI	GAGGAG	2 cut(s)	408, 454
BseX3I	CGGCCG	1 cut(s)	685
BseXI	GCAGC	7 cut(s)	48, 57, 151, 481, 677, 864, 867
BsgI	GTGCAG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	688
BshFI	GGCC	4 cut(s)	5, 96, 264, 687
BshNI	GGYRCC	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	688
BsiHKAI	GWGCWC	3 cut(s)	447, 455, 898
BsiHKCI	CYCGRG	2 cut(s)	98, 446
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	3 cut(s)	276, 439, 818
BsmAI	GTCTC	2 cut(s)	712, 959
BsmFI	GGGAC	1 cut(s)	565
BsnI	GGCC	4 cut(s)	5, 96, 264, 687
Bso31I	GGTCTC	1 cut(s)	959
BsoBI	CYCGRG	2 cut(s)	98, 446
Bsp1286I	GDGCHC	4 cut(s)	286, 447, 455, 898
Bsp143I	GATC	5 cut(s)	399, 408, 677, 821, 904
BspACI	CCGC	8 cut(s)	86, 413, 608, 631, 639, 669, 688, 764
BspANI	GGCC	4 cut(s)	5, 96, 264, 687
BspCNI	CTCAG	3 cut(s)	605, 708, 968
BspLI	GGNNCC	5 cut(s)	152, 254, 275, 643, 679
BspPI	GGATC	6 cut(s)	394, 403, 672, 685, 829, 899
BspT107I	GGYRCC	1 cut(s)	150
BspTNI	GGTCTC	1 cut(s)	959
BsrDI	GCAATG	2 cut(s)	694, 918
BsrFI	RCCGGY	3 cut(s)	147, 260, 521
BssAI	RCCGGY	3 cut(s)	147, 260, 521
BssECI	CCNNGG	2 cut(s)	582, 833
BssMI	GATC	5 cut(s)	399, 408, 677, 821, 904
BssNI	GRCGYC	3 cut(s)	207, 395, 500
BssT1I	CCWWGG	1 cut(s)	833
Bst2UI	CCWGG	2 cut(s)	584, 790
Bst4CI	ACNGT	1 cut(s)	437
Bst6I	CTCTTC	3 cut(s)	246, 701, 719
BstACI	GRCGYC	3 cut(s)	207, 395, 500
BstBAI	YACGTR	1 cut(s)	886
BstC8I	GCNNGC	4 cut(s)	135, 282, 360, 539
BstDEI	CTNAG	5 cut(s)	592, 702, 716, 955, 993
BstEII	GGTNACC	2 cut(s)	922, 935
BstF5I	GGATG	2 cut(s)	829, 872
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	5 cut(s)	402, 411, 680, 824, 907
BstMAI	GTCTC	2 cut(s)	712, 959
BstMBI	GATC	5 cut(s)	399, 408, 677, 821, 904
BstMCI	CGRYCG	1 cut(s)	688
BstMWI	GCNNNNNNNGC	9 cut(s)	42, 45, 102, 139, 148, 209, 403, 412, 696
BstNI	CCWGG	2 cut(s)	584, 790
BstPI	GGTNACC	2 cut(s)	922, 935
BstSCI	CCNGG	6 cut(s)	254, 269, 302, 582, 788, 870
BstV1I	GCAGC	7 cut(s)	48, 57, 151, 481, 677, 864, 867
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	3 cut(s)	408, 677, 821
BstYI	RGATCY	3 cut(s)	408, 677, 821
BstZI	CGGCCG	1 cut(s)	685
BsuI	GTATCC	1 cut(s)	833
BsuRI	GGCC	4 cut(s)	5, 96, 264, 687
BtsCI	GGATG	2 cut(s)	829, 872
Cac8I	GCNNGC	4 cut(s)	135, 282, 360, 539
CfoI	GCGC	1 cut(s)	139
Cfr10I	RCCGGY	3 cut(s)	147, 260, 521
Cfr13I	GGNCC	2 cut(s)	252, 258
CpoI	CGGWCCG	1 cut(s)	258
CseI	GACGC	2 cut(s)	94, 403
Csp6I	GTAC	1 cut(s)	799
CspCI	CAANNNNNGTGG	2 cut(s)	900, 935
CspI	CGGWCCG	1 cut(s)	258
CviAII	CATG	3 cut(s)	16, 184, 389
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	5 cut(s)	592, 702, 716, 955, 993
