Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011781

Physical Location & Seq

Genomic Coordinates Reverse (-)

26365198 .. 26366819

Gene Structure 1622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1287300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCCGTTGATTTCATGGGTTACAGAAACACCAGCAGCAGCAGCAGCTTCTCCGCCAAGTTGGAAGAGAACGCCGTGCAGGAAGCGGCTTCCGGCCTCGAGAGCGTCGAGAAGCTTATCCGGTTGCTGTCGCAGGCGCAGCAGAACCAGCACCAAGAGAAATATCCGTCGACGGCTATGGACATGGATTGCAGAGCCGTCGCCGACGTCGCCGTTTCCAAGTTCAAGAAGGTCATTTCTCTTCTCGGTCGGACCCGGACCGGCCACGCGCGGTTCCGGCGAGCCCCTTTGACTGTGAATTCCGGGTCGTCTTTCCAACCCCAATACCAGAGCCATAGCCAAGACATCGTCGTCAAGCAAGCTCCTTTAGAGTCCACCAAAGTTTACCATGCGACGCCGATCCAGCAGATCCCGCCTTCTCATCACCATCACCACAGTATGGTGCTCGAGAGCACTATGGACTCCTCTAACACTATGAATTTCTCGTATTCGGCTGCGACGTCGTTTATGTCGTCGTTGACCGGCGACTCCGATAGCAAGCAACCAATGTCGTCTTCGGCTTTTCAAATTACCAATTTATCCCAGGTTTCCTCAGCCGGAAAGCCGCCGCTTTCCTCCACCTCGCTGAAGCGGAAGTGCAGCTCCGAGAACTTGGGCTCTGGGAAGTGCGGTGCTGGATCCTCCGGCCGCTGCCATTGCTCCAAGAAGAGAAAGCTGAGACAGAAGAGGGTTGTAAGAGTTCCAGCTATAAGCTTGAAGATGGCGGATATCCCACCCGACGATTACTCCTGGAGAAAGTACGGACAGAAACCCATCAAGGGATCTCCACATCCAAGGGGATACTACAAATGCAGCAGCGTAAGAGGATGCCCGGCTCGAAAACACGTAGAGAGAGCTCTGGACGATCCGGCAATGCTAGTGGTTACCTACGAAGGCGACCACAATCACTCTCTCTCAGTTGCAGATACCTCCAATCTCATTCTAGAATCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

332

Amino Acids

36.24

Weight (kDa)

