AT2G24100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012165
Physical Location & Seq
Forward (+)
10244745 .. 10246994
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24100.1

Sequence Viewer

Length: 1401 bp
ATGGTGGAGATGATGAGATCAGAGAATCATCTAAGACAAGCTTCGAAGCATCGGAACAACAATTTTCCGGTGAAGTTAGAGATCATTGAAGATTCTCTTGAAGAAGAACACGCTCCTCTCAACAAACGATCCAAGCTATGGAGCAATGGAACAAGTGTCTCTAAGTTTAGTCTACTTGAAGAGCCAAGTCCTTTGGGGTTGAGTTTAAAAAAGAGCCCATCTTTTCAAGAACTGATTGAGATGAAACTTTCTCAAAGTGGTGATGACTCAAATTCGGTTAAGAAAGAAAGTTTTGGTTTTGGTGGTGTAGGAACCGTTGAGAAGCTTAAAGCTTCTAACTTTCCTGCTACTATTCTCAGGATTGGTCAATGGGAGTATAAGTCAAGGTATGAAGGTGATTTGGTGGCGAAATGTTACTTTGCAAAACATAAACTTGTGTGGGAAGTGTTGGAACAAGGTCTTAAGAGCAAGATTGAGATTCAGTGGTCTGATATTATGGCTTTGAAGGCTAATTTGCCAGAGGATGAACCTGGAACCCTGACTATTGTGCTGGCTAGGCGGCCATTGTTTTTCAGAGAAACTAATCCGCAGCCTAGAAAACATACTTTGTGGCAGGCGACATCGGATTTTACTGATGGTCAAGCTAGCATGAACAGGCAACATTTTCTGCAGTGTCCCCCAGGGATTATGAACAAACATTTTGAGAAGCTTGTTCAATGTGATCATCGCTTGTTCTGTCTAAGCCGGCAGCCAGAGATAAACTTGGCCGCACCGTTCTTTGATTCACGACTATCTATATTTGAGGATCCCTCAGTGTCTGGATCTCATAATATTGCATCTCCTGTTGGGGCTCAGTCATCATCAGAACATGTGTCTCTATCTCATGACGCACTATCGCCTAGCTCAGTGATGGATGCTCGTGCAATCGAAGGAGTTGGTGGTTCCATTGATTCGAGGAATACAAACGGTTGGAGTCAGATAAAAATGCCTGGACTACACCAATCTATCTCGATGAACGATTTCCTTACGTTTTTGTCAGATCAAGCTTGTGAAAACAACCAAGAGTTTGAGGAAATGAAACAGTTACTGCTAAGTGACAACACTCAAACCGATCCATCTGATGAGAAGTCTGTCATGTCAAAGGTGAATTCTTTCTGCAACCTCTTGCAATCTGCTGCAAACTCACAGCTCAATATCGAAACTGCTGATACCGAAAGAGTTGTTGGGGTCGATAACAATAGACACATGCCCGAAGGAGGCAAAAGAGTTGTTGACCCTGCTTCAAGCAGCAAGCCACTACAAGGGATGTCAAGGAAAGACTCATTCAGTGATTTGCTGGTGCACCTTCCTCGAATCACATCACTCCCAAAGTTCTTGTTCAACATTTCAGAAGAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

466

Amino Acids

52.21

Weight (kDa)

5.83

Isoelectric Point (pI)

