pycom02g14340
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
10942752 .. 10943987
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g14340.1

Sequence Viewer

Length: 999 bp
ATGGCCGTTGATTTCATGGGTTACAGAAACACCATCACCAGCAGCAGCACCAGCAGCTTCTCCGCCAAGTCGGAAGAGAACGCCGTGCAGGAAGCAGCTTCCGGCCTCGAGAGCGTCGAGAAGCTTATTCGCTTGCTGTCCCAGGCACAGCAGAACCAGCACCAAGGGAAATATCCGTCGACGGCTATGGACATGGACTGCAGAGCCGTCGCGGACGTCGCTGTTTCCAAGTTCAAGAAGGTCATTTCTCTTCTTGGTCGGACCCGGACCGGTCACGCCCGGTTCCGGCGAGCCCCTTTGACTTTGAGCTCCGGATCGTCTTCTCAAACCCAAAACCAGAGCCAAGAGATCCTCGTCAAGCATGTTCCGTTACCGGAGTCCACTAAGGTTTACCATGCGACGCCGATCCAGCAGATCCCGCCACCTCACCACCACCACCACGGTACGGTGCTTGAGAGCACTAAGGACTCATCTACCACTATAAATTTCTCGTATCCACCTACGACGTCGTTTATGTCGTCTTTAACCGGAGACTCCGATAGCAAGCAGCCAATGTCGTCATCGTCTTTTCAAATTACCAATATGTCACAGGTTTCCTCAGCCGGAAAGCCGCCGCTTTCCTCCGCCTCGTTGAAGCGGAAGTGCAGCTCCGAGAACTTGGGGTCTGGGAAGTGCGGTGCTGGGTCCTCCGGCCGCTGCCATTGCAAGAAGAGAAAGCTGAGACAGAAGAGGGTCGTGAGAGTCCCGGCTATAAGTTTGAAGTTGGCCGATATCCCACCTGACGATTACTCCTGGAGAAAGTACGGACAAAAACCCATCAAAGGATCTCCACATCCAAGGGGATACTACAAATGCAGCAGTGTAAGAGGATGCCCGGCTCGAAAACACGTAGAGAGAGCTCTGGACGATGCGGCAATGCTAGTGGTTACCTACGAAGGCGAGCACAATCACTCTCTCTCAGTTGCAGAAACCTCCAATCTTATTCTAGAATCTTCTTAG

Protein Analysis

333

Amino Acids

36.16

Weight (kDa)

