Rh2AG186100
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
18132246 .. 18133404
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG186100.1

Sequence Viewer

Length: 945 bp
ATGGCCGTGGATTTCATGGGTTATAGGAATTTCTCGGCCAAGCTAGAAGAAAACGCCGTCGTCCAGGAAGCCGCATCCGGCCTCGAGAGCGTCGAGAAGCTCATCAGATTGCTGTCCTCCCAGCAGAAGCAGGAGAAGTACCACTCCATGGACATGGACTGCACCGCCGTCGCCGACGTCGCCGTTTCCAAGTTCAAGAAAGTTATTTCTCTTCTGGGCCGGACCCGGACCGGCCACGCCCGCTTCCGGAGAGCCCCTCTGCCCTTCACTGCTCCTCCACAAGAGTCCGTCAATCCCATAGATTCTTCGTCGACTAGGGTCTACCATGCGACGCCGATCCAGCAGATCCCTGCGCCGGTGGTTATGCACCACCACGGCAGCGGAATGGAGGGGACTAAAGACTCGTCCACCACTATAAATTTCTCATCGTACTCTTCTGCTGCGACGACATCGTTTATGTCGTCGTTGACTGGGGACTCGGACAGCAAGCAGCCCATGTCGTCTTCCGCGTTTCAAATTACCAATATGTCCCAGGTCTCTTCGGCCGGAAAGCCGCCGCTTTCTTCTGCTTCCATGAAGCGGAAGTGCAGCTCCGACACCTTGGGCTCCGGCAAATGTGGTGCAAGCTCCTCTGGTCGCTGCCATTGCTCAAAGAAAAGAAAGCTGAGATTGAAGAGGGTAGTGAGAGTTCCGGCTATAAGCTTAAAGATGGCTGATATTCCACCGGATGATTACTCTTGGAGAAAGTACGGACAGAAACCCATCAAGGGTTCTCCACATCCAAGGGGATACTACAAGTGTAGCAGTGTTAGAGGGTGCCCGGCTCGTAAACATGTAGAGAGAGCTTTGGATGATCCATCAATGCTAGTAGTGACCTATGAAGCAGAGCATAATCACTCTCTCAATATTGCAGAGGCTTCGAATCTCATCCTAGAATCGAGTTAG

Protein Analysis

314

Amino Acids

34.21

Weight (kDa)

