Rroxscaffold_2G00137250
WRKY Family

WRKY transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
75017532 .. 75019017
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137250.1

Sequence Viewer

Length: 951 bp
ATGGCCGTAGATTTCATGGGTTATAGGAATTTCTCGGCCAAGCTAGAAGAAAACGCCGTCGTCCAGGAAGCCGCCTCCGGCCTCGAGAGCGTCGAGAAGCTCATCAGATTGCTGTCCTCCCAGCAGAAGCAGGAGAAGTACCACTCCATGGACATGGACATGGACTGCACCGCCGTCGCCGACGTCGCCGTTTCCAAGTTCAAGAAAGTTATTTCTCTTCTGGGCCGGACCCGGACCGGCCACGCCCGCTTCCGGAGAGCCCCTCTGGCCTTCACTGCTTCTCCACAAGAGTCCGTCAATCCCATAGATTCTTCGTCCACTAGGGTCTACCATGCGACGCCGATCCAGCAGATCGCTCCGCCTGTGGTTATGCCCCACCACGGCGGCGGGATGGAGGCGACTAAAGACTCGTCCACCACTATAAATTTCTCTTCGTACTCTTCTGCTGCCACGACATCGTTTATGTCGTCGTTGACTGGGGACTCGGACAGCAAGCAGCCCATGTCGTCTTCCGCGTTTCAAATTACCAATATGTCCCAGGTCTCTTCGGCCGGAAAGCCGCCGCTTTCTTCTGCTTCCATGAAGCGGAAGTGCAGCTCCGACACCTTGGGCTCCGGCAAATGTGGTGCAAGCTCCTCTGGTCGCTGCCATTGCTCAAAGAAAAGAAAGCTGAGATTGAAGAGGGTAGTGAGAGTTCCAGCTATAAGCTTAAAGATGGCTGATATTCCACCGGATGATTACTCTTGGAGAAAGTACGGACAGAAACCCATCAAGGGTTCTCCACATCCAAGGGGATACTACAAGTGTAGCAGTGTTAGAGGGTGCCCGGCTCGTAAACATGTAGAGAGAGCTTTGGATGATCCATCAATGCTAGTAGTGACCTATGAAGCAGAGCACAATCACTCTCTCAATATTGCAGAGGCTTCGAATCTCATCCTAGAATCGAGTTAG

Protein Analysis

316

Amino Acids

34.36

Weight (kDa)