9.65

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_zn_clust PF10533 212 - 257 4.1e-17 Plant zinc cluster domain
WRKY PF03106 261 - 317 2.3e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011781)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 219, 509
AccI GTMKAC 1 cut(s) 179
AccII CGCG 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 311
AclWI GGATC 5 cut(s) 322, 343, 400, 409, 832
AcoI YGGCCR 3 cut(s) 3, 691, 765
AcsI RAATTY 1 cut(s) 484
AcyI GRCGYC 3 cut(s) 216, 401, 506
AfaI GTAC 2 cut(s) 445, 803
AfiI CCNNNNNNNGG 3 cut(s) 285, 445, 821
AflIII ACRYGT 1 cut(s) 886
AgeI ACCGGT 1 cut(s) 269
AgsI TTSAA 4 cut(s) 235, 572, 634, 760
AjnI CCWGG 2 cut(s) 141, 791
AluBI AGCT 7 cut(s) 57, 98, 124, 309, 648, 718, 899
AluI AGCT 7 cut(s) 57, 98, 124, 309, 648, 718, 899
Alw21I GWGCWC 4 cut(s) 311, 461, 901, 945
Alw26I GTCTC 2 cut(s) 525, 715
AlwI GGATC 5 cut(s) 322, 343, 400, 409, 832
Ama87I CYCGRG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 311
AoxI GGCC 4 cut(s) 3, 103, 691, 765
ApeKI GCWGC 8 cut(s) 42, 45, 54, 95, 547, 645, 696, 855
ApoI RAATTY 1 cut(s) 484
AsiGI ACCGGT 1 cut(s) 269
AspS9I GGNCC 3 cut(s) 261, 267, 684
AsuC2I CCSGG 4 cut(s) 265, 280, 746, 875
AsuHPI GGTGA 2 cut(s) 28, 419
AvaI CYCGRG 1 cut(s) 107
AvaII GGWCC 3 cut(s) 261, 267, 684
BanII GRGCYC 3 cut(s) 295, 311, 901
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 4 cut(s) 311, 461, 901, 945
BbvCI CCTCAGC 1 cut(s) 598
BbvI GCAGC 8 cut(s) 54, 57, 66, 107, 559, 657, 683, 867
BccI CCATC 2 cut(s) 41, 824
BceAI ACGGC 3 cut(s) 68, 191, 198
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BciT130I CCWGG 2 cut(s) 143, 793
BciVI GTATCC 2 cut(s) 504, 836
BcnI CCSGG 4 cut(s) 265, 280, 746, 875
BcoDI GTCTC 2 cut(s) 525, 715
BfaI CTAG 2 cut(s) 920, 986
BfmI CTRYAG 1 cut(s) 199
BfuI GTATCC 2 cut(s) 504, 836
Bme1390I CCNGG 6 cut(s) 143, 265, 280, 746, 793, 875
Bme18I GGWCC 3 cut(s) 261, 267, 684
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 3 cut(s) 261, 267, 684
BmiI GGNNCC 3 cut(s) 263, 284, 685
BmrFI CCNGG 6 cut(s) 143, 265, 280, 746, 793, 875
BmsI GCATC 2 cut(s) 860, 898
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 814
Bpu10I CCTNAGC 1 cut(s) 598
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 4 cut(s) 265, 280, 746, 875
BsaAI YACGTR 1 cut(s) 889
BsaHI GRCGYC 3 cut(s) 216, 401, 506
BsaJI CCNNGG 4 cut(s) 141, 163, 439, 836
BsaWI WCCGGW 4 cut(s) 269, 311, 373, 527
BsaXI ACNNNNNCTCC 2 cut(s) 773, 803
Bsc4I CCNNNNNNNGG 3 cut(s) 285, 445, 821
Bse118I RCCGGY 1 cut(s) 269
Bse3DI GCAATG 2 cut(s) 700, 921
BseAI TCCGGA 1 cut(s) 311
BseBI CCWGG 2 cut(s) 143, 793
BseDI CCNNGG 4 cut(s) 141, 163, 439, 836
BseGI GGATG 2 cut(s) 832, 875
BseLI CCNNNNNNNGG 3 cut(s) 285, 445, 821
