Rroxscaffold_5G00350070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012165
Physical Location & Seq
Forward (+)
23601958 .. 23610269
8312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350070.1

Sequence Viewer

Length: 1761 bp
ATGGCGCCCGAGAAAGAATTCGAACAAGTGAATGAGAAAGTTACAACTCTTACCAACCAGCTAGAAGATTTGAAGCAAGTGGTTTTGACTTTGCTATCGAAGAACTCAACTCATTCCGAATGCGCAACGAAGCACCATCTACGGGAAATACCACAGGGACCTCAGGTGCAAATCATGAAGACAAATGATGAATACAAGAAATACTACTTTCTTTTGATGAAATCCGGCGATCTCCGTCAAACGACGCCGTGTAAGGATAAGCTGCCTGTGAAATTGGAGATCGAAGACTCCTTGGAGGAGGAGCATGGCCCCCTCTACAAGCGCTCCAAACCCTCTCCTGCTTTTCATGAGCCCTTTGGGTTTGAGGCTCAGGAAGAGCCCGTCTTTATTGGAATTAATTCAAATGAAGCTTGCTCAGGGGGTCCTCCTGCAGCAGGAGATGTACCAAGAGAAAATCTTAACTCTGGAGTTAAGAAGGAGATTAAAGCAAACGCTGCGGTGGGGGCTACTGATAAGCTTAAAGCGTCAAATTTTCCAGCTTCAACGTTAAGGATCGGTAGCTGGGAGTACAAATCAAGGTATGAGGGTGATTTAGTGGCAAAGTGTTATTTTGCAAAGCATAAGCTCGTATGGGAGGTTCTTGAAGGAGGCCTCAAGAGCAAAATAGAAATCCAGTGGTCAGATATCATGGCTCTGAAAGCGAACTGTCCTGATGATGGACCTGGTACTTTGAATGTTGTGTTGGCTAGACAACCTCTGTTCTTCAGGGAGACTAATCCTCAGCCTAGAAAGCATACTTTATGGCAAGCAACCTCAGATTTTACTGATGGGCAAGCAAGCCTGCATAGGCAACATTTTCTGCAATGTCCACAAGGACTGTTAAACAAGCATTTTGAAAAACTTATTCAGTGTGACACGCGTCTTTGCTTCTTAAGTCGACAGCCAGAGATCGTTTTGGATTCACCTTATTTTGAACAGCGGCCTTCTGTATTTGAAGACCAAGGAGAATCCAAAGGCCTTGGTTTTGACCAACCAGCAAGTGGTAAAGGATCCTCCATTTCTGGTTTCCAGGATATAGCATCACCATCTGCAAGTCAGTCATCATCTTTGAAGGCAGACCAGCAGGATTCAGCTGGTATGACATTAGAGCATCGGTCCAGAGAAGCTCCTTCCCCTAGCTCAGGAAATGGAAGTTCTGAAGTTGTTGATTCCAGGGGGCCAAGAAACTGGGAACAGATAAAAGTGCCTGGGCTCCATCCTTCAATGTCGATGAGTGATTTTATGAGTCACATTGGGAACTGTATTTCAGAACAAATGACTTCCGGAAATCCACCTTCTGCCGATCAACAGTCGGAATACCAGGATATTCTCGAGGACATTGCACAGTACCTGTTAAGTGACACTCAATTAACTGCAGCAGATGAGAGTCATGAGACATCTCTCATGTCCAGGGTCAATTCTCTTTGTTGCCTTTTGCAGAAGGACCCCACTTCTCTTCAGACTTCACAGGTTGAAGTTGAAGGCACAGATGGTGGAAGGGATATTCAGCTTAACCACACACCTGGTGGTATATCTGGAGCTGATATGCAGGCTCCTGAAGAGGATATGAAGGATGTTCCTGGAGGAAAGAAGGCACCGGGAATGTCGAGAAAAGACTCCTTCGGGGAATTGCTGTTTCACCTCCCTCGCATCGCCTCTCTTCCCTCACTTCCAAAAGTCTTGTTCAACATTTCAGAAGATTGTGAGAGTCAAGGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

586

Amino Acids

64.67

Weight (kDa)

5.3

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_TRF2_HOY1 PF24818 177 - 295 1.3e-61 TRF2/HOY1 PH-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24100 AT4G30780
fragaria_vesca FvH4_4g10180