64.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_TRF2_HOY1 PF24818 113 - 231 7e-61 TRF2/HOY1 PH-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24100 AT4G30780
fragaria_vesca FvH4_4g10180
malus_domestica MD00G1164000.v1.1 MD16G1259500.v1.1
prunus_persica Prupe.1G102300_v2.0.a1
pyrus_communis pycom13g28620 pycom16g22740
rosa_chinensis RchiOBHm_Chr4g0405561
rosa_laevigata RLG00000008836
rosa_multiflora Rmu_sc0005023.1_g000013
rosa_roxburghii Rroxscaffold_5G00350070
rosa_rugosa Rorug04G0060600 Rorug04G0060600
rosa_samantha Rh4AG132500 Rh4BG127400 Rh4CG140200 Rh4DG126800
rosa_wichuraiana Rw4G010730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 138
AccI GTMKAC 1 cut(s) 172
AciI CCGC 3 cut(s) 559, 587, 768
AclWI GGATC 5 cut(s) 123, 800, 813, 829, 1106
AcoI YGGCCR 2 cut(s) 560, 765
AcsI RAATTY 2 cut(s) 271, 1147
AfiI CCNNNNNNNGG 3 cut(s) 138, 1256, 1301
AflII CTTAAG 1 cut(s) 461
AflIII ACRYGT 1 cut(s) 868
AgsI TTSAA 8 cut(s) 89, 101, 179, 227, 505, 716, 1284, 1381
AjnI CCWGG 3 cut(s) 529, 679, 988
AjuI GAANNNNNNNTTGG 2 cut(s) 1206, 1238
AluBI AGCT 9 cut(s) 41, 136, 325, 332, 644, 709, 903, 1046, 1189
AluI AGCT 9 cut(s) 41, 136, 325, 332, 644, 709, 903, 1046, 1189
Alw21I GWGCWC 1 cut(s) 1344
Alw26I GTCTC 2 cut(s) 163, 879
Alw44I GTGCAC 1 cut(s) 1340
AlwI GGATC 5 cut(s) 123, 800, 813, 829, 1106
AlwNI CAGNNNCTG 2 cut(s) 818, 1087
AoxI GGCC 2 cut(s) 560, 765
ApaLI GTGCAC 1 cut(s) 1340
ApeKI GCWGC 4 cut(s) 589, 748, 1175, 1287
ApoI RAATTY 2 cut(s) 271, 1147
Asp700I GAANNNNTTC 2 cut(s) 1019, 1151
AsuHPI GGTGA 4 cut(s) 82, 272, 407, 1156
AsuII TTCGAA 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 644
BaeGI GKGCMC 1 cut(s) 1344
BamHI GGATCC 1 cut(s) 805
BanII GRGCYC 2 cut(s) 218, 853
BauI CACGAG 1 cut(s) 918
Bbv12I GWGCWC 1 cut(s) 1344
BbvI GCAGC 4 cut(s) 601, 760, 1162, 1299
BccI CCATC 4 cut(s) 226, 629, 904, 1123
BcgI CGANNNNNNTGC 2 cut(s) 1331, 1365
BciT130I CCWGG 3 cut(s) 531, 681, 990
BclI TGATCA 1 cut(s) 721
BcoDI GTCTC 2 cut(s) 163, 879
BfaI CTAG 5 cut(s) 555, 594, 645, 900, 1399
BfmI CTRYAG 1 cut(s) 668
BfrI CTTAAG 1 cut(s) 461
BisI GCNGC 6 cut(s) 560, 590, 749, 768, 1176, 1288
BlsI GCNGC 6 cut(s) 561, 591, 750, 769, 1177, 1289
Bme1390I CCNGG 3 cut(s) 531, 681, 990
BmiI GGNNCC 4 cut(s) 313, 535, 807, 943
BmrFI CCNGG 3 cut(s) 531, 681, 990
BmsI GCATC 3 cut(s) 58, 845, 904
BmtI GCTAGC 1 cut(s) 648
BplI GAGNNNNNCTC 2 cut(s) 794, 826
Bpu14I TTCGAA 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 679, 680
BsaWI WCCGGW 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 1256, 1301
