U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24370 AT4G31230 AT4G31230 |
| fragaria_vesca | FvH4_2g36560 FvH4_2g36560 |
| malus_domestica | MD15G1105300.v1.1 |
| prunus_persica | Prupe.1G457100_v2.0.a1 |
| pyrus_communis | pycom08g10450 |
| rosa_chinensis | RchiOBHm_Chr6g0305261 |
| rosa_laevigata | RLG00000010904 |
| rosa_multiflora | Rmu_ssc0000276.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00162990 Rroxscaffold_7G00163000 |
| rosa_rugosa | Rorug06G0339100 Rorug06G0339200 |
| rosa_samantha | Rh6AG450700 Rh6BG450700 Rh6CG464800 Rh6DG451400 |
| rosa_wichuraiana | Rw6G039280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1741 |
| AccB1I | GGYRCC | 2 cut(s) | 407, 1798 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 238 |
| AccI | GTMKAC | 1 cut(s) | 618 |
| AccII | CGCG | 2 cut(s) | 291, 541 |
| AccIII | TCCGGA | 1 cut(s) | 685 |
| AciI | CCGC | 4 cut(s) | 423, 748, 797, 1600 |
| AclWI | GGATC | 5 cut(s) | 251, 1865, 2021, 2034, 2128 |
| AcoI | YGGCCR | 1 cut(s) | 1788 |
| AcuI | CTGAAG | 2 cut(s) | 1209, 2190 |
| AfaI | GTAC | 7 cut(s) | 333, 1024, 1313, 1497, 1574, 1880, 1919 |
| AfeI | AGCGCT | 1 cut(s) | 1076 |
| AflIII | ACRYGT | 1 cut(s) | 539 |
| AgsI | TTSAA | 6 cut(s) | 198, 439, 845, 1493, 1729, 2019 |
| AjnI | CCWGG | 3 cut(s) | 266, 1790, 2263 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 126, 158 |
| Alw21I | GWGCWC | 3 cut(s) | 693, 999, 1719 |
| Alw26I | GTCTC | 1 cut(s) | 2168 |
| Alw44I | GTGCAC | 1 cut(s) | 1715 |
| AlwI | GGATC | 5 cut(s) | 251, 1865, 2021, 2034, 2128 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 47, 1814 |
| Ama87I | CYCGRG | 3 cut(s) | 526, 992, 2269 |
| Aor13HI | TCCGGA | 1 cut(s) | 685 |
| Aor51HI | AGCGCT | 1 cut(s) | 1076 |
| AoxI | GGCC | 5 cut(s) | 130, 734, 1539, 1788, 2045 |
| ApaLI | GTGCAC | 1 cut(s) | 1715 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 662, 694 |
| AspLEI | GCGC | 2 cut(s) | 1077, 1222 |
| AspS9I | GGNCC | 7 cut(s) | 229, 665, 735, 1394, 1539, 2119, 2261 |
| AsuC2I | CCSGG | 1 cut(s) | 456 |
| AsuHPI | GGTGA | 7 cut(s) | 177, 552, 639, 882, 1391, 2143, 2208 |
| AvaI | CYCGRG | 3 cut(s) | 526, 992, 2269 |
| AvaII | GGWCC | 5 cut(s) | 229, 665, 1394, 2119, 2261 |
| BaeGI | GKGCMC | 3 cut(s) | 461, 1719, 1803 |
| BalI | TGGCCA | 1 cut(s) | 1790 |
| BamHI | GGATCC | 1 cut(s) | 2026 |
| BanI | GGYRCC | 2 cut(s) | 407, 1798 |
| BanII | GRGCYC | 2 cut(s) | 693, 999 |