malus_domestica MD00G1164000.v1.1 MD16G1259500.v1.1
prunus_persica Prupe.1G102300_v2.0.a1
pyrus_communis pycom13g28620 pycom16g22740
rosa_chinensis RchiOBHm_Chr4g0405561
rosa_laevigata RLG00000008836
rosa_multiflora Rmu_sc0005023.1_g000013
rosa_roxburghii Rroxscaffold_5G00350070
rosa_rugosa Rorug04G0060600 Rorug04G0060600
rosa_samantha Rh4AG132500 Rh4BG127400 Rh4CG140200 Rh4DG126800
rosa_wichuraiana Rw4G010730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 124
AccB1I GGYRCC 2 cut(s) 4, 1633
AccB7I CCANNNNNTGG 1 cut(s) 1040
AccI GTMKAC 1 cut(s) 937
AccII CGCG 1 cut(s) 919
AccIII TCCGGA 1 cut(s) 1322
AciI CCGC 2 cut(s) 497, 979
AclI AACGTT 1 cut(s) 545
AclWI GGATC 3 cut(s) 560, 1044, 1057
AcsI RAATTY 2 cut(s) 17, 529
AcuI CTGAAG 4 cut(s) 748, 1218, 1481, 1617
AcyI GRCGYC 2 cut(s) 5, 245
AdeI CACNNNGTG 1 cut(s) 1565
AfaI GTAC 4 cut(s) 444, 569, 727, 1388
AfeI AGCGCT 1 cut(s) 323
AfiI CCNNNNNNNGG 5 cut(s) 142, 434, 716, 1040, 1181
AflII CTTAAG 1 cut(s) 931
AflIII ACRYGT 1 cut(s) 917
AjnI CCWGG 8 cut(s) 721, 1068, 1211, 1246, 1359, 1448, 1561, 1618
AjuI GAANNNNNNNTTGG 2 cut(s) 725, 757
Alw26I GTCTC 2 cut(s) 764, 1427
AlwI GGATC 3 cut(s) 560, 1044, 1057
AlwNI CAGNNNCTG 1 cut(s) 1390
Ama87I CYCGRG 2 cut(s) 8, 1370
Aor13HI TCCGGA 1 cut(s) 1322
Aor51HI AGCGCT 1 cut(s) 323
AoxI GGCC 5 cut(s) 307, 649, 980, 1015, 1217
ApeKI GCWGC 4 cut(s) 262, 431, 494, 1415
ApoI RAATTY 2 cut(s) 17, 529
AseI ATTAAT 1 cut(s) 396
Asp700I GAANNNNTTC 2 cut(s) 17, 397
AspLEI GCGC 3 cut(s) 7, 125, 324
AspS9I GGNCC 7 cut(s) 158, 308, 422, 719, 1155, 1217, 1483
AsuC2I CCSGG 1 cut(s) 1638
AsuHPI GGTGA 4 cut(s) 599, 954, 1074, 1670
AsuII TTCGAA 1 cut(s) 21
AvaI CYCGRG 2 cut(s) 8, 1370
AvaII GGWCC 5 cut(s) 158, 422, 719, 1155, 1483
AxyI CCTNAGG 1 cut(s) 162
BamHI GGATCC 1 cut(s) 1049
BanI GGYRCC 2 cut(s) 4, 1633
BanII GRGCYC 3 cut(s) 354, 381, 1254
BbsI GAAGAC 3 cut(s) 185, 291, 1002
BbvCI CCTCAGC 1 cut(s) 780
BbvI GCAGC 4 cut(s) 249, 443, 481, 1427
BccI CCATC 6 cut(s) 144, 710, 821, 1093, 1263, 1523
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 1361, 1395
BciT130I CCWGG 8 cut(s) 723, 1070, 1213, 1248, 1361, 1450, 1563, 1620
BcnI CCSGG 1 cut(s) 1638
BcoDI GTCTC 2 cut(s) 764, 1427
BfaI CTAG 4 cut(s) 62, 747, 786, 1176
BfmI CTRYAG 2 cut(s) 429, 1413
BfoI RGCGCY 2 cut(s) 8, 325
BfrI CTTAAG 1 cut(s) 931
