Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011781

Physical Location & Seq

Genomic Coordinates Reverse (-)

11671449 .. 11672050

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0135000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCGCAGTACCAGAGCGAATACCCCAAAGAGTCTCCCACAGACGAGTATGGCAACCCAATTCAGCACGGCGTGACCGGAGCAACCACCGGGCACGGCATTCATGACACCACTCCCGTCACCGGAACCGGCTGCGGAACTCACGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATGAAAGAGAAGCTACCAGGCGGTCAGCTACCAGGCGGTCGCAAGGATGATCCCTACAGTACTACTGCTGGAGAGCACCGTGAGAATAAGGGCACTACTGCACCGGGTTACGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGTGGCATGGTTGACAAGATCAAAGAAAATCTACCATGTGGTCCCAAGGATGATTCCTACCGTACTAATCACACTACCACGACTGGTGCACCGCCTTACACTGCTGCAACAGGGGAGCACCCTGAGAAGAAGGGAATGATGGACAAGATCAAGGAGAAGCTTCCCGGTGGACACAGCACCACTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

172

Amino Acids

18.28

Weight (kDa)

6.55

Isoelectric Point (pI)

10.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	55 - 122	4.9e-07	Dehydrin
Dehydrin	PF00257	109 - 168	7.7e-14	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23320 AT2G23320
fragaria_vesca	FvH4_1g16480 FvH4_1g16480
malus_domestica	MD02G1177500.v1.1 MD15G1287300.v1.1
prunus_persica	Prupe.6G230600_v2.0.a1
pyrus_communis	pycom02g14340 pycom15g25080
rosa_chinensis	RchiOBHm_Chr2g0106361
rosa_laevigata	RLG00000017492
rosa_multiflora	Rmu_sc0016473.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137250
rosa_rugosa	Rorug02G0135000
rosa_samantha	Rh2AG186100 Rh2BG196300 Rh2CG191100 Rh2DG192200
rosa_wichuraiana	Rw2G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	135, 210, 225, 422
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	2 cut(s)	150, 306
AdeI	CACNNNGTG	2 cut(s)	73, 148
AfaI	GTAC	3 cut(s)	11, 250, 394
AfiI	CCNNNNNNNGG	2 cut(s)	122, 299
AjnI	CCWGG	2 cut(s)	205, 220
AluBI	AGCT	3 cut(s)	202, 217, 490
AluI	AGCT	3 cut(s)	202, 217, 490
Alw21I	GWGCWC	5 cut(s)	162, 267, 318, 421, 450
Alw26I	GTCTC	1 cut(s)	39
Alw44I	GTGCAC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	2 cut(s)	150, 306
ApaLI	GTGCAC	1 cut(s)	417
ApeKI	GCWGC	2 cut(s)	132, 434
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	184, 371
AsuC2I	CCSGG	3 cut(s)	91, 294, 495
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	184, 371
BaeGI	GKGCMC	3 cut(s)	96, 284, 421
Bbv12I	GWGCWC	5 cut(s)	162, 267, 318, 421, 450
BbvI	GCAGC	2 cut(s)	119, 421
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	4 cut(s)	85, 112, 160, 316
BciT130I	CCWGG	2 cut(s)	207, 222
BcnI	CCSGG	3 cut(s)	91, 294, 495
BcoDI	GTCTC	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	244
BisI	GCNGC	2 cut(s)	133, 435
BlsI	GCNGC	2 cut(s)	134, 436
BmcAI	AGTACT	1 cut(s)	250
Bme1390I	CCNGG	5 cut(s)	91, 207, 222, 294, 495
Bme18I	GGWCC	2 cut(s)	184, 371
BmgT120I	GGNCC	2 cut(s)	184, 371
BmiI	GGNNCC	2 cut(s)	127, 373
BmrFI	CCNGG	5 cut(s)	91, 207, 222, 294, 495
BpmI	CTGGAG	1 cut(s)	279
BpuMI	CCSGG	3 cut(s)	91, 294, 495
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	2 cut(s)	77, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 299
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	418
BseBI	CCWGG	2 cut(s)	207, 222
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	2 cut(s)	241, 385
BseLI	CCNNNNNNNGG	2 cut(s)	122, 299
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	418
BseSI	GKGCMC	3 cut(s)	96, 284, 421
BseXI	GCAGC	2 cut(s)	119, 421
BsgI	GTGCAG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	2 cut(s)	152, 308
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	5 cut(s)	162, 267, 318, 421, 450
BsiSI	CCGG	8 cut(s)	78, 90, 123, 129, 153, 293, 309, 495
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	122, 299
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	2 cut(s)	152, 308
Bsp1286I	GDGCHC	7 cut(s)	96, 162, 267, 284, 318, 421, 450
Bsp143I	GATC	3 cut(s)	238, 348, 477
BspACI	CCGC	4 cut(s)	135, 210, 225, 422
BspANI	GGCC	2 cut(s)	152, 308
BspCNI	CTCAG	1 cut(s)	445
BspHI	TCATGA	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	127, 373
BspPI	GGATC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	418
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	3 cut(s)	238, 348, 477
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	2 cut(s)	207, 222
