FvH4_1g16480
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
9499332 .. 9501887
2556 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16480.t1

Sequence Viewer

Length: 960 bp
ATGGCCGTCGATTTCATGGGCTATAGAAACTTCTCCTCCGCCAAGCTCGAAGAAAACGCCGTCGTCCAGGAAGCCGCCTCCGGCCTCGAGAGCGTCGAGAAGCTCATACGCCTGCTTTCGTCATCTTCTTCGTCATCCCAGCAGAAACAAGATAGTAATAATAATAACAAGTACCACCACTCCATGGACATGGACTGCACCGCCGTCGCCGACGCCGCCGTCTCCAAGTTCAAGAAAGTCATTTCCCTCCTCGGCCGCACCCGCACCGGCCACGCCCGCTTCCGCCGCGCCCCTCTGGGACCCACTCATGACTCCTCCTCCACTAGGGTCTACCATGCGACGCCGATCCAGCAGATCCCTCCGCCGCCGCCCGCGGTGGTGATGCACCACATGGAGCAGGGGACTAAAGACTCGTCAACCACTATTAACTTCTCGTCGTACTCCTCCGCTGCTACGACATCGTTTATGTCGTCGTTGACTGGCGACTCGGACAGCAAGCAGCAGCACCCCATGTCGTCTTCCGCTTTCCAAATTACCAACATGTCCCAGGTCTCTTCCGCCGGAAAGCCGCCGCTTTCTTCGGCTTCGTTGAAGCGCAAGTGCAGCTCCGACACCTTGGGCTCCGGCAAATGCGGCGCCAGCTCCTCCGGTCGCTGCCATTGCTCTAAGAAAAGAAAGCTGAGATTGAAGAGGGTAGTGAGAGTTCCGGCGATAAGCTTAAAGATGGCGGATATTCCACCGGATGATTACTCTTGGAGAAAGTACGGGCAGAAACCCATCAAGGGCTCACCGCATCCTAGGGGATACTACAAGTGCAGCAGTGTTAGAGGGTGCCCGGCTCGTAAACATGTAGAAAGAGCTTTGGATGATCCATCGATGCTAGTAGTGACATATGAAGCAGAGCACAATCATTCTCTCAATATTGCAGAGGCCTCCAATCTCATCCTAGAATCGAGTTAG

Protein Analysis

320

Amino Acids

34.71

Weight (kDa)