9.54

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	210 - 256	5.1e-19	Plant zinc cluster domain
WRKY	PF03106	260 - 316	1.3e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23320 AT2G23320
fragaria_vesca	FvH4_1g16480 FvH4_1g16480
malus_domestica	MD02G1177500.v1.1 MD15G1287300.v1.1
prunus_persica	Prupe.6G230600_v2.0.a1
pyrus_communis	pycom02g14340 pycom15g25080
rosa_chinensis	RchiOBHm_Chr2g0106361
rosa_laevigata	RLG00000017492
rosa_multiflora	Rmu_sc0016473.1_g000001
rosa_roxburghii	Rroxscaffold_2G00137250
rosa_rugosa	Rorug02G0135000
rosa_samantha	Rh2AG186100 Rh2BG196300 Rh2CG191100 Rh2DG192200
rosa_wichuraiana	Rw2G014510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AatII	GACGTC	2 cut(s)	210, 503
AccB7I	CCANNNNNTGG	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	170
AccII	CGCG	2 cut(s)	269, 271
AclWI	GGATC	6 cut(s)	394, 403, 672, 685, 829, 899
AcoI	YGGCCR	3 cut(s)	3, 262, 685
AcsI	RAATTY	2 cut(s)	298, 478
AcuI	CTGAAG	1 cut(s)	647
AcyI	GRCGYC	3 cut(s)	207, 395, 500
AfaI	GTAC	1 cut(s)	800
AfiI	CCNNNNNNNGG	2 cut(s)	439, 818
AflIII	ACRYGT	1 cut(s)	883
AgsI	TTSAA	3 cut(s)	226, 566, 757
AjnI	CCWGG	2 cut(s)	582, 788
AjuI	GAANNNNNNNTTGG	2 cut(s)	538, 570
AluBI	AGCT	8 cut(s)	48, 115, 362, 642, 715, 746, 753, 896
AluI	AGCT	8 cut(s)	48, 115, 362, 642, 715, 746, 753, 896
Alw21I	GWGCWC	3 cut(s)	447, 455, 898
Alw26I	GTCTC	1 cut(s)	712
AlwI	GGATC	6 cut(s)	394, 403, 672, 685, 829, 899
Ama87I	CYCGRG	2 cut(s)	98, 446
AoxI	GGCC	4 cut(s)	3, 94, 262, 685
ApoI	RAATTY	2 cut(s)	298, 478
AspLEI	GCGC	2 cut(s)	139, 271
AspS9I	GGNCC	2 cut(s)	252, 258
AsuC2I	CCSGG	3 cut(s)	256, 304, 872
AsuHPI	GGTGA	2 cut(s)	416, 422
AvaI	CYCGRG	2 cut(s)	98, 446
AvaII	GGWCC	2 cut(s)	252, 258
BamHI	GGATCC	1 cut(s)	677
BanII	GRGCYC	3 cut(s)	286, 659, 898
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	3 cut(s)	447, 455, 898
BbvCI	CCTCAGC	1 cut(s)	592
BccI	CCATC	3 cut(s)	435, 754, 821
BceAI	ACGGC	4 cut(s)	59, 182, 189, 197
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	2 cut(s)	584, 790
BciVI	GTATCC	1 cut(s)	833
BcnI	CCSGG	3 cut(s)	256, 304, 872
BcoDI	GTCTC	1 cut(s)	712
BfaI	CTAG	2 cut(s)	917, 983
BfuI	GTATCC	1 cut(s)	833
Bme1390I	CCNGG	5 cut(s)	256, 304, 584, 790, 872
Bme18I	GGWCC	2 cut(s)	252, 258
BmeT110I	CYCGRG	2 cut(s)	98, 446
BmgT120I	GGNCC	2 cut(s)	252, 258
BmiI	GGNNCC	3 cut(s)	254, 275, 679
BmrFI	CCNGG	5 cut(s)	256, 304, 584, 790, 872
BmsI	GCATC	1 cut(s)	857
BpiI	GAAGAC	1 cut(s)	546
BpmI	CTGGAG	1 cut(s)	811
Bpu10I	CCTNAGC	1 cut(s)	592
BpuMI	CCSGG	3 cut(s)	256, 304, 872