9.5

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_zn_clust PF10533 195 - 241 6.6e-19 Plant zinc cluster domain
WRKY PF03106 245 - 301 2.8e-26 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011781)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 822
AccB7I CCANNNNNTGG 1 cut(s) 148
AccI GTMKAC 1 cut(s) 327
AccII CGCG 1 cut(s) 515
AccIII TCCGGA 1 cut(s) 252
AclWI GGATC 2 cut(s) 337, 854
AcoI YGGCCR 4 cut(s) 3, 36, 238, 549
AcsI RAATTY 2 cut(s) 28, 424
AcyI GRCGYC 2 cut(s) 183, 338
AfaI GTAC 3 cut(s) 140, 437, 755
AfiI CCNNNNNNNGG 5 cut(s) 148, 252, 380, 585, 773
AflIII ACRYGT 1 cut(s) 838
AgsI TTSAA 3 cut(s) 202, 521, 679
AjnI CCWGG 2 cut(s) 63, 537
AluBI AGCT 8 cut(s) 43, 100, 597, 633, 670, 701, 708, 851
AluI AGCT 8 cut(s) 43, 100, 597, 633, 670, 701, 708, 851
Alw21I GWGCWC 1 cut(s) 897
Alw26I GTCTC 1 cut(s) 547
AlwI GGATC 2 cut(s) 337, 854
Ama87I CYCGRG 1 cut(s) 83
Aor13HI TCCGGA 1 cut(s) 252
AoxI GGCC 7 cut(s) 3, 36, 79, 223, 238, 267, 549
ApeKI GCWGC 4 cut(s) 446, 496, 594, 645
ApoI RAATTY 2 cut(s) 28, 424
AspS9I GGNCC 3 cut(s) 223, 228, 234
AsuC2I CCSGG 2 cut(s) 232, 827
AsuII TTCGAA 1 cut(s) 926
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 2 cut(s) 228, 234
BaeGI GKGCMC 1 cut(s) 827
BanI GGYRCC 1 cut(s) 822
BanII GRGCYC 2 cut(s) 262, 614
BbsI GAAGAC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 897
BbvI GCAGC 4 cut(s) 433, 508, 606, 632
BccI CCATC 4 cut(s) 385, 709, 776, 871
BceAI ACGGC 4 cut(s) 41, 158, 173, 397
BcgI CGANNNNNNTGC 4 cut(s) 157, 191, 906, 940
BciT130I CCWGG 2 cut(s) 65, 539
BciVI GTATCC 1 cut(s) 788
BcnI CCSGG 2 cut(s) 232, 827
BcoDI GTCTC 1 cut(s) 547
BfaI CTAG 4 cut(s) 44, 321, 872, 938
BfuI GTATCC 1 cut(s) 788
BglI GCCNNNNNGGC 1 cut(s) 266
BisI GCNGC 8 cut(s) 72, 385, 447, 497, 560, 563, 595, 646
BlsI GCNGC 8 cut(s) 73, 386, 448, 498, 561, 564, 596, 647
Bme1390I CCNGG 4 cut(s) 65, 232, 539, 827
Bme18I GGWCC 2 cut(s) 228, 234
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 3 cut(s) 223, 228, 234
BmiI GGNNCC 3 cut(s) 230, 613, 824
BmrFI CCNGG 4 cut(s) 65, 232, 539, 827
BmrI ACTGGG 1 cut(s) 486
BmuI ACTGGG 1 cut(s) 486
BpiI GAAGAC 1 cut(s) 501
BplI GAGNNNNNCTC 2 cut(s) 247, 279
Bpu14I TTCGAA 1 cut(s) 926
BpuMI CCSGG 2 cut(s) 232, 827
BsaHI GRCGYC 2 cut(s) 183, 338
BsaI GGTCTC 1 cut(s) 547
BsaJI CCNNGG 5 cut(s) 147, 379, 537, 606, 788
BsaWI WCCGGW 2 cut(s) 252, 730
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 5 cut(s) 148, 252, 380, 585, 773
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 481
Bse3DI GCAATG 1 cut(s) 649
BseAI TCCGGA 1 cut(s) 252
BseBI CCWGG 2 cut(s) 65, 539
BseDI CCNNGG 5 cut(s) 147, 379, 537, 606, 788
BseGI GGATG 5 cut(s) 396, 739, 784, 862, 933
BseLI CCNNNNNNNGG 5 cut(s) 148, 252, 380, 585, 773