9.61

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_zn_clust PF10533 198 - 244 6.7e-19 Plant zinc cluster domain
WRKY PF03106 248 - 304 2.8e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011781)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AccB1I GGYRCC 2 cut(s) 635, 831
AccB7I CCANNNNNTGG 1 cut(s) 184
AccI GTMKAC 1 cut(s) 330
AccII CGCG 2 cut(s) 288, 374
AclWI GGATC 3 cut(s) 340, 349, 863
AcoI YGGCCR 3 cut(s) 3, 253, 268
AcyI GRCGYC 3 cut(s) 213, 341, 636
AfaI GTAC 3 cut(s) 173, 440, 764
AfiI CCNNNNNNNGG 3 cut(s) 184, 324, 782
AflIII ACRYGT 2 cut(s) 540, 847
AgsI TTSAA 3 cut(s) 232, 592, 688
AjnI CCWGG 2 cut(s) 66, 546
AluBI AGCT 7 cut(s) 46, 103, 606, 642, 679, 717, 860
AluI AGCT 7 cut(s) 46, 103, 606, 642, 679, 717, 860
Alw21I GWGCWC 1 cut(s) 906
Alw26I GTCTC 2 cut(s) 226, 556
AlwI GGATC 3 cut(s) 340, 349, 863
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 5 cut(s) 3, 82, 253, 268, 930
ApeKI GCWGC 6 cut(s) 449, 499, 502, 603, 654, 816
AspA2I CCTAGG 1 cut(s) 797
AspLEI GCGC 3 cut(s) 290, 597, 638
AspS9I GGNCC 1 cut(s) 299
AsuC2I CCSGG 1 cut(s) 836
AsuHPI GGTGA 2 cut(s) 391, 780
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 299
AvrII CCTAGG 1 cut(s) 797
BaeGI GKGCMC 1 cut(s) 836
BanI GGYRCC 2 cut(s) 635, 831
BanII GRGCYC 2 cut(s) 623, 788
BbsI GAAGAC 1 cut(s) 510
Bbv12I GWGCWC 1 cut(s) 906
BbvI GCAGC 6 cut(s) 436, 511, 514, 615, 641, 828
BccI CCATC 3 cut(s) 718, 785, 880
BceAI ACGGC 3 cut(s) 44, 188, 203
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BciT130I CCWGG 2 cut(s) 68, 548
BciVI GTATCC 1 cut(s) 797
BcnI CCSGG 1 cut(s) 836
BcoDI GTCTC 2 cut(s) 226, 556
BfaI CTAG 4 cut(s) 324, 798, 881, 947
BfmI CTRYAG 1 cut(s) 22
BfoI RGCGCY 1 cut(s) 639
BfuI GTATCC 1 cut(s) 797
BlnI CCTAGG 1 cut(s) 797
Bme1390I CCNGG 3 cut(s) 68, 548, 836
Bme18I GGWCC 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 5 cut(s) 300, 301, 622, 637, 833
BmrFI CCNGG 3 cut(s) 68, 548, 836
BmsI GCATC 3 cut(s) 372, 802, 867
BpiI GAAGAC 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 836
Bsa29I ATCGAT 1 cut(s) 875
BsaHI GRCGYC 3 cut(s) 213, 341, 636
BsaI GGTCTC 1 cut(s) 556
BsaJI CCNNGG 6 cut(s) 183, 250, 372, 546, 615, 797
BsaWI WCCGGW 2 cut(s) 647, 739
BsaXI ACNNNNNCTCC 6 cut(s) 20, 50, 164, 194, 302, 332
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 324, 782
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 484
Bse3DI GCAATG 1 cut(s) 658
BseBI CCWGG 2 cut(s) 68, 548
BseCI ATCGAT 1 cut(s) 875
BseDI CCNNGG 6 cut(s) 183, 250, 372, 546, 615, 797
BseGI GGATG 5 cut(s) 134, 748, 793, 871, 942
BseLI CCNNNNNNNGG 3 cut(s) 184, 324, 782
BseMI GCAATG 1 cut(s) 658
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 1 cut(s) 484
BseRI GAGGAG 6 cut(s) 25, 239, 304, 307, 433, 634
BseSI GKGCMC 1 cut(s) 836
BseX3I CGGCCG 1 cut(s) 253
BseXI GCAGC 6 cut(s) 436, 511, 514, 615, 641, 828
BseYI CCCAGC 1 cut(s) 138