BisI GCNGC 5 cut(s) 263, 432, 495, 980, 1416
BlsI GCNGC 5 cut(s) 264, 433, 496, 981, 1417
Bme1390I CCNGG 9 cut(s) 723, 1070, 1213, 1248, 1361, 1450, 1563, 1620, 1638
Bme18I GGWCC 5 cut(s) 158, 422, 719, 1155, 1483
BmeT110I CYCGRG 2 cut(s) 8, 1370
BmgT120I GGNCC 7 cut(s) 158, 308, 422, 719, 1155, 1217, 1483
BmrFI CCNGG 9 cut(s) 723, 1070, 1213, 1248, 1361, 1450, 1563, 1620, 1638
BmrI ACTGGG 1 cut(s) 1237
BmsI GCATC 3 cut(s) 1088, 1159, 1698
BmuI ACTGGG 1 cut(s) 1237
BoxI GACNNNNGTC 1 cut(s) 918
BpiI GAAGAC 3 cut(s) 185, 291, 1002
BpmI CTGGAG 3 cut(s) 486, 1596, 1641
Bpu10I CCTNAGC 4 cut(s) 369, 415, 780, 1180
Bpu14I TTCGAA 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 638
BpuMI CCSGG 1 cut(s) 1638
BsaHI GRCGYC 2 cut(s) 5, 245
BsaJI CCNNGG 6 cut(s) 291, 1000, 1018, 1212, 1247, 1449
BsaWI WCCGGW 1 cut(s) 1322
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 5 cut(s) 142, 434, 716, 1040, 1181
Bse1I ACTGG 2 cut(s) 673, 1232
Bse21I CCTNAGG 1 cut(s) 162
Bse3DI GCAATG 2 cut(s) 869, 1377
BseAI TCCGGA 1 cut(s) 1322
BseBI CCWGG 8 cut(s) 723, 1070, 1213, 1248, 1361, 1450, 1563, 1620
BseDI CCNNGG 6 cut(s) 291, 1000, 1018, 1212, 1247, 1449
BseGI GGATG 2 cut(s) 1255, 1618
BseLI CCNNNNNNNGG 5 cut(s) 142, 434, 716, 1040, 1181
BseMI GCAATG 2 cut(s) 869, 1377
BseMII CTCAG 6 cut(s) 176, 383, 429, 794, 828, 1194
BseNI ACTGG 2 cut(s) 673, 1232
BseRI GAGGAG 2 cut(s) 311, 314
BseXI GCAGC 4 cut(s) 249, 443, 481, 1427
BseYI CCCAGC 1 cut(s) 561
Bsh1236I CGCG 1 cut(s) 919
BshFI GGCC 5 cut(s) 309, 651, 982, 1017, 1219
BshNI GGYRCC 2 cut(s) 4, 1633
BsiHKCI CYCGRG 2 cut(s) 8, 1370
BsiSI CCGG 3 cut(s) 225, 1323, 1637
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 5 cut(s) 142, 434, 716, 1040, 1181
BsmAI GTCTC 2 cut(s) 764, 1427
BsmFI GGGAC 1 cut(s) 171
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 5 cut(s) 309, 651, 982, 1017, 1219
BsoBI CYCGRG 2 cut(s) 8, 1370
Bsp119I TTCGAA 1 cut(s) 21
Bsp1286I GDGCHC 3 cut(s) 354, 381, 1254
Bsp13I TCCGGA 1 cut(s) 1322
Bsp143I GATC 6 cut(s) 229, 279, 552, 948, 1049, 1342
BspACI CCGC 2 cut(s) 497, 979
BspANI GGCC 5 cut(s) 309, 651, 982, 1017, 1219
BspCNI CTCAG 6 cut(s) 175, 382, 428, 793, 827, 1193
BspEI TCCGGA 1 cut(s) 1322
BspFNI CGCG 1 cut(s) 919
BspHI TCATGA 3 cut(s) 174, 346, 1429
BspMAI CTGCAG 2 cut(s) 433, 1417