BseMI GCAATG 1 cut(s) 649
BseMII CTCAG 1 cut(s) 662
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 1 cut(s) 625
BseSI GKGCMC 1 cut(s) 827
BseX3I CGGCCG 1 cut(s) 549
BseXI GCAGC 4 cut(s) 433, 508, 606, 632
BseYI CCCAGC 1 cut(s) 120
BsgI GTGCAG 2 cut(s) 151, 613
Bsh1236I CGCG 1 cut(s) 515
Bsh1285I CGRYCG 1 cut(s) 552
BshFI GGCC 7 cut(s) 5, 38, 81, 225, 240, 269, 551
BshNI GGYRCC 1 cut(s) 822
BsiEI CGRYCG 1 cut(s) 552
BsiHKAI GWGCWC 1 cut(s) 897
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 9 cut(s) 78, 226, 232, 237, 253, 552, 615, 731, 827
BslFI GGGAC 2 cut(s) 494, 520
BslI CCNNNNNNNGG 5 cut(s) 148, 252, 380, 585, 773
BsmAI GTCTC 1 cut(s) 547
BsmFI GGGAC 2 cut(s) 494, 520
BsnI GGCC 7 cut(s) 5, 38, 81, 225, 240, 269, 551
Bso31I GGTCTC 1 cut(s) 547
BsoBI CYCGRG 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 926
Bsp1286I GDGCHC 4 cut(s) 262, 614, 827, 897
Bsp13I TCCGGA 1 cut(s) 252
Bsp143I GATC 3 cut(s) 342, 351, 859
Bsp19I CCATGG 1 cut(s) 147
BspANI GGCC 7 cut(s) 5, 38, 81, 225, 240, 269, 551
BspCNI CTCAG 1 cut(s) 663
BspEI TCCGGA 1 cut(s) 252
BspFNI CGCG 1 cut(s) 515
BspLI GGNNCC 3 cut(s) 230, 613, 824
BspPI GGATC 2 cut(s) 337, 854
BspT104I TTCGAA 1 cut(s) 926
BspT107I GGYRCC 1 cut(s) 822
BspTNI GGTCTC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 649
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 1 cut(s) 481
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 5 cut(s) 147, 379, 537, 606, 788
BssMI GATC 3 cut(s) 342, 351, 859
BssNI GRCGYC 2 cut(s) 183, 338
BssT1I CCWWGG 3 cut(s) 147, 606, 788
Bst2UI CCWGG 2 cut(s) 65, 539
Bst6I CTCTTC 5 cut(s) 222, 436, 445, 550, 674
BstACI GRCGYC 2 cut(s) 183, 338
BstBI TTCGAA 1 cut(s) 926
BstC8I GCNNGC 3 cut(s) 247, 494, 631
BstDEI CTNAG 1 cut(s) 671
BstDSI CCRYGG 2 cut(s) 147, 379
BstF5I GGATG 5 cut(s) 396, 739, 784, 862, 933
BstFNI CGCG 1 cut(s) 515
BstKTI GATC 3 cut(s) 345, 354, 862
BstMAI GTCTC 1 cut(s) 547
BstMBI GATC 3 cut(s) 342, 351, 859
BstMCI CGRYCG 1 cut(s) 552
BstMWI GCNNNNNNNGC 7 cut(s) 87, 185, 246, 266, 275, 346, 651
BstNI CCWGG 2 cut(s) 65, 539
BstNSI RCATGY 1 cut(s) 842
BstSCI CCNGG 4 cut(s) 63, 230, 537, 825
BstSLI GKGCMC 1 cut(s) 827
BstUI CGCG 1 cut(s) 515
BstV1I GCAGC 4 cut(s) 433, 508, 606, 632
BstV2I GAAGAC 1 cut(s) 501
BstXI CCANNNNNNTGG 1 cut(s) 154
BstZI CGGCCG 1 cut(s) 549
BsuI GTATCC 1 cut(s) 788
BsuRI GGCC 7 cut(s) 5, 38, 81, 225, 240, 269, 551
BtgI CCRYGG 2 cut(s) 147, 379
BtsCI GGATG 5 cut(s) 396, 739, 784, 862, 933
BtsI GCAGTG 2 cut(s) 273, 817
BtsIMutI CAGTG 2 cut(s) 273, 817
Cac8I GCNNGC 3 cut(s) 247, 494, 631
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 3 cut(s) 223, 228, 234
CpoI CGGWCCG 1 cut(s) 234
CseI GACGC 2 cut(s) 79, 346
Csp6I GTAC 3 cut(s) 139, 436, 754