Bse118I RCCGGY 1 cut(s) 744
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 3 cut(s) 531, 681, 990
BseDI CCNNGG 2 cut(s) 679, 680
BseGI GGATG 3 cut(s) 529, 919, 1311
BseLI CCNNNNNNNGG 3 cut(s) 138, 1256, 1301
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 4 cut(s) 370, 825, 866, 918
BseRI GAGGAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 1344
BseXI GCAGC 4 cut(s) 601, 760, 1162, 1299
BshFI GGCC 2 cut(s) 562, 767
BsiHKAI GWGCWC 1 cut(s) 1344
BsiSI CCGG 2 cut(s) 68, 745
BslFI GGGAC 1 cut(s) 660
BslI CCNNNNNNNGG 3 cut(s) 138, 1256, 1301
BsmAI GTCTC 2 cut(s) 163, 879
BsmFI GGGAC 1 cut(s) 660
BsnI GGCC 2 cut(s) 562, 767
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 3 cut(s) 218, 853, 1344
Bsp143I GATC 8 cut(s) 17, 81, 128, 721, 805, 821, 1039, 1111
BspACI CCGC 3 cut(s) 559, 587, 768
BspANI GGCC 2 cut(s) 562, 767
BspCNI CTCAG 4 cut(s) 369, 824, 865, 917
BspHI TCATGA 1 cut(s) 883
BspLI GGNNCC 4 cut(s) 313, 535, 807, 943
BspMAI CTGCAG 1 cut(s) 672
BspOI GCTAGC 1 cut(s) 648
BspPI GGATC 5 cut(s) 123, 800, 813, 829, 1106
BspQI GCTCTTC 1 cut(s) 174
BspT104I TTCGAA 1 cut(s) 44
BspTI CTTAAG 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 744
BssAI RCCGGY 1 cut(s) 744
BssECI CCNNGG 2 cut(s) 679, 680
BssMI GATC 8 cut(s) 17, 81, 128, 721, 805, 821, 1039, 1111
BssSI CACGAG 1 cut(s) 918
Bst2BI CACGAG 1 cut(s) 918
Bst2UI CCWGG 3 cut(s) 531, 681, 990
Bst4CI ACNGT 4 cut(s) 316, 774, 968, 1083
Bst6I CTCTTC 1 cut(s) 174
BstAFI CTTAAG 1 cut(s) 461
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 5 cut(s) 552, 615, 646, 746, 1292
BstDEI CTNAG 8 cut(s) 32, 162, 356, 740, 811, 852, 904, 1091
BstF5I GGATG 3 cut(s) 529, 919, 1311
BstKTI GATC 8 cut(s) 20, 84, 131, 724, 808, 824, 1042, 1114
BstMAI GTCTC 2 cut(s) 163, 879
BstMBI GATC 8 cut(s) 17, 81, 128, 721, 805, 821, 1039, 1111
BstMWI GCNNNNNNNGC 2 cut(s) 506, 556
BstNI CCWGG 3 cut(s) 531, 681, 990
BstNSI RCATGY 2 cut(s) 872, 1249
BstSCI CCNGG 3 cut(s) 529, 679, 988
BstSFI CTRYAG 1 cut(s) 668
BstSLI GKGCMC 1 cut(s) 1344
BstV1I GCAGC 4 cut(s) 601, 760, 1162, 1299
BstX2I RGATCY 2 cut(s) 805, 821
BstYI RGATCY 2 cut(s) 805, 821
BsuRI GGCC 2 cut(s) 562, 767
BtgZI GCGATG 1 cut(s) 710
BtsCI GGATG 3 cut(s) 529, 919, 1311
BtsI GCAGTG 1 cut(s) 677
BtsIMutI CAGTG 5 cut(s) 488, 677, 819, 912, 1333
Cac8I GCNNGC 5 cut(s) 552, 615, 646, 746, 1292
CaiI CAGNNNCTG 2 cut(s) 818, 1087
CciI TCATGA 1 cut(s) 883
Cfr10I RCCGGY 1 cut(s) 744
CseI GACGC 1 cut(s) 896
CviAII CATG 5 cut(s) 649, 869, 884, 1135, 1246
DdeI CTNAG 8 cut(s) 32, 162, 356, 740, 811, 852, 904, 1091