BspPI GGATC 3 cut(s) 560, 1044, 1057
BspQI GCTCTTC 1 cut(s) 369
BspT104I TTCGAA 1 cut(s) 21
BspT107I GGYRCC 2 cut(s) 4, 1633
BspTI CTTAAG 1 cut(s) 931
BsrDI GCAATG 2 cut(s) 869, 1377
BsrI ACTGG 2 cut(s) 673, 1232
BssECI CCNNGG 6 cut(s) 291, 1000, 1018, 1212, 1247, 1449
BssMI GATC 6 cut(s) 229, 279, 552, 948, 1049, 1342
BssNI GRCGYC 2 cut(s) 5, 245
BssT1I CCWWGG 3 cut(s) 291, 1000, 1018
Bst2UI CCWGG 8 cut(s) 723, 1070, 1213, 1248, 1361, 1450, 1563, 1620
Bst4CI ACNGT 5 cut(s) 707, 879, 1301, 1350, 1386
Bst6I CTCTTC 4 cut(s) 369, 1500, 1593, 1704
BstACI GRCGYC 2 cut(s) 5, 245
BstAFI CTTAAG 1 cut(s) 931
BstAPI GCANNNNNTGC 1 cut(s) 494
BstBI TTCGAA 1 cut(s) 21
BstC8I GCNNGC 6 cut(s) 412, 807, 834, 838, 842, 1590
BstDEI CTNAG 6 cut(s) 162, 369, 415, 780, 814, 1180
BstENI CCTNNNNNAGG 2 cut(s) 432, 1179
BstF5I GGATG 2 cut(s) 1255, 1618
BstFNI CGCG 1 cut(s) 919
BstH2I RGCGCY 2 cut(s) 8, 325
BstHHI GCGC 3 cut(s) 7, 125, 324
BstKTI GATC 6 cut(s) 232, 282, 555, 951, 1052, 1345
BstMAI GTCTC 2 cut(s) 764, 1427
BstMBI GATC 6 cut(s) 229, 279, 552, 948, 1049, 1342
BstMWI GCNNNNNNNGC 5 cut(s) 494, 503, 657, 698, 790
BstNI CCWGG 8 cut(s) 723, 1070, 1213, 1248, 1361, 1450, 1563, 1620
BstPAI GACNNNNGTC 1 cut(s) 918
BstSCI CCNGG 9 cut(s) 721, 1068, 1211, 1246, 1359, 1448, 1561, 1618, 1636
BstSFI CTRYAG 2 cut(s) 429, 1413
BstUI CGCG 1 cut(s) 919
BstV1I GCAGC 4 cut(s) 249, 443, 481, 1427
BstV2I GAAGAC 3 cut(s) 185, 291, 1002
BstX2I RGATCY 1 cut(s) 1049
BstXI CCANNNNNNTGG 2 cut(s) 1227, 1562
BstYI RGATCY 1 cut(s) 1049
Bsu36I CCTNAGG 1 cut(s) 162
BsuRI GGCC 5 cut(s) 309, 651, 982, 1017, 1219
BtgZI GCGATG 1 cut(s) 1675
BtsCI GGATG 2 cut(s) 1255, 1618
BtsIMutI CAGTG 2 cut(s) 680, 914
Cac8I GCNNGC 6 cut(s) 412, 807, 834, 838, 842, 1590
CaiI CAGNNNCTG 1 cut(s) 1390
CciI TCATGA 3 cut(s) 174, 346, 1429
CfoI GCGC 3 cut(s) 7, 125, 324
Cfr13I GGNCC 7 cut(s) 158, 308, 422, 719, 1155, 1217, 1483
CseI GACGC 3 cut(s) 253, 513, 908
CsiI ACCWGGT 2 cut(s) 721, 1561
Csp6I GTAC 4 cut(s) 443, 568, 726, 1387
CviAII CATG 6 cut(s) 175, 305, 347, 688, 1430, 1444
CviQI GTAC 4 cut(s) 443, 568, 726, 1387
DdeI CTNAG 6 cut(s) 162, 369, 415, 780, 814, 1180
DinI GGCGCC 1 cut(s) 6
DpnI GATC 6 cut(s) 231, 281, 554, 950, 1051, 1344
DpnII GATC 6 cut(s) 229, 279, 552, 948, 1049, 1342
DraIII CACNNNGTG 1 cut(s) 1565