CspI CGGWCCG 1 cut(s) 234
CviAII CATG 8 cut(s) 16, 148, 154, 160, 332, 502, 580, 839
CviQI GTAC 3 cut(s) 139, 436, 754
DdeI CTNAG 1 cut(s) 671
DpnI GATC 3 cut(s) 344, 353, 861
DpnII GATC 3 cut(s) 342, 351, 859
EaeI YGGCCR 4 cut(s) 3, 36, 238, 549
EagI CGGCCG 1 cut(s) 549
Eam1104I CTCTTC 5 cut(s) 222, 436, 445, 550, 674
EarI CTCTTC 5 cut(s) 222, 436, 445, 550, 674
EciI GGCGGA 1 cut(s) 348
EclXI CGGCCG 1 cut(s) 549
Eco130I CCWWGG 3 cut(s) 147, 606, 788
Eco24I GRGCYC 2 cut(s) 262, 614
Eco31I GGTCTC 1 cut(s) 547
Eco47I GGWCC 2 cut(s) 228, 234
Eco52I CGGCCG 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 63, 537
EcoT14I CCWWGG 3 cut(s) 147, 606, 788
EcoT38I GRGCYC 2 cut(s) 262, 614
ErhI CCWWGG 3 cut(s) 147, 606, 788
FaeI CATG 8 cut(s) 19, 151, 157, 163, 335, 505, 583, 842
FaqI GGGAC 2 cut(s) 494, 520
FatI CATG 8 cut(s) 15, 147, 153, 159, 331, 501, 579, 838
FauI CCCGC 2 cut(s) 254, 380
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 8 cut(s) 72, 385, 447, 497, 560, 563, 595, 646
FokI GGATG 5 cut(s) 403, 746, 771, 869, 920
FriOI GRGCYC 2 cut(s) 262, 614
Fsp4HI GCNGC 8 cut(s) 72, 385, 447, 497, 560, 563, 595, 646
FspBI CTAG 4 cut(s) 44, 321, 872, 938
GluI GCNGC 8 cut(s) 72, 385, 447, 497, 560, 563, 595, 646
GsaI CCCAGC 1 cut(s) 124
HaeIII GGCC 7 cut(s) 5, 38, 81, 225, 240, 269, 551
HapII CCGG 9 cut(s) 78, 226, 232, 237, 253, 552, 615, 731, 827
HgaI GACGC 2 cut(s) 79, 346
Hin1I GRCGYC 2 cut(s) 183, 338
Hin1II CATG 8 cut(s) 19, 151, 157, 163, 335, 505, 583, 842
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HindIII AAGCTT 1 cut(s) 706
HinfI GANTC 6 cut(s) 290, 308, 407, 482, 928, 941
HpaII CCGG 9 cut(s) 78, 226, 232, 237, 253, 552, 615, 731, 827
Hpy166II GTNNAC 5 cut(s) 318, 328, 414, 474, 836
Hpy188I TCNGA 3 cut(s) 107, 487, 601
Hpy188III TCNNGA 4 cut(s) 85, 94, 202, 253
Hpy8I GTNNAC 5 cut(s) 318, 328, 414, 474, 836
Hpy99I CGWCG 7 cut(s) 62, 95, 179, 185, 188, 340, 472
HpyAV CCTTC 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 4 cut(s) 168, 594, 629, 917
HpyF10VI GCNNNNNNNGC 7 cut(s) 87, 185, 246, 266, 275, 346, 651
HpyF3I CTNAG 1 cut(s) 671
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 2 cut(s) 183, 338
Hsp92II CATG 8 cut(s) 19, 151, 157, 163, 335, 505, 583, 842
Kpn2I TCCGGA 1 cut(s) 252
Kzo9I GATC 3 cut(s) 342, 351, 859
LmnI GCTCC 4 cut(s) 361, 602, 617, 638
Lsp1109I GCAGC 4 cut(s) 433, 508, 606, 632
MaeI CTAG 4 cut(s) 44, 321, 872, 938
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 877
MalI GATC 3 cut(s) 344, 353, 861
MboI GATC 3 cut(s) 342, 351, 859
MboII GAAGA 9 cut(s) 59, 209, 303, 423, 432, 501, 537, 561, 691
MhlI GDGCHC 4 cut(s) 262, 614, 827, 897
MluCI AATT 3 cut(s) 28, 424, 522
MlyI GAGTC 3 cut(s) 299, 401, 476