DpnI	GATC	5 cut(s)	401, 410, 679, 823, 906
DpnII	GATC	5 cut(s)	399, 408, 677, 821, 904
DrdI	GACNNNNNNGTC	2 cut(s)	304, 350
DseDI	GACNNNNNNGTC	2 cut(s)	304, 350
EaeI	YGGCCR	3 cut(s)	3, 262, 685
EagI	CGGCCG	1 cut(s)	685
Eam1104I	CTCTTC	3 cut(s)	246, 701, 719
EarI	CTCTTC	3 cut(s)	246, 701, 719
EciI	GGCGGA	1 cut(s)	779
Ecl136II	GAGCTC	1 cut(s)	896
EclXI	CGGCCG	1 cut(s)	685
Eco130I	CCWWGG	1 cut(s)	833
Eco24I	GRGCYC	2 cut(s)	286, 898
Eco31I	GGTCTC	1 cut(s)	959
Eco32I	GATATC	1 cut(s)	769
Eco47I	GGWCC	2 cut(s)	252, 258
Eco52I	CGGCCG	1 cut(s)	685
Eco53kI	GAGCTC	1 cut(s)	896
Eco57I	CTGAAG	1 cut(s)	647
Eco88I	CYCGRG	2 cut(s)	98, 446
Eco91I	GGTNACC	2 cut(s)	922, 935
EcoICRI	GAGCTC	1 cut(s)	896
EcoO65I	GGTNACC	2 cut(s)	922, 935
EcoRII	CCWGG	2 cut(s)	582, 788
EcoRV	GATATC	1 cut(s)	769
EcoT14I	CCWWGG	1 cut(s)	833
EcoT38I	GRGCYC	2 cut(s)	286, 898
ErhI	CCWWGG	1 cut(s)	833
FaeI	CATG	3 cut(s)	19, 187, 392
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	3 cut(s)	15, 183, 388
FauI	CCCGC	1 cut(s)	420
FblI	GTMKAC	1 cut(s)	170
FokI	GGATG	2 cut(s)	816, 879
FriOI	GRGCYC	2 cut(s)	286, 898
FspBI	CTAG	2 cut(s)	917, 983
GlaI	GCGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	811
HaeIII	GGCC	4 cut(s)	5, 96, 264, 687
HgaI	GACGC	2 cut(s)	94, 403
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	3 cut(s)	207, 395, 500
Hin1II	CATG	3 cut(s)	19, 187, 392
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	2 cut(s)	171, 519
HindII	GTYRAC	2 cut(s)	171, 519
HindIII	AAGCTT	2 cut(s)	113, 751
HinfI	GANTC	4 cut(s)	371, 461, 527, 986
HphI	GGTGA	3 cut(s)	416, 422, 947
Hpy166II	GTNNAC	4 cut(s)	171, 375, 385, 519
Hpy188I	TCNGA	3 cut(s)	252, 532, 646
Hpy188III	TCNNGA	6 cut(s)	100, 109, 226, 448, 899, 983
Hpy8I	GTNNAC	4 cut(s)	171, 375, 385, 519
HpyAV	CCTTC	2 cut(s)	223, 926
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	3 cut(s)	207, 500, 885
HpyCH4V	TGCA	4 cut(s)	79, 192, 852, 962
HpyF10VI	GCNNNNNNNGC	9 cut(s)	42, 45, 102, 139, 148, 209, 403, 412, 696
HpyF3I	CTNAG	5 cut(s)	592, 702, 716, 955, 993
HpySE526I	ACGT	3 cut(s)	207, 500, 885
Hsp92I	GRCGYC	3 cut(s)	207, 395, 500
Hsp92II	CATG	3 cut(s)	19, 187, 392
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	5 cut(s)	399, 408, 677, 821, 904
LmnI	GCTCC	2 cut(s)	367, 647
Lsp1109I	GCAGC	7 cut(s)	48, 57, 151, 481, 677, 864, 867
LweI	GCATC	1 cut(s)	857
MaeI	CTAG	2 cut(s)	917, 983
MaeII	ACGT	3 cut(s)	207, 500, 885
MaeIII	GTNAC	3 cut(s)	20, 922, 935
MalI	GATC	5 cut(s)	401, 410, 679, 823, 906
MboI	GATC	5 cut(s)	399, 408, 677, 821, 904
MboII	GAAGA	7 cut(s)	77, 233, 546, 718, 736, 769, 981
MflI	RGATCY	3 cut(s)	408, 677, 821