DpnI GATC 8 cut(s) 19, 83, 130, 723, 807, 823, 1041, 1113
DpnII GATC 8 cut(s) 17, 81, 128, 721, 805, 821, 1039, 1111
DraI TTTAAA 1 cut(s) 207
EaeI YGGCCR 2 cut(s) 560, 765
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco24I GRGCYC 2 cut(s) 218, 853
EcoRI GAATTC 1 cut(s) 1147
EcoRII CCWGG 3 cut(s) 529, 679, 988
EcoT38I GRGCYC 2 cut(s) 218, 853
FaeI CATG 5 cut(s) 652, 872, 887, 1138, 1249
FalI AAGNNNNNCTT 4 cut(s) 25, 57, 81, 113
FaqI GGGAC 1 cut(s) 660
FatI CATG 5 cut(s) 648, 868, 883, 1134, 1245
FbaI TGATCA 1 cut(s) 721
FblI GTMKAC 1 cut(s) 172
Fnu4HI GCNGC 6 cut(s) 560, 590, 749, 768, 1176, 1288
FokI GGATG 3 cut(s) 536, 926, 1318
FriOI GRGCYC 2 cut(s) 218, 853
Fsp4HI GCNGC 6 cut(s) 560, 590, 749, 768, 1176, 1288
FspBI CTAG 5 cut(s) 555, 594, 645, 900, 1399
GluI GCNGC 6 cut(s) 560, 590, 749, 768, 1176, 1288
HaeIII GGCC 2 cut(s) 562, 767
HapII CCGG 2 cut(s) 68, 745
HgaI GACGC 1 cut(s) 896
Hin1II CATG 5 cut(s) 652, 872, 887, 1138, 1249
HincII GTYRAC 1 cut(s) 1273
HindII GTYRAC 1 cut(s) 1273
HindIII AAGCTT 5 cut(s) 39, 323, 330, 707, 1044
HinfI GANTC 9 cut(s) 25, 92, 266, 478, 782, 950, 973, 1319, 1353
HpaII CCGG 2 cut(s) 68, 745
HphI GGTGA 4 cut(s) 82, 272, 407, 1156
Hpy166II GTNNAC 3 cut(s) 173, 1273, 1342
Hpy188III TCNNGA 7 cut(s) 98, 227, 358, 786, 819, 884, 1009
Hpy8I GTNNAC 3 cut(s) 173, 1273, 1342
HpyAV CCTTC 5 cut(s) 386, 499, 923, 1247, 1355
HpyCH4III ACNGT 4 cut(s) 316, 774, 968, 1083
HpyCH4IV ACGT 1 cut(s) 1028
HpyCH4V TGCA 8 cut(s) 422, 670, 836, 923, 1158, 1168, 1178, 1342
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 556
HpyF3I CTNAG 8 cut(s) 32, 162, 356, 740, 811, 852, 904, 1091
HpySE526I ACGT 1 cut(s) 1028
Hsp92II CATG 5 cut(s) 652, 872, 887, 1138, 1249
KroI GCCGGC 1 cut(s) 744
KroNI GCCGGC 1 cut(s) 746
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 8 cut(s) 17, 81, 128, 721, 805, 821, 1039, 1111
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 118, 141
Lsp1109I GCAGC 4 cut(s) 601, 760, 1162, 1299
LweI GCATC 3 cut(s) 58, 845, 904
MaeI CTAG 5 cut(s) 555, 594, 645, 900, 1399
MaeII ACGT 1 cut(s) 1028
MaeIII GTNAC 3 cut(s) 413, 1083, 1094
MalI GATC 8 cut(s) 19, 83, 130, 723, 807, 823, 1041, 1113
MboI GATC 8 cut(s) 17, 81, 128, 721, 805, 821, 1039, 1111
MboII GAAGA 4 cut(s) 101, 113, 116, 191
MflI RGATCY 2 cut(s) 805, 821
MhlI GDGCHC 3 cut(s) 218, 853, 1344
MluCI AATT 4 cut(s) 61, 271, 511, 1147
MlyI GAGTC 3 cut(s) 260, 982, 1313
MmeI TCCRAC 2 cut(s) 429, 950
MnlI CCTC 9 cut(s) 126, 514, 796, 820, 948, 1063, 1172, 1250, 1359
MroNI GCCGGC 1 cut(s) 744
MroXI GAANNNNTTC 2 cut(s) 1019, 1151