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 9 cut(s) 85, 92, 127, 273, 388, 646, 675, 812, 913
MroI TCCGGA 1 cut(s) 252
MseI TTAA 1 cut(s) 710
MslI CAYNNNNRTG 2 cut(s) 152, 158
MspI CCGG 9 cut(s) 78, 226, 232, 237, 253, 552, 615, 731, 827
MspR9I CCNGG 4 cut(s) 65, 232, 539, 827
MvaI CCWGG 2 cut(s) 65, 539
MvnI CGCG 1 cut(s) 515
MwoI GCNNNNNNNGC 7 cut(s) 87, 185, 246, 266, 275, 346, 651
NciI CCSGG 2 cut(s) 232, 827
NcoI CCATGG 1 cut(s) 147
NdeII GATC 3 cut(s) 342, 351, 859
NlaIII CATG 8 cut(s) 19, 151, 157, 163, 335, 505, 583, 842
NlaIV GGNNCC 3 cut(s) 230, 613, 824
NmeAIII GCCGAG 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 877
NspI RCATGY 1 cut(s) 842
NspV TTCGAA 1 cut(s) 926
PaeR7I CTCGAG 1 cut(s) 83
PciI ACATGT 1 cut(s) 838
PcsI WCGNNNNNNNCGW 3 cut(s) 90, 464, 512
PfeI GAWTC 3 cut(s) 308, 928, 941
PflMI CCANNNNNTGG 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 63
PkrI GCNGC 8 cut(s) 73, 386, 448, 498, 561, 564, 596, 647
PleI GAGTC 3 cut(s) 298, 401, 476
PpsI GAGTC 3 cut(s) 298, 401, 476
PscI ACATGT 1 cut(s) 838
Psp6I CCWGG 2 cut(s) 63, 537
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 2 cut(s) 63, 537
PspN4I GGNNCC 3 cut(s) 230, 613, 824
PspPI GGNCC 3 cut(s) 223, 228, 234
PsrI GAACNNNNNNTAC 2 cut(s) 678, 710
RsaI GTAC 3 cut(s) 140, 437, 755
RsaNI GTAC 3 cut(s) 139, 436, 754
RseI CAYNNNNRTG 2 cut(s) 152, 158
Rsr2I CGGWCCG 1 cut(s) 234
RsrII CGGWCCG 1 cut(s) 234
SaqAI TTAA 1 cut(s) 710
SatI GCNGC 8 cut(s) 72, 385, 447, 497, 560, 563, 595, 646
Sau3AI GATC 3 cut(s) 342, 351, 859
Sau96I GGNCC 3 cut(s) 223, 228, 234
SchI GAGTC 3 cut(s) 299, 401, 476
ScrFI CCNGG 4 cut(s) 65, 232, 539, 827
SduI GDGCHC 4 cut(s) 262, 614, 827, 897
Sfr274I CTCGAG 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 926
SinI GGWCC 2 cut(s) 228, 234
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 2 cut(s) 152, 158
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 3 cut(s) 28, 424, 522
SspI AATATT 1 cut(s) 913
SspMI CTAG 4 cut(s) 44, 321, 872, 938
StyD4I CCNGG 4 cut(s) 63, 230, 537, 825
StyI CCWWGG 3 cut(s) 147, 606, 788
TaiI ACGT 1 cut(s) 186
TaqI TCGA 4 cut(s) 84, 93, 926, 944
TasI AATT 3 cut(s) 28, 424, 522
TauI GCSGC 4 cut(s) 74, 387, 562, 565
TfiI GAWTC 3 cut(s) 308, 928, 941
Tru1I TTAA 1 cut(s) 710
Tru9I TTAA 1 cut(s) 710
TscAI CASTG 2 cut(s) 280, 817
TseFI GTSAC 1 cut(s) 877
TseI GCWGC 4 cut(s) 446, 496, 594, 645
Tsp45I GTSAC 1 cut(s) 877
TspDTI ATGAA 3 cut(s) 4, 596, 900
TspGWI ACGGA 2 cut(s) 283, 771
TspRI CASTG 2 cut(s) 280, 817
Van91I CCANNNNNTGG 1 cut(s) 148
VpaK11BI GGWCC 2 cut(s) 228, 234
XapI RAATTY 2 cut(s) 28, 424
XceI RCATGY 1 cut(s) 842
XhoI CTCGAG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 4 cut(s) 44, 321, 872, 938
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.