Bst4CI	ACNGT	5 cut(s)	164, 248, 269, 320, 392
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	2 cut(s)	241, 385
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	241, 351, 480
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	3 cut(s)	238, 348, 477
BstMCI	CGRYCG	1 cut(s)	229
BstNI	CCWGG	2 cut(s)	207, 222
BstSCI	CCNGG	5 cut(s)	89, 205, 220, 292, 493
BstSFI	CTRYAG	1 cut(s)	244
BstSLI	GKGCMC	3 cut(s)	96, 284, 421
BstV1I	GCAGC	2 cut(s)	119, 421
BsuRI	GGCC	2 cut(s)	152, 308
BtsCI	GGATG	2 cut(s)	241, 385
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	429
CciI	TCATGA	1 cut(s)	103
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	2 cut(s)	184, 371
Csp6I	GTAC	3 cut(s)	10, 249, 393
CviAII	CATG	3 cut(s)	104, 337, 366
CviJI	RGCY	6 cut(s)	132, 152, 202, 217, 308, 490
CviKI_1	RGCY	6 cut(s)	132, 152, 202, 217, 308, 490
CviQI	GTAC	3 cut(s)	10, 249, 393
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	3 cut(s)	240, 350, 479
DpnII	GATC	3 cut(s)	238, 348, 477
DraIII	CACNNNGTG	2 cut(s)	73, 148
EaeI	YGGCCR	2 cut(s)	150, 306
Eco130I	CCWWGG	1 cut(s)	375
Eco47I	GGWCC	2 cut(s)	184, 371
EcoRII	CCWGG	2 cut(s)	205, 220
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	3 cut(s)	107, 340, 369
FaiI	YATR	4 cut(s)	51, 105, 338, 367
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	3 cut(s)	103, 336, 365
Fnu4HI	GCNGC	2 cut(s)	133, 435
FokI	GGATG	2 cut(s)	248, 392
Fsp4HI	GCNGC	2 cut(s)	133, 435
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	133, 435
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	152, 308
HapII	CCGG	8 cut(s)	78, 90, 123, 129, 153, 293, 309, 495
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	107, 340, 369
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	2 cut(s)	32, 383
HpaII	CCGG	8 cut(s)	78, 90, 123, 129, 153, 293, 309, 495
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	4 cut(s)	184, 343, 419, 500
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	4 cut(s)	184, 343, 419, 500
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	5 cut(s)	164, 248, 269, 320, 392
HpyCH4V	TGCA	3 cut(s)	290, 419, 437
HpyF3I	CTNAG	1 cut(s)	453
Hsp92II	CATG	3 cut(s)	107, 340, 369
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	238, 348, 477
LmnI	GCTCC	2 cut(s)	80, 445
Lsp1109I	GCAGC	2 cut(s)	119, 421
MaeIII	GTNAC	3 cut(s)	73, 118, 296
MalI	GATC	3 cut(s)	240, 350, 479
MboI	GATC	3 cut(s)	238, 348, 477
MboII	GAAGA	1 cut(s)	469
MhlI	GDGCHC	7 cut(s)	96, 162, 267, 284, 318, 421, 450
MluCI	AATT	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	41
MspI	CCGG	8 cut(s)	78, 90, 123, 129, 153, 293, 309, 495
MspR9I	CCNGG	5 cut(s)	91, 207, 222, 294, 495
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	2 cut(s)	207, 222
NciI	CCSGG	3 cut(s)	91, 294, 495
NdeII	GATC	3 cut(s)	238, 348, 477
NlaIII	CATG	3 cut(s)	107, 340, 369
NlaIV	GGNNCC	2 cut(s)	127, 373
NmuCI	GTSAC	2 cut(s)	73, 118
PagI	TCATGA	1 cut(s)	103
PctI	GAATGC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	134, 436
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	205, 220
PspGI	CCWGG	2 cut(s)	205, 220
PspN4I	GGNNCC	2 cut(s)	127, 373
PspPI	GGNCC	2 cut(s)	184, 371
RsaI	GTAC	3 cut(s)	11, 250, 394
RsaNI	GTAC	3 cut(s)	10, 249, 393
SatI	GCNGC	2 cut(s)	133, 435
Sau3AI	GATC	3 cut(s)	238, 348, 477
Sau96I	GGNCC	2 cut(s)	184, 371
ScaI	AGTACT	1 cut(s)	250
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	5 cut(s)	91, 207, 222, 294, 495
SduI	GDGCHC	7 cut(s)	96, 162, 267, 284, 318, 421, 450
SetI	ASST	3 cut(s)	204, 219, 492
SfcI	CTRYAG	1 cut(s)	244
SinI	GGWCC	2 cut(s)	184, 371
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	4 cut(s)	135, 210, 225, 422
StyD4I	CCNGG	5 cut(s)	89, 205, 220, 292, 493
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	5 cut(s)	164, 248, 269, 320, 392
TaqI	TCGA	1 cut(s)	514
TasI	AATT	1 cut(s)	60
TatI	WGTACW	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	383
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	2 cut(s)	73, 118
TseI	GCWGC	2 cut(s)	132, 434
Tsp45I	GTSAC	2 cut(s)	73, 118
TspDTI	ATGAA	2 cut(s)	92, 206
TspRI	CASTG	1 cut(s)	436
VneI	GTGCAC	1 cut(s)	417
VpaK11BI	GGWCC	2 cut(s)	184, 371
ZrmI	AGTACT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.