U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24370 AT4G31230 AT4G31230 |
| fragaria_vesca | FvH4_2g36560 FvH4_2g36560 |
| malus_domestica | MD15G1105300.v1.1 |
| prunus_persica | Prupe.1G457100_v2.0.a1 |
| pyrus_communis | pycom08g10450 |
| rosa_chinensis | RchiOBHm_Chr6g0305261 |
| rosa_laevigata | RLG00000010904 |
| rosa_multiflora | Rmu_ssc0000276.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00162990 Rroxscaffold_7G00163000 |
| rosa_rugosa | Rorug06G0339100 Rorug06G0339200 |
| rosa_samantha | Rh6AG450700 Rh6BG450700 Rh6CG464800 Rh6DG451400 |
| rosa_wichuraiana | Rw6G039280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 687, 711 |
| AccI | GTMKAC | 2 cut(s) | 1482, 1647 |
| AccII | CGCG | 1 cut(s) | 1319 |
| AccIII | TCCGGA | 2 cut(s) | 833, 1627 |
| AciI | CCGC | 9 cut(s) | 51, 380, 624, 1023, 1319, 1368, 1635, 1915, 1929 |
| AclI | AACGTT | 1 cut(s) | 1156 |
| AclWI | GGATC | 4 cut(s) | 242, 717, 878, 2102 |
| AcoI | YGGCCR | 2 cut(s) | 381, 2126 |
| AcsI | RAATTY | 1 cut(s) | 913 |
| AcuI | CTGAAG | 3 cut(s) | 733, 1290, 2163 |
| AfaI | GTAC | 2 cut(s) | 1105, 1403 |
| AfeI | AGCGCT | 1 cut(s) | 190 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 648, 1634, 2048 |
| AjiI | CACGTC | 1 cut(s) | 157 |
| AjnI | CCWGG | 2 cut(s) | 454, 1813 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 129, 161, 2075, 2107 |
| Alw21I | GWGCWC | 1 cut(s) | 2077 |
| AlwI | GGATC | 4 cut(s) | 242, 717, 878, 2102 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1514 |
| Aor13HI | TCCGGA | 2 cut(s) | 833, 1627 |
| Aor51HI | AGCGCT | 1 cut(s) | 190 |
| AoxI | GGCC | 3 cut(s) | 133, 381, 2126 |
| ApoI | RAATTY | 1 cut(s) | 913 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 345, 377, 1823, 1855 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 273 |
| AspA2I | CCTAGG | 1 cut(s) | 902 |
| AspLEI | GCGC | 1 cut(s) | 191 |
| AspS9I | GGNCC | 2 cut(s) | 1475, 1879 |
| AsuHPI | GGTGA | 2 cut(s) | 981, 1790 |
| AvaII | GGWCC | 2 cut(s) | 1475, 1879 |
| AvrII | CCTAGG | 1 cut(s) | 902 |
| BalI | TGGCCA | 1 cut(s) | 2128 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 847, 879 |
| BauI | CACGAG | 1 cut(s) | 1714 |
| BbsI | GAAGAC | 3 cut(s) | 844, 945, 2142 |
| Bbv12I | GWGCWC | 1 cut(s) | 2077 |
| BccI | CCATC | 1 cut(s) | 2302 |
| BciT130I | CCWGG | 2 cut(s) | 456, 1815 |
| BclI | TGATCA | 2 cut(s) | 946, 1498 |
| BfaI | CTAG | 9 cut(s) | 48, 588, 903, 939, 1184, 1694, 1829, 1872, 2078 |
| BfmI | CTRYAG | 6 cut(s) | 444, 678, 931, 1740, 2021, 2268 |
| BfoI | RGCGCY | 1 cut(s) | 192 |
| BfuAI | ACCTGC | 2 cut(s) | 687, 711 |
| BglII | AGATCT | 1 cut(s) | 752 |
| BlnI | CCTAGG | 1 cut(s) | 902 |