MseI TTAA 4 cut(s) 206, 279, 327, 462
MspCI CTTAAG 1 cut(s) 461
MspI CCGG 2 cut(s) 68, 745
MspR9I CCNGG 3 cut(s) 531, 681, 990
MvaI CCWGG 3 cut(s) 531, 681, 990
MwoI GCNNNNNNNGC 2 cut(s) 506, 556
NaeI GCCGGC 1 cut(s) 746
NdeII GATC 8 cut(s) 17, 81, 128, 721, 805, 821, 1039, 1111
NgoMIV GCCGGC 1 cut(s) 744
NheI GCTAGC 1 cut(s) 644
NlaIII CATG 5 cut(s) 652, 872, 887, 1138, 1249
NlaIV GGNNCC 4 cut(s) 313, 535, 807, 943
NmuCI GTSAC 1 cut(s) 1094
NspI RCATGY 2 cut(s) 872, 1249
NspV TTCGAA 1 cut(s) 44
PagI TCATGA 1 cut(s) 883
PasI CCCWGGG 1 cut(s) 680
PciI ACATGT 1 cut(s) 868
PciSI GCTCTTC 1 cut(s) 174
PdiI GCCGGC 1 cut(s) 746
PdmI GAANNNNTTC 2 cut(s) 1019, 1151
PfeI GAWTC 6 cut(s) 25, 92, 478, 782, 950, 1353
PflMI CCANNNNNTGG 1 cut(s) 138
PkrI GCNGC 6 cut(s) 561, 591, 750, 769, 1177, 1289
PleI GAGTC 3 cut(s) 260, 981, 1313
PpsI GAGTC 3 cut(s) 260, 981, 1313
PscI ACATGT 1 cut(s) 868
Psp6I CCWGG 3 cut(s) 529, 679, 988
PspGI CCWGG 3 cut(s) 529, 679, 988
PspN4I GGNNCC 4 cut(s) 313, 535, 807, 943
PstI CTGCAG 1 cut(s) 672
PstNI CAGNNNCTG 2 cut(s) 818, 1087
PsuI RGATCY 2 cut(s) 805, 821
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 4 cut(s) 206, 279, 327, 462
SatI GCNGC 6 cut(s) 560, 590, 749, 768, 1176, 1288
Sau3AI GATC 8 cut(s) 17, 81, 128, 721, 805, 821, 1039, 1111
SchI GAGTC 3 cut(s) 260, 982, 1313
ScrFI CCNGG 3 cut(s) 531, 681, 990
SduI GDGCHC 3 cut(s) 218, 853, 1344
SfaNI GCATC 3 cut(s) 58, 845, 904
SfcI CTRYAG 1 cut(s) 668
SfuI TTCGAA 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 4 cut(s) 61, 271, 511, 1147
SsiI CCGC 3 cut(s) 559, 587, 768
SspI AATATT 1 cut(s) 832
SspMI CTAG 5 cut(s) 555, 594, 645, 900, 1399
StyD4I CCNGG 3 cut(s) 529, 679, 988
TaaI ACNGT 4 cut(s) 316, 774, 968, 1083
TaiI ACGT 1 cut(s) 1031
TaqI TCGA 7 cut(s) 44, 927, 953, 1010, 1197, 1230, 1351
TasI AATT 4 cut(s) 61, 271, 511, 1147
TauI GCSGC 2 cut(s) 562, 770
TfiI GAWTC 6 cut(s) 25, 92, 478, 782, 950, 1353
Tru1I TTAA 4 cut(s) 206, 279, 327, 462
Tru9I TTAA 4 cut(s) 206, 279, 327, 462
TscAI CASTG 5 cut(s) 488, 677, 819, 912, 1333
TseFI GTSAC 1 cut(s) 1094
TseI GCWGC 4 cut(s) 589, 748, 1175, 1287
Tsp45I GTSAC 1 cut(s) 1094
TspDTI ATGAA 7 cut(s) 257, 405, 540, 665, 704, 1028, 1091
TspRI CASTG 5 cut(s) 488, 677, 819, 912, 1333
Van91I CCANNNNNTGG 1 cut(s) 138
Vha464I CTTAAG 1 cut(s) 461
VneI GTGCAC 1 cut(s) 1340
XapI RAATTY 2 cut(s) 271, 1147
XceI RCATGY 2 cut(s) 872, 1249
XmiI GTMKAC 1 cut(s) 172
XmnI GAANNNNTTC 2 cut(s) 1019, 1151
XspI CTAG 5 cut(s) 555, 594, 645, 900, 1399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.