BsaAI	YACGTR	1 cut(s)	886
BsaHI	GRCGYC	3 cut(s)	207, 395, 500
BsaJI	CCNNGG	2 cut(s)	582, 833
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	770, 800
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 818
Bse118I	RCCGGY	2 cut(s)	260, 521
Bse3DI	GCAATG	2 cut(s)	694, 918
BseBI	CCWGG	2 cut(s)	584, 790
BseDI	CCNNGG	2 cut(s)	582, 833
BseGI	GGATG	2 cut(s)	829, 872
BseLI	CCNNNNNNNGG	2 cut(s)	439, 818
BseMI	GCAATG	2 cut(s)	694, 918
BseMII	CTCAG	3 cut(s)	606, 707, 969
BseRI	GAGGAG	1 cut(s)	454
BseX3I	CGGCCG	1 cut(s)	685
BsgI	GTGCAG	2 cut(s)	98, 658
Bsh1236I	CGCG	2 cut(s)	269, 271
Bsh1285I	CGRYCG	2 cut(s)	250, 688
BshFI	GGCC	4 cut(s)	5, 96, 264, 687
BsiEI	CGRYCG	2 cut(s)	250, 688
BsiHKAI	GWGCWC	3 cut(s)	447, 455, 898
BsiHKCI	CYCGRG	2 cut(s)	98, 446
BslI	CCNNNNNNNGG	2 cut(s)	439, 818
BsmAI	GTCTC	1 cut(s)	712
BsnI	GGCC	4 cut(s)	5, 96, 264, 687
BsoBI	CYCGRG	2 cut(s)	98, 446
Bsp1286I	GDGCHC	5 cut(s)	286, 447, 455, 659, 898
Bsp143I	GATC	5 cut(s)	399, 408, 677, 821, 904
BspANI	GGCC	4 cut(s)	5, 96, 264, 687
BspCNI	CTCAG	3 cut(s)	605, 708, 968
BspFNI	CGCG	2 cut(s)	269, 271
BspLI	GGNNCC	3 cut(s)	254, 275, 679
BspPI	GGATC	6 cut(s)	394, 403, 672, 685, 829, 899
BsrDI	GCAATG	2 cut(s)	694, 918
BsrFI	RCCGGY	2 cut(s)	260, 521
BssAI	RCCGGY	2 cut(s)	260, 521
BssECI	CCNNGG	2 cut(s)	582, 833
BssMI	GATC	5 cut(s)	399, 408, 677, 821, 904
BssNI	GRCGYC	3 cut(s)	207, 395, 500
BssT1I	CCWWGG	1 cut(s)	833
Bst2UI	CCWGG	2 cut(s)	584, 790
Bst4CI	ACNGT	2 cut(s)	295, 437
Bst6I	CTCTTC	4 cut(s)	60, 246, 701, 719
BstACI	GRCGYC	3 cut(s)	207, 395, 500
BstBAI	YACGTR	1 cut(s)	886
BstC8I	GCNNGC	4 cut(s)	135, 282, 360, 539
BstDEI	CTNAG	4 cut(s)	592, 716, 955, 993
BstEII	GGTNACC	1 cut(s)	922
BstF5I	GGATG	2 cut(s)	829, 872
BstFNI	CGCG	2 cut(s)	269, 271
BstHHI	GCGC	2 cut(s)	139, 271
BstKTI	GATC	5 cut(s)	402, 411, 680, 824, 907
BstMAI	GTCTC	1 cut(s)	712
BstMBI	GATC	5 cut(s)	399, 408, 677, 821, 904
BstMCI	CGRYCG	2 cut(s)	250, 688
BstNI	CCWGG	2 cut(s)	584, 790
BstPI	GGTNACC	1 cut(s)	922
BstSCI	CCNGG	5 cut(s)	254, 302, 582, 788, 870
BstUI	CGCG	2 cut(s)	269, 271
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	3 cut(s)	408, 677, 821
BstYI	RGATCY	3 cut(s)	408, 677, 821
BstZI	CGGCCG	1 cut(s)	685
BsuI	GTATCC	1 cut(s)	833
BsuRI	GGCC	4 cut(s)	5, 96, 264, 687
BtsCI	GGATG	2 cut(s)	829, 872
Cac8I	GCNNGC	4 cut(s)	135, 282, 360, 539
CfoI	GCGC	2 cut(s)	139, 271
Cfr10I	RCCGGY	2 cut(s)	260, 521
Cfr13I	GGNCC	2 cut(s)	252, 258
CpoI	CGGWCCG	1 cut(s)	258
CseI	GACGC	2 cut(s)	94, 403
Csp6I	GTAC	1 cut(s)	799