| BlpI | GCTNAGC | 1 cut(s) | 218 |
| BmcAI | AGTACT | 1 cut(s) | 1403 |
| Bme1390I | CCNGG | 2 cut(s) | 456, 1815 |
| Bme18I | GGWCC | 2 cut(s) | 1475, 1879 |
| BmgBI | CACGTC | 1 cut(s) | 157 |
| BmgT120I | GGNCC | 2 cut(s) | 1475, 1879 |
| BmiI | GGNNCC | 2 cut(s) | 406, 1881 |
| BmrFI | CCNGG | 2 cut(s) | 456, 1815 |
| BmsI | GCATC | 2 cut(s) | 1525, 1603 |
| BpiI | GAAGAC | 3 cut(s) | 844, 945, 2142 |
| BpmI | CTGGAG | 2 cut(s) | 394, 1094 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1785, 2180, 2223 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 218 |
| BpuEI | CTTGAG | 2 cut(s) | 353, 1527 |
| BsaAI | YACGTR | 1 cut(s) | 370 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1018 |
| BsaJI | CCNNGG | 1 cut(s) | 902 |
| BsaWI | WCCGGW | 2 cut(s) | 833, 1627 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 648, 1634, 2048 |
| Bse1I | ACTGG | 6 cut(s) | 1077, 1508, 1759, 2111, 2308, 2331 |
| Bse3DI | GCAATG | 2 cut(s) | 781, 1221 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1018 |
| BseAI | TCCGGA | 2 cut(s) | 833, 1627 |
| BseBI | CCWGG | 2 cut(s) | 456, 1815 |
| BseDI | CCNNGG | 1 cut(s) | 902 |
| BseGI | GGATG | 4 cut(s) | 12, 1019, 1594, 1643 |
| BseJI | GATNNNNATC | 1 cut(s) | 1018 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 648, 1634, 2048 |
| BseMI | GCAATG | 2 cut(s) | 781, 1221 |
| BseNI | ACTGG | 6 cut(s) | 1077, 1508, 1759, 2111, 2308, 2331 |
| BseRI | GAGGAG | 6 cut(s) | 350, 552, 591, 888, 1075, 1361 |
| BsgI | GTGCAG | 4 cut(s) | 280, 472, 531, 2193 |
| Bsh1236I | CGCG | 1 cut(s) | 1319 |
| BshFI | GGCC | 3 cut(s) | 135, 383, 2128 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2077 |
| BsiSI | CCGG | 2 cut(s) | 834, 1628 |
| BslFI | GGGAC | 2 cut(s) | 1515, 1865 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 648, 1634, 2048 |
| BsmFI | GGGAC | 2 cut(s) | 1515, 1865 |
| BsmI | GAATGC | 1 cut(s) | 1637 |
| BsnI | GGCC | 3 cut(s) | 135, 383, 2128 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2077 |
| Bsp13I | TCCGGA | 2 cut(s) | 833, 1627 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 218 |
| BspACI | CCGC | 9 cut(s) | 51, 380, 624, 1023, 1319, 1368, 1635, 1915, 1929 |
| BspANI | GGCC | 3 cut(s) | 135, 383, 2128 |
| BspEI | TCCGGA | 2 cut(s) | 833, 1627 |
| BspFNI | CGCG | 1 cut(s) | 1319 |
| BspLI | GGNNCC | 2 cut(s) | 406, 1881 |
| BspMAI | CTGCAG | 1 cut(s) | 1744 |
| BspMI | ACCTGC | 2 cut(s) | 687, 711 |
| BspPI | GGATC | 4 cut(s) | 242, 717, 878, 2102 |
| BsrDI | GCAATG | 2 cut(s) | 781, 1221 |
| BsrI | ACTGG | 6 cut(s) | 1077, 1508, 1759, 2111, 2308, 2331 |
| BssECI | CCNNGG | 1 cut(s) | 902 |
