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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24100 AT4G30780 |
| fragaria_vesca | FvH4_4g10180 |
| malus_domestica | MD00G1164000.v1.1 MD16G1259500.v1.1 |
| prunus_persica | Prupe.1G102300_v2.0.a1 |
| pyrus_communis | pycom13g28620 pycom16g22740 |
| rosa_chinensis | RchiOBHm_Chr4g0405561 |
| rosa_laevigata | RLG00000008836 |
| rosa_multiflora | Rmu_sc0005023.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00350070 |
| rosa_rugosa | Rorug04G0060600 Rorug04G0060600 |
| rosa_samantha | Rh4AG132500 Rh4BG127400 Rh4CG140200 Rh4DG126800 |
| rosa_wichuraiana | Rw4G010730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1254 |
| Acc65I | GGTACC | 1 cut(s) | 19 |
| AccB1I | GGYRCC | 2 cut(s) | 19, 1483 |
| AccBSI | CCGCTC | 1 cut(s) | 70 |
| AciI | CCGC | 4 cut(s) | 68, 692, 1187, 1514 |
| AclWI | GGATC | 2 cut(s) | 815, 1390 |
| AcsI | RAATTY | 1 cut(s) | 352 |
| AcuI | CTGAAG | 3 cut(s) | 362, 1260, 1476 |
| AdeI | CACNNNGTG | 1 cut(s) | 624 |
| AfaI | GTAC | 3 cut(s) | 10, 21, 550 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 539, 1460 |
| AflII | CTTAAG | 1 cut(s) | 754 |
| AgeI | ACCGGT | 1 cut(s) | 22 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 749 |
| AjnI | CCWGG | 5 cut(s) | 544, 1067, 1102, 1215, 1486 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1386, 1418 |
| Alw26I | GTCTC | 2 cut(s) | 479, 587 |
| AlwI | GGATC | 2 cut(s) | 815, 1390 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1058 |
| ApeKI | GCWGC | 4 cut(s) | 254, 763, 1340, 1343 |
| ApoI | RAATTY | 1 cut(s) | 352 |
| AsiGI | ACCGGT | 1 cut(s) | 22 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 678 |
| Asp718I | GGTACC | 1 cut(s) | 19 |
| AspLEI | GCGC | 1 cut(s) | 1000 |
| AspS9I | GGNCC | 5 cut(s) | 65, 542, 866, 1333, 1450 |
| AsuC2I | CCSGG | 1 cut(s) | 590 |
| AsuHPI | GGTGA | 4 cut(s) | 37, 777, 906, 1376 |
| AsuII | TTCGAA | 2 cut(s) | 350, 978 |
| AsuNHI | GCTAGC | 2 cut(s) | 659, 1607 |
| AvaII | GGWCC | 5 cut(s) | 65, 542, 866, 1333, 1450 |
| BanI | GGYRCC | 2 cut(s) | 19, 1483 |
| BanII | GRGCYC | 1 cut(s) | 203 |
| BauI | CACGAG | 1 cut(s) | 1026 |
| BbsI | GAAGAC | 1 cut(s) | 1464 |
| BbvI | GCAGC | 4 cut(s) | 266, 775, 1327, 1355 |
| BccI | CCATC | 4 cut(s) | 211, 533, 925, 1355 |
| BciT130I | CCWGG | 5 cut(s) | 546, 1069, 1104, 1217, 1488 |
| BciVI | GTATCC | 1 cut(s) | 952 |
| BcnI | CCSGG | 1 cut(s) | 590 |
| BcoDI | GTCTC | 2 cut(s) | 479, 587 |
| BfaI | CTAG | 7 cut(s) | 171, 570, 609, 660, 1226, 1608, 1612 |
| BfmI | CTRYAG | 3 cut(s) | 252, 1325, 1341 |
| BfoI | RGCGCY | 1 cut(s) | 1001 |