| BbsI | GAAGAC | 2 cut(s) | 345, 1602 |
| Bbv12I | GWGCWC | 3 cut(s) | 693, 999, 1719 |
| BbvCI | CCTCAGC | 1 cut(s) | 1122 |
| BccI | CCATC | 8 cut(s) | 29, 563, 694, 949, 1334, 1813, 2188, 2243 |
| BceAI | ACGGC | 2 cut(s) | 1062, 2018 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 310, 344 |
| BciT130I | CCWGG | 3 cut(s) | 268, 1792, 2265 |
| BclI | TGATCA | 1 cut(s) | 1947 |
| BcnI | CCSGG | 1 cut(s) | 456 |
| BcoDI | GTCTC | 1 cut(s) | 2168 |
| BfaI | CTAG | 5 cut(s) | 335, 657, 1197, 1415, 2246 |
| BfmI | CTRYAG | 1 cut(s) | 2240 |
| BfoI | RGCGCY | 1 cut(s) | 1078 |
| BfuAI | ACCTGC | 1 cut(s) | 1741 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1181, 2078 |
| BglII | AGATCT | 1 cut(s) | 2273 |
| BmcAI | AGTACT | 2 cut(s) | 1024, 1497 |
| Bme1390I | CCNGG | 4 cut(s) | 268, 456, 1792, 2265 |
| Bme18I | GGWCC | 5 cut(s) | 229, 665, 1394, 2119, 2261 |
| BmeT110I | CYCGRG | 3 cut(s) | 526, 992, 2269 |
| BmgT120I | GGNCC | 7 cut(s) | 229, 665, 735, 1394, 1539, 2119, 2261 |
| BmiI | GGNNCC | 7 cut(s) | 230, 409, 477, 572, 1540, 1800, 2028 |
| BmrFI | CCNGG | 4 cut(s) | 268, 456, 1792, 2265 |
| BmsI | GCATC | 3 cut(s) | 759, 1444, 1522 |
| BoxI | GACNNNNGTC | 1 cut(s) | 934 |
| BpiI | GAAGAC | 2 cut(s) | 345, 1602 |
| BpmI | CTGGAG | 3 cut(s) | 462, 534, 1055 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1122, 1643 |
| BpuEI | CTTGAG | 2 cut(s) | 983, 1446 |
| BpuMI | CCSGG | 1 cut(s) | 456 |
| BsaJI | CCNNGG | 4 cut(s) | 267, 1176, 1534, 2122 |
| BsaWI | WCCGGW | 2 cut(s) | 685, 2116 |
| Bse1I | ACTGG | 2 cut(s) | 1218, 1678 |
| Bse3DI | GCAATG | 2 cut(s) | 1140, 1971 |
| BseAI | TCCGGA | 1 cut(s) | 685 |
| BseBI | CCWGG | 3 cut(s) | 268, 1792, 2265 |
| BseDI | CCNNGG | 4 cut(s) | 267, 1176, 1534, 2122 |
| BseGI | GGATG | 5 cut(s) | 40, 352, 1309, 1513, 1562 |
| BseMI | GCAATG | 2 cut(s) | 1140, 1971 |
| BseMII | CTCAG | 5 cut(s) | 137, 929, 1113, 1539, 1866 |
| BseNI | ACTGG | 2 cut(s) | 1218, 1678 |
| BseRI | GAGGAG | 3 cut(s) | 137, 895, 994 |
| BseSI | GKGCMC | 3 cut(s) | 461, 1719, 1803 |
| BseYI | CCCAGC | 2 cut(s) | 737, 2220 |
| BsgI | GTGCAG | 2 cut(s) | 283, 2112 |
| Bsh1236I | CGCG | 2 cut(s) | 291, 541 |
| BshFI | GGCC | 5 cut(s) | 132, 736, 1541, 1790, 2047 |
| BshNI | GGYRCC | 2 cut(s) | 407, 1798 |
| BsiHKAI | GWGCWC | 3 cut(s) | 693, 999, 1719 |
| BsiHKCI | CYCGRG | 3 cut(s) | 526, 992, 2269 |
| BsiSI | CCGG | 4 cut(s) | 455, 686, 1851, 2117 |