| BssSI | CACGAG | 1 cut(s) | 1714 |
| BssT1I | CCWWGG | 1 cut(s) | 902 |
| Bst2BI | CACGAG | 1 cut(s) | 1714 |
| Bst2UI | CCWGG | 2 cut(s) | 456, 1815 |
| Bst6I | CTCTTC | 5 cut(s) | 201, 763, 1167, 1301, 2139 |
| BstBAI | YACGTR | 1 cut(s) | 370 |
| BstC8I | GCNNGC | 4 cut(s) | 639, 1111, 1425, 1933 |
| BstF5I | GGATG | 4 cut(s) | 12, 1019, 1594, 1643 |
| BstFNI | CGCG | 1 cut(s) | 1319 |
| BstH2I | RGCGCY | 1 cut(s) | 192 |
| BstHHI | GCGC | 1 cut(s) | 191 |
| BstNI | CCWGG | 2 cut(s) | 456, 1815 |
| BstSCI | CCNGG | 2 cut(s) | 454, 1813 |
| BstSFI | CTRYAG | 6 cut(s) | 444, 678, 931, 1740, 2021, 2268 |
| BstSNI | TACGTA | 1 cut(s) | 370 |
| BstUI | CGCG | 1 cut(s) | 1319 |
| BstV2I | GAAGAC | 3 cut(s) | 844, 945, 2142 |
| BstX2I | RGATCY | 2 cut(s) | 247, 752 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 358 |
| BstYI | RGATCY | 2 cut(s) | 247, 752 |
| BsuRI | GGCC | 3 cut(s) | 135, 383, 2128 |
| BtrI | CACGTC | 1 cut(s) | 157 |
| BtsCI | GGATG | 4 cut(s) | 12, 1019, 1594, 1643 |
| BtsIMutI | CAGTG | 7 cut(s) | 981, 993, 1515, 1752, 1908, 2139, 2361 |
| BveI | ACCTGC | 2 cut(s) | 687, 711 |
| Cac8I | GCNNGC | 4 cut(s) | 639, 1111, 1425, 1933 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1514 |
| CfoI | GCGC | 1 cut(s) | 191 |
| Cfr13I | GGNCC | 2 cut(s) | 1475, 1879 |
| Csp6I | GTAC | 2 cut(s) | 1104, 1402 |
| CviAII | CATG | 6 cut(s) | 200, 553, 925, 1603, 1657, 1918 |
| CviQI | GTAC | 2 cut(s) | 1104, 1402 |
| DraI | TTTAAA | 1 cut(s) | 1335 |
| EaeI | YGGCCR | 2 cut(s) | 381, 2126 |
| Eam1104I | CTCTTC | 5 cut(s) | 201, 763, 1167, 1301, 2139 |
| EarI | CTCTTC | 5 cut(s) | 201, 763, 1167, 1301, 2139 |
| EciI | GGCGGA | 1 cut(s) | 1012 |
| Eco105I | TACGTA | 1 cut(s) | 370 |
| Eco130I | CCWWGG | 1 cut(s) | 902 |
| Eco32I | GATATC | 1 cut(s) | 1854 |
| Eco47I | GGWCC | 2 cut(s) | 1475, 1879 |
| Eco47III | AGCGCT | 1 cut(s) | 190 |
| Eco57I | CTGAAG | 3 cut(s) | 733, 1290, 2163 |
| EcoRII | CCWGG | 2 cut(s) | 454, 1813 |
| EcoRV | GATATC | 1 cut(s) | 1854 |
| EcoT14I | CCWWGG | 1 cut(s) | 902 |
| ErhI | CCWWGG | 1 cut(s) | 902 |
| FaeI | CATG | 6 cut(s) | 203, 556, 928, 1606, 1660, 1921 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1668, 1700 |
| FaqI | GGGAC | 2 cut(s) | 1515, 1865 |
| FatI | CATG | 6 cut(s) | 199, 552, 924, 1602, 1656, 1917 |
| FauNDI | CATATG | 1 cut(s) | 2334 |
| FbaI | TGATCA | 2 cut(s) | 946, 1498 |
| FblI | GTMKAC | 2 cut(s) | 1482, 1647 |
| FokI | GGATG | 4 cut(s) | 19, 1006, 1581, 1650 |
| FspBI | CTAG | 9 cut(s) | 48, 588, 903, 939, 1184, 1694, 1829, 1872, 2078 |
| GlaI | GCGC | 1 cut(s) | 190 |
| GsuI | CTGGAG | 2 cut(s) | 394, 1094 |
| HaeII | RGCGCY | 1 cut(s) | 192 |