BsgI GTGCAG 3 cut(s) 181, 622, 835
Bsh1236I CGCG 2 cut(s) 288, 374
Bsh1285I CGRYCG 2 cut(s) 256, 652
BshFI GGCC 5 cut(s) 5, 84, 255, 270, 932
BshNI GGYRCC 2 cut(s) 635, 831
BshVI ATCGAT 1 cut(s) 875
BsiEI CGRYCG 2 cut(s) 256, 652
BsiHKAI GWGCWC 1 cut(s) 906
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 8 cut(s) 81, 267, 561, 624, 648, 707, 740, 836
BslFI GGGAC 3 cut(s) 312, 415, 529
BslI CCNNNNNNNGG 3 cut(s) 184, 324, 782
BsmAI GTCTC 2 cut(s) 226, 556
BsmBI CGTCTC 1 cut(s) 226
BsmFI GGGAC 3 cut(s) 312, 415, 529
BsnI GGCC 5 cut(s) 5, 84, 255, 270, 932
Bso31I GGTCTC 1 cut(s) 556
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 4 cut(s) 623, 788, 836, 906
Bsp143I GATC 3 cut(s) 345, 354, 868
Bsp19I CCATGG 1 cut(s) 183
BspANI GGCC 5 cut(s) 5, 84, 255, 270, 932
BspCNI CTCAG 1 cut(s) 672
BspDI ATCGAT 1 cut(s) 875
BspFNI CGCG 2 cut(s) 288, 374
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 5 cut(s) 300, 301, 622, 637, 833
BspPI GGATC 3 cut(s) 340, 349, 863
BspT107I GGYRCC 2 cut(s) 635, 831
BspTNI GGTCTC 1 cut(s) 556
BsrDI GCAATG 1 cut(s) 658
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 1 cut(s) 484
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 6 cut(s) 183, 250, 372, 546, 615, 797
BssMI GATC 3 cut(s) 345, 354, 868
BssNI GRCGYC 3 cut(s) 213, 341, 636
BssT1I CCWWGG 3 cut(s) 183, 615, 797
Bst2UI CCWGG 2 cut(s) 68, 548
Bst6I CTCTTC 2 cut(s) 559, 683
BstACI GRCGYC 3 cut(s) 213, 341, 636
BstC8I GCNNGC 5 cut(s) 113, 277, 372, 497, 640
BstDEI CTNAG 2 cut(s) 666, 680
BstDSI CCRYGG 2 cut(s) 183, 372
BstENI CCTNNNNNAGG 1 cut(s) 322
BstF5I GGATG 5 cut(s) 134, 748, 793, 871, 942
BstFNI CGCG 2 cut(s) 288, 374
BstH2I RGCGCY 1 cut(s) 639
BstHHI GCGC 3 cut(s) 290, 597, 638
BstKTI GATC 3 cut(s) 348, 357, 871
BstMAI GTCTC 2 cut(s) 226, 556
BstMBI GATC 3 cut(s) 345, 354, 868
BstMCI CGRYCG 2 cut(s) 256, 652
BstNI CCWGG 2 cut(s) 68, 548
BstNSI RCATGY 2 cut(s) 544, 851
BstSCI CCNGG 3 cut(s) 66, 546, 834
BstSFI CTRYAG 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 836
BstUI CGCG 2 cut(s) 288, 374
BstV1I GCAGC 6 cut(s) 436, 511, 514, 615, 641, 828
BstV2I GAAGAC 1 cut(s) 510
BstX2I RGATCY 1 cut(s) 354
BstXI CCANNNNNNTGG 1 cut(s) 190
BstYI RGATCY 1 cut(s) 354
BstZI CGGCCG 1 cut(s) 253
Bsu15I ATCGAT 1 cut(s) 875
BsuI GTATCC 1 cut(s) 797
BsuRI GGCC 5 cut(s) 5, 84, 255, 270, 932
BsuTUI ATCGAT 1 cut(s) 875
BtgI CCRYGG 2 cut(s) 183, 372
BtsCI GGATG 5 cut(s) 134, 748, 793, 871, 942
BtsI GCAGTG 1 cut(s) 826
BtsIMutI CAGTG 1 cut(s) 826
Cac8I GCNNGC 5 cut(s) 113, 277, 372, 497, 640
CciI TCATGA 1 cut(s) 307
CfoI GCGC 3 cut(s) 290, 597, 638
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 299
Cfr42I CCGCGG 1 cut(s) 375
ClaI ATCGAT 1 cut(s) 875
CseI GACGC 3 cut(s) 82, 221, 349
Csp6I GTAC 3 cut(s) 172, 439, 763
CviAII CATG 9 cut(s) 16, 184, 190, 308, 335, 391, 511, 541, 848
CviQI GTAC 3 cut(s) 172, 439, 763
DdeI CTNAG 2 cut(s) 666, 680