MhlI	GDGCHC	4 cut(s)	286, 447, 455, 898
MluCI	AATT	3 cut(s)	478, 567, 574
MlyI	GAGTC	3 cut(s)	380, 455, 521
MmeI	TCCRAC	5 cut(s)	42, 230, 340, 555, 655
MspA1I	CMGCKG	2 cut(s)	494, 690
MspR9I	CCNGG	6 cut(s)	256, 271, 304, 584, 790, 872
MvaI	CCWGG	2 cut(s)	584, 790
MwoI	GCNNNNNNNGC	9 cut(s)	42, 45, 102, 139, 148, 209, 403, 412, 696
NciI	CCSGG	4 cut(s)	256, 271, 304, 872
NdeII	GATC	5 cut(s)	399, 408, 677, 821, 904
NlaIII	CATG	3 cut(s)	19, 187, 392
NlaIV	GGNNCC	5 cut(s)	152, 254, 275, 643, 679
NmuCI	GTSAC	1 cut(s)	935
PaeR7I	CTCGAG	2 cut(s)	98, 446
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 509
PfeI	GAWTC	1 cut(s)	986
PflFI	GACNNNGTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	788
PleI	GAGTC	3 cut(s)	379, 455, 521
PpsI	GAGTC	3 cut(s)	379, 455, 521
Ppu21I	YACGTR	1 cut(s)	886
Psp124BI	GAGCTC	1 cut(s)	898
Psp6I	CCWGG	2 cut(s)	582, 788
PspEI	GGTNACC	2 cut(s)	922, 935
PspGI	CCWGG	2 cut(s)	582, 788
PspN4I	GGNNCC	5 cut(s)	152, 254, 275, 643, 679
PspPI	GGNCC	2 cut(s)	252, 258
PsuI	RGATCY	3 cut(s)	408, 677, 821
PsyI	GACNNNGTC	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
Rsr2I	CGGWCCG	1 cut(s)	258
RsrII	CGGWCCG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	898
SalI	GTCGAC	1 cut(s)	169
Sau3AI	GATC	5 cut(s)	399, 408, 677, 821, 904
Sau96I	GGNCC	2 cut(s)	252, 258
SchI	GAGTC	3 cut(s)	380, 455, 521
ScrFI	CCNGG	6 cut(s)	256, 271, 304, 584, 790, 872
SduI	GDGCHC	4 cut(s)	286, 447, 455, 898
SfaNI	GCATC	1 cut(s)	857
Sfr274I	CTCGAG	2 cut(s)	98, 446
SgrDI	CGTCGACG	1 cut(s)	169
SinI	GGWCC	2 cut(s)	252, 258
SlaI	CTCGAG	2 cut(s)	98, 446
SmlI	CTYRAG	2 cut(s)	98, 446
SmoI	CTYRAG	2 cut(s)	98, 446
Sse9I	AATT	3 cut(s)	478, 567, 574
SsiI	CCGC	8 cut(s)	86, 413, 608, 631, 639, 669, 688, 764
SspMI	CTAG	2 cut(s)	917, 983
SstI	GAGCTC	1 cut(s)	898
StyD4I	CCNGG	6 cut(s)	254, 269, 302, 582, 788, 870
StyI	CCWWGG	1 cut(s)	833
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	3 cut(s)	210, 503, 888
TaqI	TCGA	5 cut(s)	99, 108, 170, 447, 877
TasI	AATT	3 cut(s)	478, 567, 574
TauI	GCSGC	3 cut(s)	89, 642, 690
TfiI	GAWTC	1 cut(s)	986
TseFI	GTSAC	1 cut(s)	935
TseI	GCWGC	7 cut(s)	36, 45, 139, 494, 690, 852, 855
Tsp45I	GTSAC	1 cut(s)	935
TspDTI	ATGAA	1 cut(s)	4
TspGWI	ACGGA	3 cut(s)	43, 156, 816
Tth111I	GACNNNGTC	1 cut(s)	347
Van91I	CCANNNNNTGG	1 cut(s)	439
VpaK11BI	GGWCC	2 cut(s)	252, 258
XapI	RAATTY	1 cut(s)	478
XbaI	TCTAGA	1 cut(s)	982
XhoI	CTCGAG	2 cut(s)	98, 446
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	2 cut(s)	917, 983
ZraI	GACGTC	2 cut(s)	208, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.