BseMI GCAATG 2 cut(s) 700, 921
BseMII CTCAG 3 cut(s) 612, 710, 972
BseX3I CGGCCG 1 cut(s) 691
BseXI GCAGC 8 cut(s) 54, 57, 66, 107, 559, 657, 683, 867
BseYI CCCAGC 1 cut(s) 680
BsgI GTGCAG 2 cut(s) 107, 664
Bsh1236I CGCG 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 694
BshFI GGCC 4 cut(s) 5, 105, 693, 767
BshTI ACCGGT 1 cut(s) 269
BsiEI CGRYCG 1 cut(s) 694
BsiHKAI GWGCWC 4 cut(s) 311, 461, 901, 945
BsiHKCI CYCGRG 1 cut(s) 107
BslFI GGGAC 2 cut(s) 124, 728
BslI CCNNNNNNNGG 3 cut(s) 285, 445, 821
BsmAI GTCTC 2 cut(s) 525, 715
BsmFI GGGAC 2 cut(s) 124, 728
BsnI GGCC 4 cut(s) 5, 105, 693, 767
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 5 cut(s) 295, 311, 461, 901, 945
Bsp13I TCCGGA 1 cut(s) 311
Bsp143I GATC 5 cut(s) 314, 348, 405, 414, 824
BspANI GGCC 4 cut(s) 5, 105, 693, 767
BspCNI CTCAG 3 cut(s) 611, 711, 971
BspEI TCCGGA 1 cut(s) 311
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 3 cut(s) 263, 284, 685
BspMAI CTGCAG 1 cut(s) 203
BspPI GGATC 5 cut(s) 322, 343, 400, 409, 832
BsrDI GCAATG 2 cut(s) 700, 921
BsrFI RCCGGY 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 4 cut(s) 141, 163, 439, 836
BssMI GATC 5 cut(s) 314, 348, 405, 414, 824
BssNI GRCGYC 3 cut(s) 216, 401, 506
BssT1I CCWWGG 2 cut(s) 163, 836
Bst2UI CCWGG 2 cut(s) 143, 793
Bst4CI ACNGT 2 cut(s) 443, 448
Bst6I CTCTTC 4 cut(s) 69, 255, 704, 722
BstACI GRCGYC 3 cut(s) 216, 401, 506
BstBAI YACGTR 1 cut(s) 889
BstC8I GCNNGC 4 cut(s) 134, 291, 545, 941
BstDEI CTNAG 6 cut(s) 384, 462, 598, 719, 958, 996
BstDSI CCRYGG 1 cut(s) 439
BstEII GGTNACC 1 cut(s) 925
BstF5I GGATG 2 cut(s) 832, 875
BstFNI CGCG 1 cut(s) 212
BstKTI GATC 5 cut(s) 317, 351, 408, 417, 827
BstMAI GTCTC 2 cut(s) 525, 715
BstMBI GATC 5 cut(s) 314, 348, 405, 414, 824
BstMCI CGRYCG 1 cut(s) 694
BstMWI GCNNNNNNNGC 8 cut(s) 51, 54, 111, 157, 218, 409, 418, 702
BstNI CCWGG 2 cut(s) 143, 793
BstNSI RCATGY 1 cut(s) 365
BstPI GGTNACC 1 cut(s) 925
BstSCI CCNGG 6 cut(s) 141, 263, 278, 744, 791, 873
BstSFI CTRYAG 1 cut(s) 199
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 8 cut(s) 54, 57, 66, 107, 559, 657, 683, 867
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 3 cut(s) 348, 414, 824
BstYI RGATCY 3 cut(s) 348, 414, 824
BstZI CGGCCG 1 cut(s) 691
BsuI GTATCC 2 cut(s) 504, 836
BsuRI GGCC 4 cut(s) 5, 105, 693, 767
BtgI CCRYGG 1 cut(s) 439
BtsCI GGATG 2 cut(s) 832, 875
BtsI GCAGTG 1 cut(s) 865
BtsIMutI CAGTG 1 cut(s) 865
Cac8I GCNNGC 4 cut(s) 134, 291, 545, 941
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 3 cut(s) 261, 267, 684
CpoI CGGWCCG 1 cut(s) 267
CseI GACGC 2 cut(s) 103, 409
Csp6I GTAC 2 cut(s) 444, 802
CspAI ACCGGT 1 cut(s) 269
CspCI CAANNNNNGTGG 2 cut(s) 903, 938
CspI CGGWCCG 1 cut(s) 267