| HaeIII | GGCC | 3 cut(s) | 135, 383, 2128 |
| HapII | CCGG | 2 cut(s) | 834, 1628 |
| HhaI | GCGC | 1 cut(s) | 191 |
| Hin1II | CATG | 6 cut(s) | 203, 556, 928, 1606, 1660, 1921 |
| Hin6I | GCGC | 1 cut(s) | 189 |
| HinP1I | GCGC | 1 cut(s) | 189 |
| HincII | GTYRAC | 1 cut(s) | 1315 |
| HindII | GTYRAC | 1 cut(s) | 1315 |
| HindIII | AAGCTT | 2 cut(s) | 161, 1329 |
| HpaII | CCGG | 2 cut(s) | 834, 1628 |
| HphI | GGTGA | 2 cut(s) | 981, 1790 |
| Hpy166II | GTNNAC | 7 cut(s) | 154, 373, 1315, 1483, 1648, 1706, 1798 |
| Hpy188III | TCNNGA | 9 cut(s) | 251, 479, 806, 834, 1003, 1496, 1532, 1628, 2068 |
| Hpy8I | GTNNAC | 7 cut(s) | 154, 373, 1315, 1483, 1648, 1706, 1798 |
| HpyAV | CCTTC | 9 cut(s) | 32, 180, 248, 624, 666, 757, 873, 960, 1457 |
| HpyCH4IV | ACGT | 4 cut(s) | 24, 156, 369, 1156 |
| HpySE526I | ACGT | 4 cut(s) | 24, 156, 369, 1156 |
| Hsp92II | CATG | 6 cut(s) | 203, 556, 928, 1606, 1660, 1921 |
| HspAI | GCGC | 1 cut(s) | 189 |
| Kpn2I | TCCGGA | 2 cut(s) | 833, 1627 |
| Ksp22I | TGATCA | 2 cut(s) | 946, 1498 |
| LmnI | GCTCC | 3 cut(s) | 481, 565, 1668 |
| LweI | GCATC | 2 cut(s) | 1525, 1603 |
| MaeI | CTAG | 9 cut(s) | 48, 588, 903, 939, 1184, 1694, 1829, 1872, 2078 |
| MaeII | ACGT | 4 cut(s) | 24, 156, 369, 1156 |
| MaeIII | GTNAC | 2 cut(s) | 1835, 1903 |
| MflI | RGATCY | 2 cut(s) | 247, 752 |
| MhlI | GDGCHC | 1 cut(s) | 2077 |
| MlsI | TGGCCA | 1 cut(s) | 2128 |
| MluCI | AATT | 6 cut(s) | 118, 913, 1292, 1556, 2010, 2156 |
| MluNI | TGGCCA | 1 cut(s) | 2128 |
| MlyI | GAGTC | 6 cut(s) | 39, 347, 668, 752, 1320, 1349 |
| MmeI | TCCRAC | 4 cut(s) | 981, 1139, 1910, 2324 |
| Mox20I | TGGCCA | 1 cut(s) | 2128 |
| MroI | TCCGGA | 2 cut(s) | 833, 1627 |
| MroXI | GAANNNNTTC | 1 cut(s) | 273 |
| MscI | TGGCCA | 1 cut(s) | 2128 |
| MseI | TTAA | 8 cut(s) | 102, 593, 797, 1068, 1334, 1518, 2166, 2237 |
| MslI | CAYNNNNRTG | 2 cut(s) | 238, 2337 |
| Msp20I | TGGCCA | 1 cut(s) | 2128 |
| MspA1I | CMGCKG | 2 cut(s) | 1268, 1931 |
| MspI | CCGG | 2 cut(s) | 834, 1628 |
| MspR9I | CCNGG | 2 cut(s) | 456, 1815 |
| Mva1269I | GAATGC | 1 cut(s) | 1637 |
| MvaI | CCWGG | 2 cut(s) | 456, 1815 |
| MvnI | CGCG | 1 cut(s) | 1319 |
| NdeI | CATATG | 1 cut(s) | 2334 |
| NlaIII | CATG | 6 cut(s) | 203, 556, 928, 1606, 1660, 1921 |
| NlaIV | GGNNCC | 2 cut(s) | 406, 1881 |
| NmuCI | GTSAC | 1 cut(s) | 1903 |
| PctI | GAATGC | 1 cut(s) | 1637 |
| PdmI | GAANNNNTTC | 1 cut(s) | 273 |
| PfeI | GAWTC | 5 cut(s) | 227, 517, 809, 1734, 2255 |
| PleI | GAGTC | 6 cut(s) | 38, 346, 667, 751, 1319, 1348 |
| PpsI | GAGTC | 6 cut(s) | 38, 346, 667, 751, 1319, 1348 |
| Ppu21I | YACGTR | 1 cut(s) | 370 |