9.56

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_zn_clust PF10533 193 - 239 6.6e-19 Plant zinc cluster domain
WRKY PF03106 243 - 299 2.7e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011781)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 816
AccB7I CCANNNNNTGG 1 cut(s) 148
AccI GTMKAC 2 cut(s) 311, 321
AccII CGCG 1 cut(s) 509
AccIII TCCGGA 1 cut(s) 246
AciI CCGC 8 cut(s) 72, 165, 241, 381, 507, 554, 557, 580
AclWI GGATC 3 cut(s) 331, 340, 848
AcoI YGGCCR 4 cut(s) 3, 36, 232, 543
AcsI RAATTY 2 cut(s) 28, 418
AcyI GRCGYC 2 cut(s) 177, 332
AfaI GTAC 3 cut(s) 140, 431, 749
AfiI CCNNNNNNNGG 5 cut(s) 148, 246, 355, 579, 767
AflIII ACRYGT 1 cut(s) 832
AgsI TTSAA 3 cut(s) 196, 515, 673
AjnI CCWGG 2 cut(s) 63, 531
AluBI AGCT 7 cut(s) 43, 100, 591, 627, 664, 702, 845
AluI AGCT 7 cut(s) 43, 100, 591, 627, 664, 702, 845
Alw26I GTCTC 1 cut(s) 541
AlwI GGATC 3 cut(s) 331, 340, 848
Ama87I CYCGRG 1 cut(s) 83
Aor13HI TCCGGA 1 cut(s) 246
AoxI GGCC 6 cut(s) 3, 36, 79, 217, 232, 543
ApeKI GCWGC 5 cut(s) 378, 440, 490, 588, 639
ApoI RAATTY 2 cut(s) 28, 418
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 3 cut(s) 217, 222, 228
AsuC2I CCSGG 2 cut(s) 226, 821
AsuII TTCGAA 1 cut(s) 920
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 2 cut(s) 222, 228
BaeGI GKGCMC 1 cut(s) 821
BanI GGYRCC 1 cut(s) 816
BanII GRGCYC 2 cut(s) 256, 608
BbsI GAAGAC 1 cut(s) 495
BbvI GCAGC 5 cut(s) 390, 427, 502, 600, 626
BccI CCATC 3 cut(s) 703, 770, 865
BceAI ACGGC 4 cut(s) 41, 152, 167, 391
BcgI CGANNNNNNTGC 4 cut(s) 151, 185, 900, 934
BciT130I CCWGG 2 cut(s) 65, 533
BciVI GTATCC 1 cut(s) 782
BcnI CCSGG 2 cut(s) 226, 821
BcoDI GTCTC 1 cut(s) 541
BfaI CTAG 4 cut(s) 44, 315, 866, 932
BfuI GTATCC 1 cut(s) 782
BisI GCNGC 8 cut(s) 72, 379, 441, 491, 554, 557, 589, 640
BlsI GCNGC 8 cut(s) 73, 380, 442, 492, 555, 558, 590, 641
Bme1390I CCNGG 4 cut(s) 65, 226, 533, 821
Bme18I GGWCC 2 cut(s) 222, 228
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 3 cut(s) 217, 222, 228
BmiI GGNNCC 3 cut(s) 224, 607, 818
BmrFI CCNGG 4 cut(s) 65, 226, 533, 821
BmrI ACTGGG 1 cut(s) 480
BmsI GCATC 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 480
BoxI GACNNNNGTC 1 cut(s) 317
BpiI GAAGAC 1 cut(s) 495
BplI GAGNNNNNCTC 2 cut(s) 241, 273
Bpu14I TTCGAA 1 cut(s) 920
BpuMI CCSGG 2 cut(s) 226, 821
BsaHI GRCGYC 2 cut(s) 177, 332
BsaI GGTCTC 1 cut(s) 541
BsaJI CCNNGG 6 cut(s) 6, 147, 373, 531, 600, 782
BsaWI WCCGGW 2 cut(s) 246, 724
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 5 cut(s) 148, 246, 355, 579, 767
Bse118I RCCGGY 2 cut(s) 230, 355
Bse1I ACTGG 1 cut(s) 475
Bse3DI GCAATG 1 cut(s) 643
BseAI TCCGGA 1 cut(s) 246
BseBI CCWGG 2 cut(s) 65, 533
BseDI CCNNGG 6 cut(s) 6, 147, 373, 531, 600, 782
BseGI GGATG 5 cut(s) 74, 733, 778, 856, 927
BseLI CCNNNNNNNGG 5 cut(s) 148, 246, 355, 579, 767