| BslFI | GGGAC | 4 cut(s) | 58, 242, 1983, 2020 |
| BsmAI | GTCTC | 1 cut(s) | 2168 |
| BsmFI | GGGAC | 4 cut(s) | 58, 242, 1983, 2020 |
| BsnI | GGCC | 5 cut(s) | 132, 736, 1541, 1790, 2047 |
| BsoBI | CYCGRG | 3 cut(s) | 526, 992, 2269 |
| Bsp1286I | GDGCHC | 5 cut(s) | 461, 693, 999, 1719, 1803 |
| Bsp13I | TCCGGA | 1 cut(s) | 685 |
| Bsp19I | CCATGG | 1 cut(s) | 1176 |
| BspACI | CCGC | 4 cut(s) | 423, 748, 797, 1600 |
| BspANI | GGCC | 5 cut(s) | 132, 736, 1541, 1790, 2047 |
| BspCNI | CTCAG | 5 cut(s) | 136, 928, 1114, 1540, 1867 |
| BspEI | TCCGGA | 1 cut(s) | 685 |
| BspFNI | CGCG | 2 cut(s) | 291, 541 |
| BspLI | GGNNCC | 7 cut(s) | 230, 409, 477, 572, 1540, 1800, 2028 |
| BspMAI | CTGCAG | 1 cut(s) | 2244 |
| BspMI | ACCTGC | 1 cut(s) | 1741 |
| BspPI | GGATC | 5 cut(s) | 251, 1865, 2021, 2034, 2128 |
| BspT107I | GGYRCC | 2 cut(s) | 407, 1798 |
| BsrDI | GCAATG | 2 cut(s) | 1140, 1971 |
| BsrI | ACTGG | 2 cut(s) | 1218, 1678 |
| BssECI | CCNNGG | 4 cut(s) | 267, 1176, 1534, 2122 |
| BssT1I | CCWWGG | 3 cut(s) | 1176, 1534, 2122 |
| Bst2UI | CCWGG | 3 cut(s) | 268, 1792, 2265 |
| Bst4CI | ACNGT | 8 cut(s) | 463, 1116, 1299, 1476, 1622, 1721, 1830, 2207 |
| Bst6I | CTCTTC | 4 cut(s) | 1101, 1220, 1606, 2166 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 47, 1286 |
| BstC8I | GCNNGC | 4 cut(s) | 1543, 1895, 1962, 2079 |
| BstDEI | CTNAG | 8 cut(s) | 123, 431, 915, 1122, 1499, 1548, 1643, 1875 |
| BstDSI | CCRYGG | 1 cut(s) | 1176 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2126 |
| BstF5I | GGATG | 5 cut(s) | 40, 352, 1309, 1513, 1562 |
| BstFNI | CGCG | 2 cut(s) | 291, 541 |
| BstH2I | RGCGCY | 1 cut(s) | 1078 |
| BstHHI | GCGC | 2 cut(s) | 1077, 1222 |
| BstMAI | GTCTC | 1 cut(s) | 2168 |
| BstNI | CCWGG | 3 cut(s) | 268, 1792, 2265 |
| BstNSI | RCATGY | 1 cut(s) | 1897 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 934 |
| BstSCI | CCNGG | 4 cut(s) | 266, 454, 1790, 2263 |
| BstSFI | CTRYAG | 1 cut(s) | 2240 |
| BstSLI | GKGCMC | 3 cut(s) | 461, 1719, 1803 |
| BstUI | CGCG | 2 cut(s) | 291, 541 |
| BstV2I | GAAGAC | 2 cut(s) | 345, 1602 |
| BstX2I | RGATCY | 2 cut(s) | 2026, 2273 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2194 |
| BstYI | RGATCY | 2 cut(s) | 2026, 2273 |
| BsuRI | GGCC | 5 cut(s) | 132, 736, 1541, 1790, 2047 |
| BtgI | CCRYGG | 1 cut(s) | 1176 |
| BtgZI | GCGATG | 1 cut(s) | 2214 |
| BtsCI | GGATG | 5 cut(s) | 40, 352, 1309, 1513, 1562 |