CviAII CATG 4 cut(s) 16, 193, 362, 395
CviQI GTAC 2 cut(s) 444, 802
DdeI CTNAG 6 cut(s) 384, 462, 598, 719, 958, 996
DpnI GATC 5 cut(s) 316, 350, 407, 416, 826
DpnII GATC 5 cut(s) 314, 348, 405, 414, 824
EaeI YGGCCR 3 cut(s) 3, 691, 765
EagI CGGCCG 1 cut(s) 691
Eam1104I CTCTTC 4 cut(s) 69, 255, 704, 722
EarI CTCTTC 4 cut(s) 69, 255, 704, 722
EciI GGCGGA 2 cut(s) 52, 613
Ecl136II GAGCTC 2 cut(s) 309, 899
EclXI CGGCCG 1 cut(s) 691
Eco130I CCWWGG 2 cut(s) 163, 836
Eco24I GRGCYC 3 cut(s) 295, 311, 901
Eco32I GATATC 1 cut(s) 772
Eco47I GGWCC 3 cut(s) 261, 267, 684
Eco52I CGGCCG 1 cut(s) 691
Eco53kI GAGCTC 2 cut(s) 309, 899
Eco88I CYCGRG 1 cut(s) 107
Eco91I GGTNACC 1 cut(s) 925
EcoICRI GAGCTC 2 cut(s) 309, 899
EcoO109I RGGNCCY 1 cut(s) 684
EcoO65I GGTNACC 1 cut(s) 925
EcoRII CCWGG 2 cut(s) 141, 791
EcoRV GATATC 1 cut(s) 772
EcoT14I CCWWGG 2 cut(s) 163, 836
EcoT38I GRGCYC 3 cut(s) 295, 311, 901
ErhI CCWWGG 2 cut(s) 163, 836
FaeI CATG 4 cut(s) 19, 196, 365, 398
FaiI YATR 9 cut(s) 17, 188, 194, 363, 396, 482, 515, 584, 752
FaqI GGGAC 2 cut(s) 124, 728
FatI CATG 4 cut(s) 15, 192, 361, 394
FauI CCCGC 1 cut(s) 426
FblI GTMKAC 1 cut(s) 179
FokI GGATG 2 cut(s) 819, 882
FriOI GRGCYC 3 cut(s) 295, 311, 901
FspBI CTAG 2 cut(s) 920, 986
GsaI CCCAGC 1 cut(s) 684
GsuI CTGGAG 1 cut(s) 814
HaeIII GGCC 4 cut(s) 5, 105, 693, 767
HgaI GACGC 2 cut(s) 103, 409
Hin1I GRCGYC 3 cut(s) 216, 401, 506
Hin1II CATG 4 cut(s) 19, 196, 365, 398
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 5 cut(s) 377, 467, 533, 741, 989
HphI GGTGA 2 cut(s) 28, 419
Hpy166II GTNNAC 3 cut(s) 180, 381, 391
Hpy188I TCNGA 4 cut(s) 73, 261, 538, 652
Hpy188III TCNNGA 7 cut(s) 109, 118, 235, 312, 736, 902, 986
Hpy8I GTNNAC 3 cut(s) 180, 381, 391
Hpy99I CGWCG 8 cut(s) 119, 181, 184, 212, 221, 403, 508, 511
HpyAV CCTTC 2 cut(s) 232, 929
HpyCH4III ACNGT 2 cut(s) 443, 448
HpyCH4IV ACGT 3 cut(s) 216, 506, 888
HpyCH4V TGCA 6 cut(s) 88, 201, 645, 705, 855, 965
HpyF10VI GCNNNNNNNGC 8 cut(s) 51, 54, 111, 157, 218, 409, 418, 702
HpyF3I CTNAG 6 cut(s) 384, 462, 598, 719, 958, 996
HpySE526I ACGT 3 cut(s) 216, 506, 888
Hsp92I GRCGYC 3 cut(s) 216, 401, 506
Hsp92II CATG 4 cut(s) 19, 196, 365, 398
Kpn2I TCCGGA 1 cut(s) 311
Kzo9I GATC 5 cut(s) 314, 348, 405, 414, 824
LmnI GCTCC 2 cut(s) 314, 653
Lsp1109I GCAGC 8 cut(s) 54, 57, 66, 107, 559, 657, 683, 867
LweI GCATC 2 cut(s) 860, 898
MaeI CTAG 2 cut(s) 920, 986
MaeII ACGT 3 cut(s) 216, 506, 888
MaeIII GTNAC 5 cut(s) 20, 272, 369, 585, 925
MalI GATC 5 cut(s) 316, 350, 407, 416, 826
MboI GATC 5 cut(s) 314, 348, 405, 414, 824
MboII GAAGA 6 cut(s) 86, 242, 312, 721, 739, 984
MflI RGATCY 3 cut(s) 348, 414, 824
MhlI GDGCHC 5 cut(s) 295, 311, 461, 901, 945
MluCI AATT 2 cut(s) 484, 573