DinI GGCGCC 1 cut(s) 637
DpnI GATC 3 cut(s) 347, 356, 870
DpnII GATC 3 cut(s) 345, 354, 868
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 3 cut(s) 3, 253, 268
EagI CGGCCG 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 559, 683
EarI CTCTTC 2 cut(s) 559, 683
EciI GGCGGA 5 cut(s) 28, 272, 351, 547, 743
EclXI CGGCCG 1 cut(s) 253
Eco130I CCWWGG 3 cut(s) 183, 615, 797
Eco147I AGGCCT 1 cut(s) 932
Eco24I GRGCYC 2 cut(s) 623, 788
Eco31I GGTCTC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 299
Eco52I CGGCCG 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 86
EcoNI CCTNNNNNAGG 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 299
EcoRII CCWGG 2 cut(s) 66, 546
EcoT14I CCWWGG 3 cut(s) 183, 615, 797
EcoT38I GRGCYC 2 cut(s) 623, 788
EgeI GGCGCC 1 cut(s) 637
EheI GGCGCC 1 cut(s) 637
ErhI CCWWGG 3 cut(s) 183, 615, 797
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 9 cut(s) 19, 187, 193, 311, 338, 394, 514, 544, 851
FaqI GGGAC 3 cut(s) 312, 415, 529
FatI CATG 9 cut(s) 15, 183, 189, 307, 334, 390, 510, 540, 847
FauI CCCGC 3 cut(s) 269, 284, 379
FauNDI CATATG 1 cut(s) 892
FblI GTMKAC 1 cut(s) 330
FokI GGATG 5 cut(s) 121, 755, 780, 878, 929
FriOI GRGCYC 2 cut(s) 623, 788
FspBI CTAG 4 cut(s) 324, 798, 881, 947
GlaI GCGC 3 cut(s) 289, 596, 637
GsaI CCCAGC 1 cut(s) 142
HaeII RGCGCY 1 cut(s) 639
HaeIII GGCC 5 cut(s) 5, 84, 255, 270, 932
HapII CCGG 8 cut(s) 81, 267, 561, 624, 648, 707, 740, 836
HgaI GACGC 3 cut(s) 82, 221, 349
HhaI GCGC 3 cut(s) 290, 597, 638
Hin1I GRCGYC 3 cut(s) 213, 341, 636
Hin1II CATG 9 cut(s) 19, 187, 193, 311, 338, 394, 514, 544, 851
Hin6I GCGC 3 cut(s) 288, 595, 636
HinP1I GCGC 3 cut(s) 288, 595, 636
HincII GTYRAC 2 cut(s) 417, 477
HindII GTYRAC 2 cut(s) 417, 477
HindIII AAGCTT 1 cut(s) 715
HinfI GANTC 4 cut(s) 311, 410, 485, 950
HpaII CCGG 8 cut(s) 81, 267, 561, 624, 648, 707, 740, 836
HphI GGTGA 2 cut(s) 391, 780
Hpy166II GTNNAC 4 cut(s) 331, 417, 477, 845
Hpy188I TCNGA 2 cut(s) 490, 610
Hpy188III TCNNGA 4 cut(s) 88, 97, 232, 308
Hpy8I GTNNAC 4 cut(s) 331, 417, 477, 845
Hpy99I CGWCG 8 cut(s) 11, 65, 98, 209, 215, 343, 439, 475
HpyCH4V TGCA 5 cut(s) 198, 385, 603, 816, 926
HpyF3I CTNAG 2 cut(s) 666, 680
Hsp92I GRCGYC 3 cut(s) 213, 341, 636
Hsp92II CATG 9 cut(s) 19, 187, 193, 311, 338, 394, 514, 544, 851
HspAI GCGC 3 cut(s) 288, 595, 636
KasI GGCGCC 1 cut(s) 635
KflI GGGWCCC 1 cut(s) 299
KspI CCGCGG 1 cut(s) 375
Kzo9I GATC 3 cut(s) 345, 354, 868
LmnI GCTCC 4 cut(s) 394, 611, 626, 647
Lsp1109I GCAGC 6 cut(s) 436, 511, 514, 615, 641, 828
LweI GCATC 3 cut(s) 372, 802, 867
MaeI CTAG 4 cut(s) 324, 798, 881, 947
MaeIII GTNAC 1 cut(s) 886
MalI GATC 3 cut(s) 347, 356, 870
MboI GATC 3 cut(s) 345, 354, 868
MboII GAAGA 7 cut(s) 62, 117, 120, 510, 546, 570, 700
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 4 cut(s) 623, 788, 836, 906
MluCI AATT 1 cut(s) 531
Mly113I GGCGCC 1 cut(s) 636