Eam1104I CTCTTC 4 cut(s) 369, 1500, 1593, 1704
EarI CTCTTC 4 cut(s) 369, 1500, 1593, 1704
Eco130I CCWWGG 3 cut(s) 291, 1000, 1018
Eco147I AGGCCT 2 cut(s) 651, 1017
Eco24I GRGCYC 3 cut(s) 354, 381, 1254
Eco32I GATATC 1 cut(s) 685
Eco47I GGWCC 5 cut(s) 158, 422, 719, 1155, 1483
Eco47III AGCGCT 1 cut(s) 323
Eco57I CTGAAG 4 cut(s) 748, 1218, 1481, 1617
Eco81I CCTNAGG 1 cut(s) 162
Eco88I CYCGRG 2 cut(s) 8, 1370
EcoNI CCTNNNNNAGG 2 cut(s) 432, 1179
EcoO109I RGGNCCY 3 cut(s) 158, 422, 1483
EcoRI GAATTC 1 cut(s) 17
EcoRII CCWGG 8 cut(s) 721, 1068, 1211, 1246, 1359, 1448, 1561, 1618
EcoRV GATATC 1 cut(s) 685
EcoT14I CCWWGG 3 cut(s) 291, 1000, 1018
EcoT38I GRGCYC 3 cut(s) 354, 381, 1254
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 291, 1000, 1018
FaeI CATG 6 cut(s) 178, 308, 350, 691, 1433, 1447
FaqI GGGAC 1 cut(s) 171
FatI CATG 6 cut(s) 174, 304, 346, 687, 1429, 1443
FblI GTMKAC 1 cut(s) 937
Fnu4HI GCNGC 5 cut(s) 263, 432, 495, 980, 1416
FokI GGATG 2 cut(s) 1242, 1625
FriOI GRGCYC 3 cut(s) 354, 381, 1254
Fsp4HI GCNGC 5 cut(s) 263, 432, 495, 980, 1416
FspBI CTAG 4 cut(s) 62, 747, 786, 1176
FspI TGCGCA 1 cut(s) 124
GlaI GCGC 3 cut(s) 6, 124, 323
GluI GCNGC 5 cut(s) 263, 432, 495, 980, 1416
GsaI CCCAGC 1 cut(s) 565
GsuI CTGGAG 3 cut(s) 486, 1596, 1641
HaeII RGCGCY 2 cut(s) 8, 325
HaeIII GGCC 5 cut(s) 309, 651, 982, 1017, 1219
HapII CCGG 3 cut(s) 225, 1323, 1637
HgaI GACGC 3 cut(s) 253, 513, 908
HhaI GCGC 3 cut(s) 7, 125, 324
Hin1I GRCGYC 2 cut(s) 5, 245
Hin1II CATG 6 cut(s) 178, 308, 350, 691, 1433, 1447
Hin6I GCGC 3 cut(s) 5, 123, 322
HinP1I GCGC 3 cut(s) 5, 123, 322
HincII GTYRAC 1 cut(s) 938
HindII GTYRAC 1 cut(s) 938
HindIII AAGCTT 2 cut(s) 408, 515
HinfI GANTC 9 cut(s) 287, 959, 1007, 1127, 1208, 1285, 1426, 1655, 1747
HpaII CCGG 3 cut(s) 225, 1323, 1637
HphI GGTGA 4 cut(s) 599, 954, 1074, 1670
Hpy166II GTNNAC 2 cut(s) 869, 938
Hpy188I TCNGA 9 cut(s) 118, 682, 696, 817, 1198, 1309, 1354, 1500, 1735
Hpy8I GTNNAC 2 cut(s) 869, 938
Hpy99I CGWCG 1 cut(s) 247
HpyCH4III ACNGT 5 cut(s) 707, 879, 1301, 1350, 1386
HpyCH4IV ACGT 1 cut(s) 545
HpyF10VI GCNNNNNNNGC 5 cut(s) 494, 503, 657, 698, 790
HpyF3I CTNAG 6 cut(s) 162, 369, 415, 780, 814, 1180
HpySE526I ACGT 1 cut(s) 545
Hsp92I GRCGYC 2 cut(s) 5, 245
Hsp92II CATG 6 cut(s) 178, 308, 350, 691, 1433, 1447
HspAI GCGC 3 cut(s) 5, 123, 322