| Psp1406I | AACGTT | 1 cut(s) | 1156 |
| Psp6I | CCWGG | 2 cut(s) | 454, 1813 |
| PspGI | CCWGG | 2 cut(s) | 454, 1813 |
| PspN4I | GGNNCC | 2 cut(s) | 406, 1881 |
| PspPI | GGNCC | 2 cut(s) | 1475, 1879 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2299, 2331 |
| PstI | CTGCAG | 1 cut(s) | 1744 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1514 |
| PsuI | RGATCY | 2 cut(s) | 247, 752 |
| PvuII | CAGCTG | 1 cut(s) | 1268 |
| RsaI | GTAC | 2 cut(s) | 1105, 1403 |
| RsaNI | GTAC | 2 cut(s) | 1104, 1402 |
| RseI | CAYNNNNRTG | 2 cut(s) | 238, 2337 |
| SaqAI | TTAA | 8 cut(s) | 102, 593, 797, 1068, 1334, 1518, 2166, 2237 |
| Sau96I | GGNCC | 2 cut(s) | 1475, 1879 |
| ScaI | AGTACT | 1 cut(s) | 1403 |
| SchI | GAGTC | 6 cut(s) | 39, 347, 668, 752, 1320, 1349 |
| ScrFI | CCNGG | 2 cut(s) | 456, 1815 |
| SduI | GDGCHC | 1 cut(s) | 2077 |
| SfaNI | GCATC | 2 cut(s) | 1525, 1603 |
| SfcI | CTRYAG | 6 cut(s) | 444, 678, 931, 1740, 2021, 2268 |
| SinI | GGWCC | 2 cut(s) | 1475, 1879 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 238, 2337 |
| SmlI | CTYRAG | 2 cut(s) | 332, 1542 |
| SmoI | CTYRAG | 2 cut(s) | 332, 1542 |
| SnaBI | TACGTA | 1 cut(s) | 370 |
| Sse9I | AATT | 6 cut(s) | 118, 913, 1292, 1556, 2010, 2156 |
| SsiI | CCGC | 9 cut(s) | 51, 380, 624, 1023, 1319, 1368, 1635, 1915, 1929 |
| SspI | AATATT | 1 cut(s) | 273 |
| SspMI | CTAG | 9 cut(s) | 48, 588, 903, 939, 1184, 1694, 1829, 1872, 2078 |
| StyD4I | CCNGG | 2 cut(s) | 454, 1813 |
| StyI | CCWWGG | 1 cut(s) | 902 |
| TaiI | ACGT | 4 cut(s) | 27, 159, 372, 1159 |
| TaqI | TCGA | 7 cut(s) | 166, 363, 1002, 1572, 1950, 2067, 2106 |
| TasI | AATT | 6 cut(s) | 118, 913, 1292, 1556, 2010, 2156 |
| TatI | WGTACW | 2 cut(s) | 1103, 1401 |
| TauI | GCSGC | 1 cut(s) | 383 |
| TfiI | GAWTC | 5 cut(s) | 227, 517, 809, 1734, 2255 |
| Tru1I | TTAA | 8 cut(s) | 102, 593, 797, 1068, 1334, 1518, 2166, 2237 |
| Tru9I | TTAA | 8 cut(s) | 102, 593, 797, 1068, 1334, 1518, 2166, 2237 |
| TscAI | CASTG | 7 cut(s) | 981, 1000, 1515, 1759, 1908, 2146, 2361 |
| TseFI | GTSAC | 1 cut(s) | 1903 |
| Tsp45I | GTSAC | 1 cut(s) | 1903 |
| TspDTI | ATGAA | 7 cut(s) | 188, 222, 998, 1008, 1340, 1645, 2268 |
| TspGWI | ACGGA | 3 cut(s) | 130, 275, 804 |
| TspRI | CASTG | 7 cut(s) | 981, 1000, 1515, 1759, 1908, 2146, 2361 |
| VpaK11BI | GGWCC | 2 cut(s) | 1475, 1879 |
| XapI | RAATTY | 1 cut(s) | 913 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1713 |
| XmaJI | CCTAGG | 1 cut(s) | 902 |
| XmiI | GTMKAC | 2 cut(s) | 1482, 1647 |
| XmnI | GAANNNNTTC | 1 cut(s) | 273 |
| XspI | CTAG | 9 cut(s) | 48, 588, 903, 939, 1184, 1694, 1829, 1872, 2078 |
| ZrmI | AGTACT | 1 cut(s) | 1403 |