MlyI GAGTC 3 cut(s) 305, 404, 479
MmeI TCCRAC 1 cut(s) 633
MseI TTAA 2 cut(s) 426, 719
MslI CAYNNNNRTG 1 cut(s) 188
MspA1I CMGCKG 2 cut(s) 374, 449
MspI CCGG 8 cut(s) 81, 267, 561, 624, 648, 707, 740, 836
MspR9I CCNGG 3 cut(s) 68, 548, 836
MvaI CCWGG 2 cut(s) 68, 548
MvnI CGCG 2 cut(s) 288, 374
NarI GGCGCC 1 cut(s) 636
NciI CCSGG 1 cut(s) 836
NcoI CCATGG 1 cut(s) 183
NdeI CATATG 1 cut(s) 892
NdeII GATC 3 cut(s) 345, 354, 868
NlaIII CATG 9 cut(s) 19, 187, 193, 311, 338, 394, 514, 544, 851
NlaIV GGNNCC 5 cut(s) 300, 301, 622, 637, 833
NmeAIII GCCGAG 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 886
NspI RCATGY 2 cut(s) 544, 851
PaeR7I CTCGAG 1 cut(s) 86
PagI TCATGA 1 cut(s) 307
PceI AGGCCT 1 cut(s) 932
PciI ACATGT 2 cut(s) 540, 847
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 467
PfeI GAWTC 1 cut(s) 950
PflMI CCANNNNNTGG 1 cut(s) 184
PfoI TCCNGGA 1 cut(s) 66
PleI GAGTC 3 cut(s) 305, 404, 479
PluTI GGCGCC 1 cut(s) 639
PpsI GAGTC 3 cut(s) 305, 404, 479
PpuMI RGGWCCY 1 cut(s) 299
PscI ACATGT 2 cut(s) 540, 847
Psp5II RGGWCCY 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 66, 546
PspFI CCCAGC 1 cut(s) 138
PspGI CCWGG 2 cut(s) 66, 546
PspN4I GGNNCC 5 cut(s) 300, 301, 622, 637, 833
PspPI GGNCC 1 cut(s) 299
PspPPI RGGWCCY 1 cut(s) 299
PsrI GAACNNNNNNTAC 2 cut(s) 687, 719
PsuI RGATCY 1 cut(s) 354
RsaI GTAC 3 cut(s) 173, 440, 764
RsaNI GTAC 3 cut(s) 172, 439, 763
RseI CAYNNNNRTG 1 cut(s) 188
SacII CCGCGG 1 cut(s) 375
SaqAI TTAA 2 cut(s) 426, 719
Sau3AI GATC 3 cut(s) 345, 354, 868
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 3 cut(s) 305, 404, 479
ScrFI CCNGG 3 cut(s) 68, 548, 836
SduI GDGCHC 4 cut(s) 623, 788, 836, 906
SetI ASST 9 cut(s) 48, 105, 552, 608, 617, 644, 681, 719, 862
SfaNI GCATC 3 cut(s) 372, 802, 867
SfcI CTRYAG 1 cut(s) 22
SfoI GGCGCC 1 cut(s) 637
Sfr274I CTCGAG 1 cut(s) 86
Sfr303I CCGCGG 1 cut(s) 375
SgrBI CCGCGG 1 cut(s) 375
SinI GGWCC 1 cut(s) 299
SlaI CTCGAG 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 531
SseBI AGGCCT 1 cut(s) 932
SspDI GGCGCC 1 cut(s) 635
SspI AATATT 1 cut(s) 922
SspMI CTAG 4 cut(s) 324, 798, 881, 947
StuI AGGCCT 1 cut(s) 932
StyD4I CCNGG 3 cut(s) 66, 546, 834
StyI CCWWGG 3 cut(s) 183, 615, 797
TaqI TCGA 6 cut(s) 9, 48, 87, 96, 875, 953
TasI AATT 1 cut(s) 531
TauI GCSGC 9 cut(s) 77, 218, 258, 288, 367, 370, 571, 574, 636
TfiI GAWTC 1 cut(s) 950
Tru1I TTAA 2 cut(s) 426, 719
Tru9I TTAA 2 cut(s) 426, 719
TscAI CASTG 1 cut(s) 826
TseFI GTSAC 1 cut(s) 886
TseI GCWGC 6 cut(s) 449, 499, 502, 603, 654, 816
Tsp45I GTSAC 1 cut(s) 886
TspDTI ATGAA 2 cut(s) 4, 909
TspRI CASTG 1 cut(s) 826
Van91I CCANNNNNTGG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 299
XagI CCTNNNNNAGG 1 cut(s) 322
XceI RCATGY 2 cut(s) 544, 851
XhoI CTCGAG 1 cut(s) 86
XmaJI CCTAGG 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 4 cut(s) 324, 798, 881, 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.