BseMI GCAATG 1 cut(s) 643
BseMII CTCAG 1 cut(s) 656
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 2 cut(s) 264, 619
BseSI GKGCMC 1 cut(s) 821
BseX3I CGGCCG 1 cut(s) 543
BseXI GCAGC 5 cut(s) 390, 427, 502, 600, 626
BseYI CCCAGC 1 cut(s) 120
BsgI GTGCAG 2 cut(s) 145, 607
Bsh1236I CGCG 1 cut(s) 509
Bsh1285I CGRYCG 1 cut(s) 546
BshFI GGCC 6 cut(s) 5, 38, 81, 219, 234, 545
BshNI GGYRCC 1 cut(s) 816
BsiEI CGRYCG 1 cut(s) 546
BsiHKCI CYCGRG 1 cut(s) 83
BslFI GGGAC 3 cut(s) 406, 488, 514
BslI CCNNNNNNNGG 5 cut(s) 148, 246, 355, 579, 767
BsmAI GTCTC 1 cut(s) 541
BsmFI GGGAC 3 cut(s) 406, 488, 514
BsnI GGCC 6 cut(s) 5, 38, 81, 219, 234, 545
Bso31I GGTCTC 1 cut(s) 541
BsoBI CYCGRG 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 920
Bsp1286I GDGCHC 3 cut(s) 256, 608, 821
Bsp13I TCCGGA 1 cut(s) 246
Bsp143I GATC 3 cut(s) 336, 345, 853
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 8 cut(s) 72, 165, 241, 381, 507, 554, 557, 580
BspANI GGCC 6 cut(s) 5, 38, 81, 219, 234, 545
BspCNI CTCAG 1 cut(s) 657
BspEI TCCGGA 1 cut(s) 246
BspFNI CGCG 1 cut(s) 509
BspLI GGNNCC 3 cut(s) 224, 607, 818
BspPI GGATC 3 cut(s) 331, 340, 848
BspT104I TTCGAA 1 cut(s) 920
BspT107I GGYRCC 1 cut(s) 816
BspTNI GGTCTC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 643
BsrFI RCCGGY 2 cut(s) 230, 355
BsrI ACTGG 1 cut(s) 475
BssAI RCCGGY 2 cut(s) 230, 355
BssECI CCNNGG 6 cut(s) 6, 147, 373, 531, 600, 782
BssMI GATC 3 cut(s) 336, 345, 853
BssNI GRCGYC 2 cut(s) 177, 332
BssT1I CCWWGG 3 cut(s) 147, 600, 782
Bst2UI CCWGG 2 cut(s) 65, 533
Bst6I CTCTTC 4 cut(s) 216, 439, 544, 668
BstACI GRCGYC 2 cut(s) 177, 332
BstBI TTCGAA 1 cut(s) 920
BstC8I GCNNGC 3 cut(s) 241, 488, 625
BstDEI CTNAG 1 cut(s) 665
BstDSI CCRYGG 3 cut(s) 6, 147, 373
BstF5I GGATG 5 cut(s) 74, 733, 778, 856, 927
BstFNI CGCG 1 cut(s) 509
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 3 cut(s) 339, 348, 856
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 3 cut(s) 336, 345, 853
BstMCI CGRYCG 1 cut(s) 546
BstMWI GCNNNNNNNGC 5 cut(s) 87, 179, 240, 340, 645
BstNI CCWGG 2 cut(s) 65, 533
BstNSI RCATGY 1 cut(s) 836
BstPAI GACNNNNGTC 1 cut(s) 317
BstSCI CCNGG 4 cut(s) 63, 224, 531, 819
BstSLI GKGCMC 1 cut(s) 821
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 5 cut(s) 390, 427, 502, 600, 626
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 345
BstXI CCANNNNNNTGG 1 cut(s) 154
BstYI RGATCY 1 cut(s) 345
BstZI CGGCCG 1 cut(s) 543
BsuI GTATCC 1 cut(s) 782
BsuRI GGCC 6 cut(s) 5, 38, 81, 219, 234, 545
BtgI CCRYGG 3 cut(s) 6, 147, 373
BtsCI GGATG 5 cut(s) 74, 733, 778, 856, 927
BtsI GCAGTG 2 cut(s) 267, 811
BtsIMutI CAGTG 2 cut(s) 267, 811
Cac8I GCNNGC 3 cut(s) 241, 488, 625
CfoI GCGC 1 cut(s) 355
Cfr10I RCCGGY 2 cut(s) 230, 355
Cfr13I GGNCC 3 cut(s) 217, 222, 228
CpoI CGGWCCG 1 cut(s) 228