| BtsI | GCAGTG | 2 cut(s) | 66, 2237 |
| BtsIMutI | CAGTG | 8 cut(s) | 66, 95, 459, 1291, 1671, 1815, 2189, 2237 |
| BveI | ACCTGC | 1 cut(s) | 1741 |
| Cac8I | GCNNGC | 4 cut(s) | 1543, 1895, 1962, 2079 |
| CaiI | CAGNNNCTG | 2 cut(s) | 47, 1814 |
| CfoI | GCGC | 2 cut(s) | 1077, 1222 |
| Cfr13I | GGNCC | 7 cut(s) | 229, 665, 735, 1394, 1539, 2119, 2261 |
| CseI | GACGC | 1 cut(s) | 530 |
| Csp6I | GTAC | 7 cut(s) | 332, 1023, 1312, 1496, 1573, 1879, 1918 |
| CviAII | CATG | 8 cut(s) | 152, 829, 850, 1177, 1576, 1894, 1982, 2062 |
| CviQI | GTAC | 7 cut(s) | 332, 1023, 1312, 1496, 1573, 1879, 1918 |
| DdeI | CTNAG | 8 cut(s) | 123, 431, 915, 1122, 1499, 1548, 1643, 1875 |
| EaeI | YGGCCR | 1 cut(s) | 1788 |
| Eam1104I | CTCTTC | 4 cut(s) | 1101, 1220, 1606, 2166 |
| EarI | CTCTTC | 4 cut(s) | 1101, 1220, 1606, 2166 |
| Ecl136II | GAGCTC | 2 cut(s) | 691, 997 |
| Eco130I | CCWWGG | 3 cut(s) | 1176, 1534, 2122 |
| Eco24I | GRGCYC | 2 cut(s) | 693, 999 |
| Eco32I | GATATC | 1 cut(s) | 880 |
| Eco47I | GGWCC | 5 cut(s) | 229, 665, 1394, 2119, 2261 |
| Eco47III | AGCGCT | 1 cut(s) | 1076 |
| Eco53kI | GAGCTC | 2 cut(s) | 691, 997 |
| Eco57I | CTGAAG | 2 cut(s) | 1209, 2190 |
| Eco88I | CYCGRG | 3 cut(s) | 526, 992, 2269 |
| EcoICRI | GAGCTC | 2 cut(s) | 691, 997 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2126 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1539 |
| EcoRII | CCWGG | 3 cut(s) | 266, 1790, 2263 |
| EcoRV | GATATC | 1 cut(s) | 880 |
| EcoT14I | CCWWGG | 3 cut(s) | 1176, 1534, 2122 |
| EcoT38I | GRGCYC | 2 cut(s) | 693, 999 |
| ErhI | CCWWGG | 3 cut(s) | 1176, 1534, 2122 |
| FaeI | CATG | 8 cut(s) | 155, 832, 853, 1180, 1579, 1897, 1985, 2065 |
| FaqI | GGGAC | 4 cut(s) | 58, 242, 1983, 2020 |
| FatI | CATG | 8 cut(s) | 151, 828, 849, 1176, 1575, 1893, 1981, 2061 |
| FauI | CCCGC | 1 cut(s) | 804 |
| FauNDI | CATATG | 1 cut(s) | 613 |
| FbaI | TGATCA | 1 cut(s) | 1947 |
| FblI | GTMKAC | 1 cut(s) | 618 |
| FokI | GGATG | 5 cut(s) | 47, 359, 1316, 1500, 1569 |
| FriOI | GRGCYC | 2 cut(s) | 693, 999 |
| FspBI | CTAG | 5 cut(s) | 335, 657, 1197, 1415, 2246 |
| GlaI | GCGC | 2 cut(s) | 1076, 1221 |
| GsaI | CCCAGC | 2 cut(s) | 741, 2224 |
| GsuI | CTGGAG | 3 cut(s) | 462, 534, 1055 |
| HaeII | RGCGCY | 1 cut(s) | 1078 |
| HaeIII | GGCC | 5 cut(s) | 132, 736, 1541, 1790, 2047 |
| HapII | CCGG | 4 cut(s) | 455, 686, 1851, 2117 |
| HgaI | GACGC | 1 cut(s) | 530 |