| BfrI | CTTAAG | 1 cut(s) | 754 |
| BfuAI | ACCTGC | 1 cut(s) | 1254 |
| BfuI | GTATCC | 1 cut(s) | 952 |
| BisI | GCNGC | 4 cut(s) | 255, 764, 1341, 1344 |
| BlpI | GCTNAGC | 2 cut(s) | 438, 1250 |
| BlsI | GCNGC | 4 cut(s) | 256, 765, 1342, 1345 |
| Bme1390I | CCNGG | 6 cut(s) | 546, 590, 1069, 1104, 1217, 1488 |
| Bme18I | GGWCC | 5 cut(s) | 65, 542, 866, 1333, 1450 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 749 |
| BmgT120I | GGNCC | 5 cut(s) | 65, 542, 866, 1333, 1450 |
| BmiI | GGNNCC | 4 cut(s) | 21, 1335, 1452, 1485 |
| BmrFI | CCNGG | 6 cut(s) | 546, 590, 1069, 1104, 1217, 1488 |
| BmrI | ACTGGG | 1 cut(s) | 866 |
| BmsI | GCATC | 2 cut(s) | 920, 1012 |
| BmtI | GCTAGC | 2 cut(s) | 663, 1611 |
| BmuI | ACTGGG | 1 cut(s) | 866 |
| BpiI | GAAGAC | 1 cut(s) | 1464 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1243, 1275 |
| BpmI | CTGGAG | 3 cut(s) | 279, 309, 1455 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 438, 1250 |
| Bpu14I | TTCGAA | 2 cut(s) | 350, 978 |
| BpuEI | CTTGAG | 2 cut(s) | 222, 461 |
| BpuMI | CCSGG | 1 cut(s) | 590 |
| BsaI | GGTCTC | 1 cut(s) | 479 |
| BsaJI | CCNNGG | 5 cut(s) | 177, 1068, 1102, 1103, 1535 |
| BsaWI | WCCGGW | 1 cut(s) | 22 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 402, 432 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 539, 1460 |
| Bse118I | RCCGGY | 2 cut(s) | 22, 759 |
| Bse1I | ACTGG | 6 cut(s) | 496, 652, 730, 861, 928, 1183 |
| Bse3DI | GCAATG | 3 cut(s) | 692, 1038, 1233 |
| BseBI | CCWGG | 5 cut(s) | 546, 1069, 1104, 1217, 1488 |
| BseDI | CCNNGG | 5 cut(s) | 177, 1068, 1102, 1103, 1535 |
| BseGI | GGATG | 3 cut(s) | 203, 1027, 1405 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 539, 1460 |
| BseMI | GCAATG | 3 cut(s) | 692, 1038, 1233 |
| BseMII | CTCAG | 3 cut(s) | 182, 1026, 1241 |
| BseNI | ACTGG | 6 cut(s) | 496, 652, 730, 861, 928, 1183 |
| BseRI | GAGGAG | 1 cut(s) | 71 |
| BseXI | GCAGC | 4 cut(s) | 266, 775, 1327, 1355 |
| BseYI | CCCAGC | 1 cut(s) | 1007 |
| BshNI | GGYRCC | 2 cut(s) | 19, 1483 |
| BshTI | ACCGGT | 1 cut(s) | 22 |
| BsiSI | CCGG | 3 cut(s) | 23, 589, 760 |
| BslFI | GGGAC | 2 cut(s) | 340, 1085 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 539, 1460 |
| BsmAI | GTCTC | 2 cut(s) | 479, 587 |
| BsmFI | GGGAC | 2 cut(s) | 340, 1085 |
| BsmI | GAATGC | 2 cut(s) | 836, 974 |
| Bso31I | GGTCTC | 1 cut(s) | 479 |
| Bsp119I | TTCGAA | 2 cut(s) | 350, 978 |
| Bsp1286I | GDGCHC | 1 cut(s) | 203 |
| Bsp1407I | TGTACA | 1 cut(s) | 8 |
| Bsp143I | GATC | 4 cut(s) | 820, 1132, 1198, 1382 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 438, 1250 |