MlyI GAGTC 4 cut(s) 386, 461, 527, 750
MmeI TCCRAC 2 cut(s) 51, 239
MroI TCCGGA 1 cut(s) 311
MseI TTAA 1 cut(s) 524
MspA1I CMGCKG 1 cut(s) 696
MspR9I CCNGG 6 cut(s) 143, 265, 280, 746, 793, 875
MvaI CCWGG 2 cut(s) 143, 793
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 8 cut(s) 51, 54, 111, 157, 218, 409, 418, 702
NciI CCSGG 4 cut(s) 265, 280, 746, 875
NdeII GATC 5 cut(s) 314, 348, 405, 414, 824
NlaIII CATG 4 cut(s) 19, 196, 365, 398
NlaIV GGNNCC 3 cut(s) 263, 284, 685
NmuCI GTSAC 2 cut(s) 272, 585
NspI RCATGY 1 cut(s) 365
PaeR7I CTCGAG 1 cut(s) 107
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 515
PfeI GAWTC 1 cut(s) 989
PfoI TCCNGGA 1 cut(s) 791
PinAI ACCGGT 1 cut(s) 269
PleI GAGTC 4 cut(s) 385, 461, 527, 749
PpsI GAGTC 4 cut(s) 385, 461, 527, 749
Ppu21I YACGTR 1 cut(s) 889
PpuMI RGGWCCY 1 cut(s) 684
Psp124BI GAGCTC 2 cut(s) 311, 901
Psp5II RGGWCCY 1 cut(s) 684
Psp6I CCWGG 2 cut(s) 141, 791
PspEI GGTNACC 1 cut(s) 925
PspFI CCCAGC 1 cut(s) 680
PspGI CCWGG 2 cut(s) 141, 791
PspN4I GGNNCC 3 cut(s) 263, 284, 685
PspPI GGNCC 3 cut(s) 261, 267, 684
PspPPI RGGWCCY 1 cut(s) 684
PstI CTGCAG 1 cut(s) 203
PsuI RGATCY 3 cut(s) 348, 414, 824
RsaI GTAC 2 cut(s) 445, 803
RsaNI GTAC 2 cut(s) 444, 802
Rsr2I CGGWCCG 1 cut(s) 267
RsrII CGGWCCG 1 cut(s) 267
SacI GAGCTC 2 cut(s) 311, 901
SalI GTCGAC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 524
Sau3AI GATC 5 cut(s) 314, 348, 405, 414, 824
Sau96I GGNCC 3 cut(s) 261, 267, 684
SchI GAGTC 4 cut(s) 386, 461, 527, 750
ScrFI CCNGG 6 cut(s) 143, 265, 280, 746, 793, 875
SduI GDGCHC 5 cut(s) 295, 311, 461, 901, 945
SfaNI GCATC 2 cut(s) 860, 898
SfcI CTRYAG 1 cut(s) 199
Sfr274I CTCGAG 1 cut(s) 107
SgrDI CGTCGACG 1 cut(s) 178
SinI GGWCC 3 cut(s) 261, 267, 684
SlaI CTCGAG 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 107, 452
SmoI CTYRAG 2 cut(s) 107, 452
Sse9I AATT 2 cut(s) 484, 573
SspMI CTAG 2 cut(s) 920, 986
SstI GAGCTC 2 cut(s) 311, 901
StyD4I CCNGG 6 cut(s) 141, 263, 278, 744, 791, 873
StyI CCWWGG 2 cut(s) 163, 836
TaaI ACNGT 2 cut(s) 443, 448
TaiI ACGT 3 cut(s) 219, 509, 891
TaqI TCGA 4 cut(s) 108, 117, 179, 880
TasI AATT 2 cut(s) 484, 573
TauI GCSGC 4 cut(s) 613, 616, 696, 914
TfiI GAWTC 1 cut(s) 989
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 2 cut(s) 272, 585
TseI GCWGC 8 cut(s) 42, 45, 54, 95, 547, 645, 696, 855
Tsp45I GTSAC 2 cut(s) 272, 585
TspDTI ATGAA 1 cut(s) 4
TspGWI ACGGA 3 cut(s) 165, 357, 819
TspRI CASTG 1 cut(s) 865
VpaK11BI GGWCC 3 cut(s) 261, 267, 684
XapI RAATTY 1 cut(s) 484
XbaI TCTAGA 1 cut(s) 985
XceI RCATGY 1 cut(s) 365
XhoI CTCGAG 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 179
XspI CTAG 2 cut(s) 920, 986
ZraI GACGTC 2 cut(s) 217, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.