| HhaI | GCGC | 2 cut(s) | 1077, 1222 |
| Hin1II | CATG | 8 cut(s) | 155, 832, 853, 1180, 1579, 1897, 1985, 2065 |
| Hin6I | GCGC | 2 cut(s) | 1075, 1220 |
| HinP1I | GCGC | 2 cut(s) | 1075, 1220 |
| HinfI | GANTC | 9 cut(s) | 341, 435, 704, 779, 845, 1203, 1230, 1364, 1975 |
| HpaII | CCGG | 4 cut(s) | 455, 686, 1851, 2117 |
| HphI | GGTGA | 7 cut(s) | 177, 552, 639, 882, 1391, 2143, 2208 |
| Hpy166II | GTNNAC | 6 cut(s) | 619, 1567, 1625, 1717, 1918, 2261 |
| Hpy188I | TCNGA | 7 cut(s) | 126, 346, 607, 709, 1256, 1303, 1912 |
| Hpy8I | GTNNAC | 6 cut(s) | 619, 1567, 1625, 1717, 1918, 2261 |
| Hpy99I | CGWCG | 1 cut(s) | 1781 |
| HpyAV | CCTTC | 5 cut(s) | 290, 726, 858, 1376, 1996 |
| HpyCH4III | ACNGT | 8 cut(s) | 463, 1116, 1299, 1476, 1622, 1721, 1830, 2207 |
| HpyCH4IV | ACGT | 1 cut(s) | 1779 |
| HpyF3I | CTNAG | 8 cut(s) | 123, 431, 915, 1122, 1499, 1548, 1643, 1875 |
| HpySE526I | ACGT | 1 cut(s) | 1779 |
| Hsp92II | CATG | 8 cut(s) | 155, 832, 853, 1180, 1579, 1897, 1985, 2065 |
| HspAI | GCGC | 2 cut(s) | 1075, 1220 |
| Kpn2I | TCCGGA | 1 cut(s) | 685 |
| Ksp22I | TGATCA | 1 cut(s) | 1947 |
| LmnI | GCTCC | 7 cut(s) | 38, 481, 553, 688, 696, 1536, 1587 |
| LweI | GCATC | 3 cut(s) | 759, 1444, 1522 |
| MaeI | CTAG | 5 cut(s) | 335, 657, 1197, 1415, 2246 |
| MaeII | ACGT | 1 cut(s) | 1779 |
| MaeIII | GTNAC | 5 cut(s) | 215, 581, 645, 1721, 1822 |
| MflI | RGATCY | 2 cut(s) | 2026, 2273 |
| MhlI | GDGCHC | 5 cut(s) | 461, 693, 999, 1719, 1803 |
| MlsI | TGGCCA | 1 cut(s) | 1790 |
| MluCI | AATT | 7 cut(s) | 223, 272, 470, 1082, 1335, 1434, 1653 |
| MluI | ACGCGT | 1 cut(s) | 539 |
| MluNI | TGGCCA | 1 cut(s) | 1790 |
| MlyI | GAGTC | 2 cut(s) | 335, 1969 |
| MmeI | TCCRAC | 2 cut(s) | 228, 1281 |
| Mox20I | TGGCCA | 1 cut(s) | 1790 |
| MroI | TCCGGA | 1 cut(s) | 685 |
| MscI | TGGCCA | 1 cut(s) | 1790 |
| MseI | TTAA | 3 cut(s) | 1437, 1479, 2099 |
| MslI | CAYNNNNRTG | 3 cut(s) | 100, 464, 2192 |
| Msp20I | TGGCCA | 1 cut(s) | 1790 |
| MspA1I | CMGCKG | 2 cut(s) | 1187, 1661 |
| MspI | CCGG | 4 cut(s) | 455, 686, 1851, 2117 |
| MspR9I | CCNGG | 4 cut(s) | 268, 456, 1792, 2265 |
| MvaI | CCWGG | 3 cut(s) | 268, 1792, 2265 |
| MvnI | CGCG | 2 cut(s) | 291, 541 |
| NciI | CCSGG | 1 cut(s) | 456 |
| NcoI | CCATGG | 1 cut(s) | 1176 |
| NdeI | CATATG | 1 cut(s) | 613 |
| NlaIII | CATG | 8 cut(s) | 155, 832, 853, 1180, 1579, 1897, 1985, 2065 |
| NlaIV | GGNNCC | 7 cut(s) | 230, 409, 477, 572, 1540, 1800, 2028 |