| BspACI | CCGC | 4 cut(s) | 68, 692, 1187, 1514 |
| BspCNI | CTCAG | 3 cut(s) | 183, 1025, 1242 |
| BspLI | GGNNCC | 4 cut(s) | 21, 1335, 1452, 1485 |
| BspMAI | CTGCAG | 3 cut(s) | 256, 1329, 1345 |
| BspMI | ACCTGC | 1 cut(s) | 1254 |
| BspOI | GCTAGC | 2 cut(s) | 663, 1611 |
| BspPI | GGATC | 2 cut(s) | 815, 1390 |
| BspQI | GCTCTTC | 1 cut(s) | 811 |
| BspT104I | TTCGAA | 2 cut(s) | 350, 978 |
| BspT107I | GGYRCC | 2 cut(s) | 19, 1483 |
| BspTI | CTTAAG | 1 cut(s) | 754 |
| BspTNI | GGTCTC | 1 cut(s) | 479 |
| BsrBI | CCGCTC | 1 cut(s) | 70 |
| BsrDI | GCAATG | 3 cut(s) | 692, 1038, 1233 |
| BsrFI | RCCGGY | 2 cut(s) | 22, 759 |
| BsrGI | TGTACA | 1 cut(s) | 8 |
| BsrI | ACTGG | 6 cut(s) | 496, 652, 730, 861, 928, 1183 |
| BssAI | RCCGGY | 2 cut(s) | 22, 759 |
| BssECI | CCNNGG | 5 cut(s) | 177, 1068, 1102, 1103, 1535 |
| BssMI | GATC | 4 cut(s) | 820, 1132, 1198, 1382 |
| BssSI | CACGAG | 1 cut(s) | 1026 |
| BssT1I | CCWWGG | 1 cut(s) | 177 |
| Bst2BI | CACGAG | 1 cut(s) | 1026 |
| Bst2UI | CCWGG | 5 cut(s) | 546, 1069, 1104, 1217, 1488 |
| Bst4CI | ACNGT | 5 cut(s) | 144, 331, 559, 1157, 1463 |
| Bst6I | CTCTTC | 3 cut(s) | 48, 811, 940 |
| BstAFI | CTTAAG | 1 cut(s) | 754 |
| BstAUI | TGTACA | 1 cut(s) | 8 |
| BstBI | TTCGAA | 2 cut(s) | 350, 978 |
| BstC8I | GCNNGC | 7 cut(s) | 234, 630, 661, 692, 761, 925, 1609 |
| BstDEI | CTNAG | 4 cut(s) | 191, 438, 1012, 1250 |
| BstF5I | GGATG | 3 cut(s) | 203, 1027, 1405 |
| BstH2I | RGCGCY | 1 cut(s) | 1001 |
| BstHHI | GCGC | 1 cut(s) | 1000 |
| BstKTI | GATC | 4 cut(s) | 823, 1135, 1201, 1385 |
| BstMAI | GTCTC | 2 cut(s) | 479, 587 |
| BstMBI | GATC | 4 cut(s) | 820, 1132, 1198, 1382 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 67, 254, 260, 521, 691, 971 |
| BstNI | CCWGG | 5 cut(s) | 546, 1069, 1104, 1217, 1488 |
| BstNSI | RCATGY | 1 cut(s) | 1225 |
| BstSCI | CCNGG | 6 cut(s) | 544, 588, 1067, 1102, 1215, 1486 |
| BstSFI | CTRYAG | 3 cut(s) | 252, 1325, 1341 |
| BstV1I | GCAGC | 4 cut(s) | 266, 775, 1327, 1355 |
| BstV2I | GAAGAC | 1 cut(s) | 1464 |
| BstX2I | RGATCY | 1 cut(s) | 820 |
| BstYI | RGATCY | 1 cut(s) | 820 |
| BsuI | GTATCC | 1 cut(s) | 952 |
| BtsCI | GGATG | 3 cut(s) | 203, 1027, 1405 |
| BtsIMutI | CAGTG | 2 cut(s) | 503, 737 |
| BveI | ACCTGC | 1 cut(s) | 1254 |
| Cac8I | GCNNGC | 7 cut(s) | 234, 630, 661, 692, 761, 925, 1609 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1058 |
| CfoI | GCGC | 1 cut(s) | 1000 |
| Cfr10I | RCCGGY | 2 cut(s) | 22, 759 |
| Cfr13I | GGNCC | 5 cut(s) | 65, 542, 866, 1333, 1450 |
| CsiI | ACCWGGT | 1 cut(s) | 544 |
| Csp6I | GTAC | 3 cut(s) | 9, 20, 549 |
| CspAI | ACCGGT | 1 cut(s) | 22 |