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 1322
Kzo9I GATC 6 cut(s) 229, 279, 552, 948, 1049, 1342
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 6 cut(s) 301, 329, 1171, 1257, 1577, 1597
Lsp1109I GCAGC 4 cut(s) 249, 443, 481, 1427
LweI GCATC 3 cut(s) 1088, 1159, 1698
MabI ACCWGGT 2 cut(s) 721, 1561
MaeI CTAG 4 cut(s) 62, 747, 786, 1176
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 4 cut(s) 40, 911, 1286, 1397
MalI GATC 6 cut(s) 231, 281, 554, 950, 1051, 1344
MboI GATC 6 cut(s) 229, 279, 552, 948, 1049, 1342
MflI RGATCY 1 cut(s) 1049
MhlI GDGCHC 3 cut(s) 354, 381, 1254
MluCI AATT 8 cut(s) 17, 272, 393, 397, 529, 1406, 1456, 1667
MluI ACGCGT 1 cut(s) 917
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 5 cut(s) 281, 1294, 1435, 1649, 1756
MmeI TCCRAC 1 cut(s) 1332
MroI TCCGGA 1 cut(s) 1322
MroXI GAANNNNTTC 2 cut(s) 17, 397
MspA1I CMGCKG 2 cut(s) 979, 1133
MspCI CTTAAG 1 cut(s) 931
MspI CCGG 3 cut(s) 225, 1323, 1637
MspR9I CCNGG 9 cut(s) 723, 1070, 1213, 1248, 1361, 1450, 1563, 1620, 1638
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 8 cut(s) 723, 1070, 1213, 1248, 1361, 1450, 1563, 1620
MvnI CGCG 1 cut(s) 919
MwoI GCNNNNNNNGC 5 cut(s) 494, 503, 657, 698, 790
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 1638
NdeII GATC 6 cut(s) 229, 279, 552, 948, 1049, 1342
NlaIII CATG 6 cut(s) 178, 308, 350, 691, 1433, 1447
NmuCI GTSAC 3 cut(s) 911, 1286, 1397
NsbI TGCGCA 1 cut(s) 124
NspV TTCGAA 1 cut(s) 21
PaeR7I CTCGAG 1 cut(s) 1370
PagI TCATGA 3 cut(s) 174, 346, 1429
PceI AGGCCT 2 cut(s) 651, 1017
PciSI GCTCTTC 1 cut(s) 369
PctI GAATGC 1 cut(s) 125
PdmI GAANNNNTTC 2 cut(s) 17, 397
PfeI GAWTC 4 cut(s) 959, 1007, 1127, 1208
PflMI CCANNNNNTGG 1 cut(s) 1040
PfoI TCCNGGA 2 cut(s) 1068, 1618
PkrI GCNGC 5 cut(s) 264, 433, 496, 981, 1417
PleI GAGTC 5 cut(s) 281, 1293, 1434, 1649, 1755
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 5 cut(s) 281, 1293, 1434, 1649, 1755
PpuMI RGGWCCY 3 cut(s) 158, 422, 1483
PshAI GACNNNNGTC 1 cut(s) 918
PshBI ATTAAT 1 cut(s) 396
Psp1406I AACGTT 1 cut(s) 545
Psp5II RGGWCCY 3 cut(s) 158, 422, 1483
Psp6I CCWGG 8 cut(s) 721, 1068, 1211, 1246, 1359, 1448, 1561, 1618
PspFI CCCAGC 1 cut(s) 561
PspGI CCWGG 8 cut(s) 721, 1068, 1211, 1246, 1359, 1448, 1561, 1618
PspPI GGNCC 7 cut(s) 158, 308, 422, 719, 1155, 1217, 1483