CseI GACGC 2 cut(s) 79, 340
Csp6I GTAC 3 cut(s) 139, 430, 748
CspI CGGWCCG 1 cut(s) 228
CviAII CATG 7 cut(s) 16, 148, 154, 326, 496, 574, 833
CviQI GTAC 3 cut(s) 139, 430, 748
DdeI CTNAG 1 cut(s) 665
DpnI GATC 3 cut(s) 338, 347, 855
DpnII GATC 3 cut(s) 336, 345, 853
EaeI YGGCCR 4 cut(s) 3, 36, 232, 543
EagI CGGCCG 1 cut(s) 543
Eam1104I CTCTTC 4 cut(s) 216, 439, 544, 668
EarI CTCTTC 4 cut(s) 216, 439, 544, 668
EclXI CGGCCG 1 cut(s) 543
Eco130I CCWWGG 3 cut(s) 147, 600, 782
Eco24I GRGCYC 2 cut(s) 256, 608
Eco31I GGTCTC 1 cut(s) 541
Eco47I GGWCC 2 cut(s) 222, 228
Eco52I CGGCCG 1 cut(s) 543
Eco88I CYCGRG 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 63, 531
EcoT14I CCWWGG 3 cut(s) 147, 600, 782
EcoT38I GRGCYC 2 cut(s) 256, 608
ErhI CCWWGG 3 cut(s) 147, 600, 782
FaeI CATG 7 cut(s) 19, 151, 157, 329, 499, 577, 836
FaqI GGGAC 3 cut(s) 406, 488, 514
FatI CATG 7 cut(s) 15, 147, 153, 325, 495, 573, 832
FauI CCCGC 1 cut(s) 248
FblI GTMKAC 2 cut(s) 311, 321
Fnu4HI GCNGC 8 cut(s) 72, 379, 441, 491, 554, 557, 589, 640
FokI GGATG 5 cut(s) 61, 740, 765, 863, 914
FriOI GRGCYC 2 cut(s) 256, 608
Fsp4HI GCNGC 8 cut(s) 72, 379, 441, 491, 554, 557, 589, 640
FspBI CTAG 4 cut(s) 44, 315, 866, 932
GlaI GCGC 1 cut(s) 354
GluI GCNGC 8 cut(s) 72, 379, 441, 491, 554, 557, 589, 640
GsaI CCCAGC 1 cut(s) 124
HaeIII GGCC 6 cut(s) 5, 38, 81, 219, 234, 545
HgaI GACGC 2 cut(s) 79, 340
HhaI GCGC 1 cut(s) 355
Hin1I GRCGYC 2 cut(s) 177, 332
Hin1II CATG 7 cut(s) 19, 151, 157, 329, 499, 577, 836
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HincII GTYRAC 2 cut(s) 312, 468
HindII GTYRAC 2 cut(s) 312, 468
HindIII AAGCTT 1 cut(s) 700
HinfI GANTC 6 cut(s) 284, 302, 401, 476, 922, 935
Hpy166II GTNNAC 5 cut(s) 312, 322, 408, 468, 830
Hpy188I TCNGA 3 cut(s) 107, 481, 595
Hpy188III TCNNGA 4 cut(s) 85, 94, 196, 247
Hpy8I GTNNAC 5 cut(s) 312, 322, 408, 468, 830
Hpy99I CGWCG 9 cut(s) 62, 95, 173, 179, 182, 313, 334, 448, 466
HpyAV CCTTC 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 5 cut(s) 162, 367, 588, 623, 911
HpyF10VI GCNNNNNNNGC 5 cut(s) 87, 179, 240, 340, 645
HpyF3I CTNAG 1 cut(s) 665
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 2 cut(s) 177, 332
Hsp92II CATG 7 cut(s) 19, 151, 157, 329, 499, 577, 836
HspAI GCGC 1 cut(s) 353
Kpn2I TCCGGA 1 cut(s) 246
Kzo9I GATC 3 cut(s) 336, 345, 853
LmnI GCTCC 4 cut(s) 277, 596, 611, 632
Lsp1109I GCAGC 5 cut(s) 390, 427, 502, 600, 626
LweI GCATC 1 cut(s) 83
MaeI CTAG 4 cut(s) 44, 315, 866, 932
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 871
MalI GATC 3 cut(s) 338, 347, 855
MboI GATC 3 cut(s) 336, 345, 853
MboII GAAGA 8 cut(s) 59, 203, 297, 426, 495, 531, 555, 685
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 3 cut(s) 256, 608, 821
MluCI AATT 3 cut(s) 28, 418, 516
MlyI GAGTC 3 cut(s) 293, 395, 470
MmeI TCCRAC 1 cut(s) 618