| CviAII | CATG | 5 cut(s) | 62, 801, 842, 1222, 1294 |
| CviQI | GTAC | 3 cut(s) | 9, 20, 549 |
| DdeI | CTNAG | 4 cut(s) | 191, 438, 1012, 1250 |
| DpnI | GATC | 4 cut(s) | 822, 1134, 1200, 1384 |
| DpnII | GATC | 4 cut(s) | 820, 1132, 1198, 1382 |
| DraIII | CACNNNGTG | 1 cut(s) | 624 |
| DriI | GACNNNNNGTC | 1 cut(s) | 749 |
| Eam1104I | CTCTTC | 3 cut(s) | 48, 811, 940 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 749 |
| EarI | CTCTTC | 3 cut(s) | 48, 811, 940 |
| EciI | GGCGGA | 1 cut(s) | 1176 |
| Eco130I | CCWWGG | 1 cut(s) | 177 |
| Eco24I | GRGCYC | 1 cut(s) | 203 |
| Eco31I | GGTCTC | 1 cut(s) | 479 |
| Eco47I | GGWCC | 5 cut(s) | 65, 542, 866, 1333, 1450 |
| Eco57I | CTGAAG | 3 cut(s) | 362, 1260, 1476 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1333, 1450 |
| EcoRII | CCWGG | 5 cut(s) | 544, 1067, 1102, 1215, 1486 |
| EcoT14I | CCWWGG | 1 cut(s) | 177 |
| EcoT38I | GRGCYC | 1 cut(s) | 203 |
| ErhI | CCWWGG | 1 cut(s) | 177 |
| FaeI | CATG | 5 cut(s) | 65, 804, 845, 1225, 1297 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 416, 448 |
| FaqI | GGGAC | 2 cut(s) | 340, 1085 |
| FatI | CATG | 5 cut(s) | 61, 800, 841, 1221, 1293 |
| FauI | CCCGC | 1 cut(s) | 699 |
| Fnu4HI | GCNGC | 4 cut(s) | 255, 764, 1341, 1344 |
| FokI | GGATG | 3 cut(s) | 190, 1034, 1412 |
| FriOI | GRGCYC | 1 cut(s) | 203 |
| Fsp4HI | GCNGC | 4 cut(s) | 255, 764, 1341, 1344 |
| FspBI | CTAG | 7 cut(s) | 171, 570, 609, 660, 1226, 1608, 1612 |
| GlaI | GCGC | 1 cut(s) | 999 |
| GluI | GCNGC | 4 cut(s) | 255, 764, 1341, 1344 |
| GsaI | CCCAGC | 1 cut(s) | 1011 |
| GsuI | CTGGAG | 3 cut(s) | 279, 309, 1455 |
| HaeII | RGCGCY | 1 cut(s) | 1001 |
| HapII | CCGG | 3 cut(s) | 23, 589, 760 |
| HhaI | GCGC | 1 cut(s) | 1000 |
| Hin1II | CATG | 5 cut(s) | 65, 804, 845, 1225, 1297 |
| Hin6I | GCGC | 1 cut(s) | 998 |
| HinP1I | GCGC | 1 cut(s) | 998 |
| HincII | GTYRAC | 1 cut(s) | 854 |
| HindII | GTYRAC | 1 cut(s) | 854 |
| HindIII | AAGCTT | 3 cut(s) | 230, 446, 722 |
| HinfI | GANTC | 6 cut(s) | 44, 782, 1141, 1307, 1505, 1600 |
| HpaII | CCGG | 3 cut(s) | 23, 589, 760 |
| HphI | GGTGA | 4 cut(s) | 37, 777, 906, 1376 |
| Hpy166II | GTNNAC | 3 cut(s) | 9, 653, 854 |
| Hpy8I | GTNNAC | 3 cut(s) | 9, 653, 854 |
| HpyCH4III | ACNGT | 5 cut(s) | 144, 331, 559, 1157, 1463 |
| HpyCH4IV | ACGT | 2 cut(s) | 79, 1374 |
| HpyCH4V | TGCA | 9 cut(s) | 254, 685, 834, 923, 1031, 1238, 1327, 1343, 1596 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 67, 254, 260, 521, 691, 971 |
| HpyF3I | CTNAG | 4 cut(s) | 191, 438, 1012, 1250 |
| HpySE526I | ACGT | 2 cut(s) | 79, 1374 |