PspPPI RGGWCCY 3 cut(s) 158, 422, 1483
PsrI GAACNNNNNNTAC 2 cut(s) 621, 653
PstI CTGCAG 2 cut(s) 433, 1417
PstNI CAGNNNCTG 1 cut(s) 1390
PsuI RGATCY 1 cut(s) 1049
PvuII CAGCTG 1 cut(s) 1133
RsaI GTAC 4 cut(s) 444, 569, 727, 1388
RsaNI GTAC 4 cut(s) 443, 568, 726, 1387
SalI GTCGAC 1 cut(s) 936
SapI GCTCTTC 1 cut(s) 369
SatI GCNGC 5 cut(s) 263, 432, 495, 980, 1416
Sau3AI GATC 6 cut(s) 229, 279, 552, 948, 1049, 1342
Sau96I GGNCC 7 cut(s) 158, 308, 422, 719, 1155, 1217, 1483
SchI GAGTC 5 cut(s) 281, 1294, 1435, 1649, 1756
ScrFI CCNGG 9 cut(s) 723, 1070, 1213, 1248, 1361, 1450, 1563, 1620, 1638
SduI GDGCHC 3 cut(s) 354, 381, 1254
SexAI ACCWGGT 2 cut(s) 721, 1561
SfaNI GCATC 3 cut(s) 1088, 1159, 1698
SfcI CTRYAG 2 cut(s) 429, 1413
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 1370
SfuI TTCGAA 1 cut(s) 21
SinI GGWCC 5 cut(s) 158, 422, 719, 1155, 1483
SlaI CTCGAG 1 cut(s) 1370
SmlI CTYRAG 3 cut(s) 653, 931, 1370
SmoI CTYRAG 3 cut(s) 653, 931, 1370
Sse9I AATT 8 cut(s) 17, 272, 393, 397, 529, 1406, 1456, 1667
SseBI AGGCCT 2 cut(s) 651, 1017
SsiI CCGC 2 cut(s) 497, 979
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 4 cut(s) 62, 747, 786, 1176
StuI AGGCCT 2 cut(s) 651, 1017
StyD4I CCNGG 9 cut(s) 721, 1068, 1211, 1246, 1359, 1448, 1561, 1618, 1636
StyI CCWWGG 3 cut(s) 291, 1000, 1018
TaaI ACNGT 5 cut(s) 707, 879, 1301, 1350, 1386
TaiI ACGT 1 cut(s) 548
TaqI TCGA 7 cut(s) 21, 98, 282, 937, 1268, 1371, 1646
TaqII GACCGA 1 cut(s) 1143
TasI AATT 8 cut(s) 17, 272, 393, 397, 529, 1406, 1456, 1667
TatI WGTACW 1 cut(s) 567
TauI GCSGC 1 cut(s) 982
TfiI GAWTC 4 cut(s) 959, 1007, 1127, 1208
TscAI CASTG 2 cut(s) 680, 914
TseFI GTSAC 3 cut(s) 911, 1286, 1397
TseI GCWGC 4 cut(s) 262, 431, 494, 1415
Tsp45I GTSAC 3 cut(s) 911, 1286, 1397
TspDTI ATGAA 6 cut(s) 191, 204, 233, 335, 420, 1622
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 2 cut(s) 680, 914
Van91I CCANNNNNTGG 1 cut(s) 1040
Vha464I CTTAAG 1 cut(s) 931
VpaK11BI GGWCC 5 cut(s) 158, 422, 719, 1155, 1483
VspI ATTAAT 1 cut(s) 396
XagI CCTNNNNNAGG 2 cut(s) 432, 1179
XapI RAATTY 2 cut(s) 17, 529
XcmI CCANNNNNNNNNTGG 2 cut(s) 1037, 1562
XhoI CTCGAG 1 cut(s) 1370
XmiI GTMKAC 1 cut(s) 937
XmnI GAANNNNTTC 2 cut(s) 17, 397
XspI CTAG 4 cut(s) 62, 747, 786, 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.