CspCI	CAANNNNNGTGG	2 cut(s)	900, 935
CspI	CGGWCCG	1 cut(s)	258
CviAII	CATG	3 cut(s)	16, 184, 389
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	4 cut(s)	592, 716, 955, 993
DpnI	GATC	5 cut(s)	401, 410, 679, 823, 906
DpnII	GATC	5 cut(s)	399, 408, 677, 821, 904
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
EaeI	YGGCCR	3 cut(s)	3, 262, 685
EagI	CGGCCG	1 cut(s)	685
Eam1104I	CTCTTC	4 cut(s)	60, 246, 701, 719
EarI	CTCTTC	4 cut(s)	60, 246, 701, 719
EciI	GGCGGA	2 cut(s)	43, 779
Ecl136II	GAGCTC	1 cut(s)	896
EclXI	CGGCCG	1 cut(s)	685
Eco130I	CCWWGG	1 cut(s)	833
Eco24I	GRGCYC	3 cut(s)	286, 659, 898
Eco32I	GATATC	1 cut(s)	769
Eco47I	GGWCC	2 cut(s)	252, 258
Eco52I	CGGCCG	1 cut(s)	685
Eco53kI	GAGCTC	1 cut(s)	896
Eco57I	CTGAAG	1 cut(s)	647
Eco88I	CYCGRG	2 cut(s)	98, 446
Eco91I	GGTNACC	1 cut(s)	922
EcoICRI	GAGCTC	1 cut(s)	896
EcoO65I	GGTNACC	1 cut(s)	922
EcoRI	GAATTC	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	582, 788
EcoRV	GATATC	1 cut(s)	769
EcoT14I	CCWWGG	1 cut(s)	833
EcoT38I	GRGCYC	3 cut(s)	286, 659, 898
ErhI	CCWWGG	1 cut(s)	833
FaeI	CATG	3 cut(s)	19, 187, 392
FatI	CATG	3 cut(s)	15, 183, 388
FauI	CCCGC	1 cut(s)	420
FblI	GTMKAC	1 cut(s)	170
FokI	GGATG	2 cut(s)	816, 879
FriOI	GRGCYC	3 cut(s)	286, 659, 898
FspBI	CTAG	2 cut(s)	917, 983
GlaI	GCGC	2 cut(s)	138, 270
GsuI	CTGGAG	1 cut(s)	811
HaeIII	GGCC	4 cut(s)	5, 96, 264, 687
HgaI	GACGC	2 cut(s)	94, 403
HhaI	GCGC	2 cut(s)	139, 271
Hin1I	GRCGYC	3 cut(s)	207, 395, 500
Hin1II	CATG	3 cut(s)	19, 187, 392
Hin6I	GCGC	2 cut(s)	137, 269
HinP1I	GCGC	2 cut(s)	137, 269
HincII	GTYRAC	2 cut(s)	171, 519
HindII	GTYRAC	2 cut(s)	171, 519
HindIII	AAGCTT	2 cut(s)	113, 751
HinfI	GANTC	4 cut(s)	371, 461, 527, 986
HphI	GGTGA	2 cut(s)	416, 422
Hpy166II	GTNNAC	4 cut(s)	171, 375, 385, 519
Hpy188I	TCNGA	3 cut(s)	252, 532, 646
Hpy188III	TCNNGA	6 cut(s)	100, 109, 226, 448, 899, 983
Hpy8I	GTNNAC	4 cut(s)	171, 375, 385, 519
HpyAV	CCTTC	3 cut(s)	223, 426, 926
HpyCH4III	ACNGT	2 cut(s)	295, 437
HpyCH4IV	ACGT	3 cut(s)	207, 500, 885
HpyCH4V	TGCA	5 cut(s)	79, 192, 639, 852, 962
HpyF3I	CTNAG	4 cut(s)	592, 716, 955, 993
HpySE526I	ACGT	3 cut(s)	207, 500, 885
Hsp92I	GRCGYC	3 cut(s)	207, 395, 500
Hsp92II	CATG	3 cut(s)	19, 187, 392
HspAI	GCGC	2 cut(s)	137, 269
Kzo9I	GATC	5 cut(s)	399, 408, 677, 821, 904
LmnI	GCTCC	3 cut(s)	367, 647, 704
LweI	GCATC	1 cut(s)	857
MaeI	CTAG	2 cut(s)	917, 983
MaeII	ACGT	3 cut(s)	207, 500, 885
MaeIII	GTNAC	2 cut(s)	20, 922
MalI	GATC	5 cut(s)	401, 410, 679, 823, 906
MboI	GATC	5 cut(s)	399, 408, 677, 821, 904