| Hsp92II | CATG | 5 cut(s) | 65, 804, 845, 1225, 1297 |
| HspAI | GCGC | 1 cut(s) | 998 |
| KpnI | GGTACC | 1 cut(s) | 23 |
| KroI | GCCGGC | 1 cut(s) | 759 |
| KroNI | GCCGGC | 1 cut(s) | 761 |
| Kzo9I | GATC | 4 cut(s) | 820, 1132, 1198, 1382 |
| LguI | GCTCTTC | 1 cut(s) | 811 |
| LmnI | GCTCC | 5 cut(s) | 58, 260, 322, 1087, 1436 |
| Lsp1109I | GCAGC | 4 cut(s) | 266, 775, 1327, 1355 |
| LweI | GCATC | 2 cut(s) | 920, 1012 |
| MabI | ACCWGGT | 1 cut(s) | 544 |
| MaeI | CTAG | 7 cut(s) | 171, 570, 609, 660, 1226, 1608, 1612 |
| MaeII | ACGT | 2 cut(s) | 79, 1374 |
| MaeIII | GTNAC | 5 cut(s) | 144, 428, 734, 1142, 1370 |
| MalI | GATC | 4 cut(s) | 822, 1134, 1200, 1384 |
| MbiI | CCGCTC | 1 cut(s) | 70 |
| MboI | GATC | 4 cut(s) | 820, 1132, 1198, 1382 |
| MboII | GAAGA | 9 cut(s) | 65, 577, 798, 830, 927, 1469, 1489, 1598, 1601 |
| MflI | RGATCY | 1 cut(s) | 820 |
| MhlI | GDGCHC | 1 cut(s) | 203 |
| MluCI | AATT | 7 cut(s) | 219, 352, 526, 1063, 1081, 1262, 1517 |
| MlyI | GAGTC | 4 cut(s) | 38, 1150, 1499, 1609 |
| MmeI | TCCRAC | 2 cut(s) | 12, 1494 |
| MroNI | GCCGGC | 1 cut(s) | 759 |
| MroXI | GAANNNNTTC | 1 cut(s) | 678 |
| MseI | TTAA | 8 cut(s) | 218, 282, 294, 371, 704, 755, 1062, 1575 |
| MspA1I | CMGCKG | 1 cut(s) | 257 |
| MspCI | CTTAAG | 1 cut(s) | 754 |
| MspI | CCGG | 3 cut(s) | 23, 589, 760 |
| MspR9I | CCNGG | 6 cut(s) | 546, 590, 1069, 1104, 1217, 1488 |
| Mva1269I | GAATGC | 2 cut(s) | 836, 974 |
| MvaI | CCWGG | 5 cut(s) | 546, 1069, 1104, 1217, 1488 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 67, 254, 260, 521, 691, 971 |
| NaeI | GCCGGC | 1 cut(s) | 761 |
| NciI | CCSGG | 1 cut(s) | 590 |
| NdeII | GATC | 4 cut(s) | 820, 1132, 1198, 1382 |
| NgoMIV | GCCGGC | 1 cut(s) | 759 |
| NheI | GCTAGC | 2 cut(s) | 659, 1607 |
| NlaIII | CATG | 5 cut(s) | 65, 804, 845, 1225, 1297 |
| NlaIV | GGNNCC | 4 cut(s) | 21, 1335, 1452, 1485 |
| NmuCI | GTSAC | 3 cut(s) | 144, 734, 1142 |
| NspI | RCATGY | 1 cut(s) | 1225 |
| NspV | TTCGAA | 2 cut(s) | 350, 978 |
| PasI | CCCWGGG | 1 cut(s) | 1103 |
| PciSI | GCTCTTC | 1 cut(s) | 811 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1467 |
| PctI | GAATGC | 2 cut(s) | 836, 974 |
| PdiI | GCCGGC | 1 cut(s) | 761 |
| PdmI | GAANNNNTTC | 1 cut(s) | 678 |
| PfeI | GAWTC | 2 cut(s) | 782, 1307 |
| PfoI | TCCNGGA | 1 cut(s) | 588 |
| PinAI | ACCGGT | 1 cut(s) | 22 |
| PkrI | GCNGC | 4 cut(s) | 256, 765, 1342, 1345 |
| PleI | GAGTC | 4 cut(s) | 38, 1149, 1499, 1608 |
| PpsI | GAGTC | 4 cut(s) | 38, 1149, 1499, 1608 |
| PpuMI | RGGWCCY | 2 cut(s) | 1333, 1450 |
| Psp5II | RGGWCCY | 2 cut(s) | 1333, 1450 |