MnlI CCTC 9 cut(s) 92, 127, 267, 285, 382, 640, 669, 806, 907
MroI TCCGGA 1 cut(s) 246
MseI TTAA 1 cut(s) 704
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 381
MspR9I CCNGG 4 cut(s) 65, 226, 533, 821
MvaI CCWGG 2 cut(s) 65, 533
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 5 cut(s) 87, 179, 240, 340, 645
NciI CCSGG 2 cut(s) 226, 821
NcoI CCATGG 1 cut(s) 147
NdeII GATC 3 cut(s) 336, 345, 853
NlaIII CATG 7 cut(s) 19, 151, 157, 329, 499, 577, 836
NlaIV GGNNCC 3 cut(s) 224, 607, 818
NmeAIII GCCGAG 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 871
NspI RCATGY 1 cut(s) 836
NspV TTCGAA 1 cut(s) 920
PaeR7I CTCGAG 1 cut(s) 83
PciI ACATGT 1 cut(s) 832
PcsI WCGNNNNNNNCGW 3 cut(s) 90, 458, 506
PfeI GAWTC 3 cut(s) 302, 922, 935
PflMI CCANNNNNTGG 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 8 cut(s) 73, 380, 442, 492, 555, 558, 590, 641
PleI GAGTC 3 cut(s) 292, 395, 470
PpsI GAGTC 3 cut(s) 292, 395, 470
PscI ACATGT 1 cut(s) 832
PshAI GACNNNNGTC 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 63, 531
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 2 cut(s) 63, 531
PspN4I GGNNCC 3 cut(s) 224, 607, 818
PspPI GGNCC 3 cut(s) 217, 222, 228
PsrI GAACNNNNNNTAC 2 cut(s) 672, 704
PsuI RGATCY 1 cut(s) 345
RsaI GTAC 3 cut(s) 140, 431, 749
RsaNI GTAC 3 cut(s) 139, 430, 748
RseI CAYNNNNRTG 1 cut(s) 152
Rsr2I CGGWCCG 1 cut(s) 228
RsrII CGGWCCG 1 cut(s) 228
SalI GTCGAC 1 cut(s) 310
SaqAI TTAA 1 cut(s) 704
SatI GCNGC 8 cut(s) 72, 379, 441, 491, 554, 557, 589, 640
Sau3AI GATC 3 cut(s) 336, 345, 853
Sau96I GGNCC 3 cut(s) 217, 222, 228
SchI GAGTC 3 cut(s) 293, 395, 470
ScrFI CCNGG 4 cut(s) 65, 226, 533, 821
SduI GDGCHC 3 cut(s) 256, 608, 821
SfaNI GCATC 1 cut(s) 83
Sfr274I CTCGAG 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 920
SgrAI CRCCGGYG 1 cut(s) 355
SinI GGWCC 2 cut(s) 222, 228
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 3 cut(s) 28, 418, 516
SsiI CCGC 8 cut(s) 72, 165, 241, 381, 507, 554, 557, 580
SspI AATATT 1 cut(s) 907
SspMI CTAG 4 cut(s) 44, 315, 866, 932
StyD4I CCNGG 4 cut(s) 63, 224, 531, 819
StyI CCWWGG 3 cut(s) 147, 600, 782
TaiI ACGT 1 cut(s) 180
TaqI TCGA 5 cut(s) 84, 93, 311, 920, 938
TasI AATT 3 cut(s) 28, 418, 516
TauI GCSGC 3 cut(s) 74, 556, 559
TfiI GAWTC 3 cut(s) 302, 922, 935
Tru1I TTAA 1 cut(s) 704
Tru9I TTAA 1 cut(s) 704
TscAI CASTG 2 cut(s) 274, 811
TseFI GTSAC 1 cut(s) 871
TseI GCWGC 5 cut(s) 378, 440, 490, 588, 639
Tsp45I GTSAC 1 cut(s) 871
TspDTI ATGAA 3 cut(s) 4, 590, 894
TspGWI ACGGA 2 cut(s) 277, 765
TspRI CASTG 2 cut(s) 274, 811
Van91I CCANNNNNTGG 1 cut(s) 148
VpaK11BI GGWCC 2 cut(s) 222, 228
XapI RAATTY 2 cut(s) 28, 418
XceI RCATGY 1 cut(s) 836
XhoI CTCGAG 1 cut(s) 83
XmiI GTMKAC 2 cut(s) 311, 321
XspI CTAG 4 cut(s) 44, 315, 866, 932
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.