MboII	GAAGA	7 cut(s)	77, 233, 546, 718, 736, 769, 981
MflI	RGATCY	3 cut(s)	408, 677, 821
MhlI	GDGCHC	5 cut(s)	286, 447, 455, 659, 898
MluCI	AATT	4 cut(s)	298, 478, 567, 574
MlyI	GAGTC	3 cut(s)	380, 455, 521
MmeI	TCCRAC	3 cut(s)	42, 230, 340
MnlI	CCTC	9 cut(s)	107, 475, 601, 625, 631, 691, 720, 857, 979
MspA1I	CMGCKG	1 cut(s)	690
MspR9I	CCNGG	5 cut(s)	256, 304, 584, 790, 872
MvaI	CCWGG	2 cut(s)	584, 790
MvnI	CGCG	2 cut(s)	269, 271
NciI	CCSGG	3 cut(s)	256, 304, 872
NdeII	GATC	5 cut(s)	399, 408, 677, 821, 904
NlaIII	CATG	3 cut(s)	19, 187, 392
NlaIV	GGNNCC	3 cut(s)	254, 275, 679
PaeR7I	CTCGAG	2 cut(s)	98, 446
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 497, 509
PfeI	GAWTC	1 cut(s)	986
PflFI	GACNNNGTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	439
PfoI	TCCNGGA	1 cut(s)	788
PleI	GAGTC	3 cut(s)	379, 455, 521
PpsI	GAGTC	3 cut(s)	379, 455, 521
Ppu21I	YACGTR	1 cut(s)	886
Psp124BI	GAGCTC	1 cut(s)	898
Psp6I	CCWGG	2 cut(s)	582, 788
PspEI	GGTNACC	1 cut(s)	922
PspGI	CCWGG	2 cut(s)	582, 788
PspN4I	GGNNCC	3 cut(s)	254, 275, 679
PspPI	GGNCC	2 cut(s)	252, 258
PsuI	RGATCY	3 cut(s)	408, 677, 821
PsyI	GACNNNGTC	1 cut(s)	347
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
Rsr2I	CGGWCCG	1 cut(s)	258
RsrII	CGGWCCG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	898
SalI	GTCGAC	1 cut(s)	169
Sau3AI	GATC	5 cut(s)	399, 408, 677, 821, 904
Sau96I	GGNCC	2 cut(s)	252, 258
SchI	GAGTC	3 cut(s)	380, 455, 521
ScrFI	CCNGG	5 cut(s)	256, 304, 584, 790, 872
SduI	GDGCHC	5 cut(s)	286, 447, 455, 659, 898
SfaNI	GCATC	1 cut(s)	857
Sfr274I	CTCGAG	2 cut(s)	98, 446
SgrDI	CGTCGACG	1 cut(s)	169
SinI	GGWCC	2 cut(s)	252, 258
SlaI	CTCGAG	2 cut(s)	98, 446
SmlI	CTYRAG	2 cut(s)	98, 446
SmoI	CTYRAG	2 cut(s)	98, 446
Sse9I	AATT	4 cut(s)	298, 478, 567, 574
SspMI	CTAG	2 cut(s)	917, 983
SstI	GAGCTC	1 cut(s)	898
StyD4I	CCNGG	5 cut(s)	254, 302, 582, 788, 870
StyI	CCWWGG	1 cut(s)	833
TaaI	ACNGT	2 cut(s)	295, 437
TaiI	ACGT	3 cut(s)	210, 503, 888
TaqI	TCGA	5 cut(s)	99, 108, 170, 447, 877
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	4 cut(s)	298, 478, 567, 574
TauI	GCSGC	4 cut(s)	89, 607, 610, 690
TfiI	GAWTC	1 cut(s)	986
TspDTI	ATGAA	2 cut(s)	4, 491
TspGWI	ACGGA	2 cut(s)	156, 816
Tth111I	GACNNNGTC	1 cut(s)	347
Van91I	CCANNNNNTGG	1 cut(s)	439
VpaK11BI	GGWCC	2 cut(s)	252, 258
XapI	RAATTY	2 cut(s)	298, 478
XbaI	TCTAGA	1 cut(s)	982
XhoI	CTCGAG	2 cut(s)	98, 446
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	2 cut(s)	917, 983
ZraI	GACGTC	2 cut(s)	208, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.