| Psp6I | CCWGG | 5 cut(s) | 544, 1067, 1102, 1215, 1486 |
| PspFI | CCCAGC | 1 cut(s) | 1007 |
| PspGI | CCWGG | 5 cut(s) | 544, 1067, 1102, 1215, 1486 |
| PspN4I | GGNNCC | 4 cut(s) | 21, 1335, 1452, 1485 |
| PspPI | GGNCC | 5 cut(s) | 65, 542, 866, 1333, 1450 |
| PspPPI | RGGWCCY | 2 cut(s) | 1333, 1450 |
| PstI | CTGCAG | 3 cut(s) | 256, 1329, 1345 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1058 |
| PsuI | RGATCY | 1 cut(s) | 820 |
| PvuII | CAGCTG | 1 cut(s) | 257 |
| RsaI | GTAC | 3 cut(s) | 10, 21, 550 |
| RsaNI | GTAC | 3 cut(s) | 9, 20, 549 |
| SapI | GCTCTTC | 1 cut(s) | 811 |
| SaqAI | TTAA | 8 cut(s) | 218, 282, 294, 371, 704, 755, 1062, 1575 |
| SatI | GCNGC | 4 cut(s) | 255, 764, 1341, 1344 |
| Sau3AI | GATC | 4 cut(s) | 820, 1132, 1198, 1382 |
| Sau96I | GGNCC | 5 cut(s) | 65, 542, 866, 1333, 1450 |
| SchI | GAGTC | 4 cut(s) | 38, 1150, 1499, 1609 |
| ScrFI | CCNGG | 6 cut(s) | 546, 590, 1069, 1104, 1217, 1488 |
| SduI | GDGCHC | 1 cut(s) | 203 |
| SexAI | ACCWGGT | 1 cut(s) | 544 |
| SfaNI | GCATC | 2 cut(s) | 920, 1012 |
| SfcI | CTRYAG | 3 cut(s) | 252, 1325, 1341 |
| SfuI | TTCGAA | 2 cut(s) | 350, 978 |
| SinI | GGWCC | 5 cut(s) | 65, 542, 866, 1333, 1450 |
| SmlI | CTYRAG | 3 cut(s) | 237, 476, 754 |
| SmoI | CTYRAG | 3 cut(s) | 237, 476, 754 |
| Sse9I | AATT | 7 cut(s) | 219, 352, 526, 1063, 1081, 1262, 1517 |
| SsiI | CCGC | 4 cut(s) | 68, 692, 1187, 1514 |
| SspI | AATATT | 1 cut(s) | 946 |
| SspMI | CTAG | 7 cut(s) | 171, 570, 609, 660, 1226, 1608, 1612 |
| StyD4I | CCNGG | 6 cut(s) | 544, 588, 1067, 1102, 1215, 1486 |
| StyI | CCWWGG | 1 cut(s) | 177 |
| TaaI | ACNGT | 5 cut(s) | 144, 331, 559, 1157, 1463 |
| TaiI | ACGT | 2 cut(s) | 82, 1377 |
| TaqI | TCGA | 6 cut(s) | 350, 422, 465, 978, 1124, 1305 |
| TasI | AATT | 7 cut(s) | 219, 352, 526, 1063, 1081, 1262, 1517 |
| TatI | WGTACW | 1 cut(s) | 8 |
| TfiI | GAWTC | 2 cut(s) | 782, 1307 |
| Tru1I | TTAA | 8 cut(s) | 218, 282, 294, 371, 704, 755, 1062, 1575 |
| Tru9I | TTAA | 8 cut(s) | 218, 282, 294, 371, 704, 755, 1062, 1575 |
| TscAI | CASTG | 2 cut(s) | 503, 737 |
| TseFI | GTSAC | 3 cut(s) | 144, 734, 1142 |
| TseI | GCWGC | 4 cut(s) | 254, 763, 1340, 1343 |
| Tsp45I | GTSAC | 3 cut(s) | 144, 734, 1142 |
| TspDTI | ATGAA | 2 cut(s) | 242, 1517 |
| TspRI | CASTG | 2 cut(s) | 503, 737 |
| Vha464I | CTTAAG | 1 cut(s) | 754 |
| VpaK11BI | GGWCC | 5 cut(s) | 65, 542, 866, 1333, 1450 |
| XapI | RAATTY | 1 cut(s) | 352 |
| XceI | RCATGY | 1 cut(s) | 1225 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1015 |
| XmnI | GAANNNNTTC | 1 cut(s) | 678 |
| XspI | CTAG | 7 cut(s) | 171, 570, 609, 660, 1226, 1608, 1612 |