| NmeAIII | GCCGAG | 1 cut(s) | 1878 |
| NmuCI | GTSAC | 3 cut(s) | 645, 1721, 1822 |
| NspI | RCATGY | 1 cut(s) | 1897 |
| PaeI | GCATGC | 1 cut(s) | 1897 |
| PaeR7I | CTCGAG | 3 cut(s) | 526, 992, 2269 |
| PfeI | GAWTC | 7 cut(s) | 435, 704, 779, 845, 1203, 1230, 1364 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 238 |
| PleI | GAGTC | 2 cut(s) | 335, 1969 |
| PpsI | GAGTC | 2 cut(s) | 335, 1969 |
| PshAI | GACNNNNGTC | 1 cut(s) | 934 |
| Psp124BI | GAGCTC | 2 cut(s) | 693, 999 |
| Psp6I | CCWGG | 3 cut(s) | 266, 1790, 2263 |
| PspFI | CCCAGC | 2 cut(s) | 737, 2220 |
| PspGI | CCWGG | 3 cut(s) | 266, 1790, 2263 |
| PspN4I | GGNNCC | 7 cut(s) | 230, 409, 477, 572, 1540, 1800, 2028 |
| PspPI | GGNCC | 7 cut(s) | 229, 665, 735, 1394, 1539, 2119, 2261 |
| PspXI | VCTCGAGB | 1 cut(s) | 992 |
| PstI | CTGCAG | 1 cut(s) | 2244 |
| PstNI | CAGNNNCTG | 2 cut(s) | 47, 1814 |
| PsuI | RGATCY | 2 cut(s) | 2026, 2273 |
| PvuII | CAGCTG | 2 cut(s) | 1187, 1661 |
| RsaI | GTAC | 7 cut(s) | 333, 1024, 1313, 1497, 1574, 1880, 1919 |
| RsaNI | GTAC | 7 cut(s) | 332, 1023, 1312, 1496, 1573, 1879, 1918 |
| RseI | CAYNNNNRTG | 3 cut(s) | 100, 464, 2192 |
| SacI | GAGCTC | 2 cut(s) | 693, 999 |
| SaqAI | TTAA | 3 cut(s) | 1437, 1479, 2099 |
| Sau96I | GGNCC | 7 cut(s) | 229, 665, 735, 1394, 1539, 2119, 2261 |
| ScaI | AGTACT | 2 cut(s) | 1024, 1497 |
| SchI | GAGTC | 2 cut(s) | 335, 1969 |
| ScrFI | CCNGG | 4 cut(s) | 268, 456, 1792, 2265 |
| SduI | GDGCHC | 5 cut(s) | 461, 693, 999, 1719, 1803 |
| SfaNI | GCATC | 3 cut(s) | 759, 1444, 1522 |
| SfcI | CTRYAG | 1 cut(s) | 2240 |
| Sfr274I | CTCGAG | 3 cut(s) | 526, 992, 2269 |
| SinI | GGWCC | 5 cut(s) | 229, 665, 1394, 2119, 2261 |
| SlaI | CTCGAG | 3 cut(s) | 526, 992, 2269 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 100, 464, 2192 |
| SmlI | CTYRAG | 5 cut(s) | 526, 992, 998, 1461, 2269 |
| SmoI | CTYRAG | 5 cut(s) | 526, 992, 998, 1461, 2269 |
| SphI | GCATGC | 1 cut(s) | 1897 |
| Sse9I | AATT | 7 cut(s) | 223, 272, 470, 1082, 1335, 1434, 1653 |
| SsiI | CCGC | 4 cut(s) | 423, 748, 797, 1600 |
| SspMI | CTAG | 5 cut(s) | 335, 657, 1197, 1415, 2246 |
| SstI | GAGCTC | 2 cut(s) | 693, 999 |
| StyD4I | CCNGG | 4 cut(s) | 266, 454, 1790, 2263 |
| StyI | CCWWGG | 3 cut(s) | 1176, 1534, 2122 |
| TaaI | ACNGT | 8 cut(s) | 463, 1116, 1299, 1476, 1622, 1721, 1830, 2207 |
| TaiI | ACGT | 1 cut(s) | 1782 |
| TasI | AATT | 7 cut(s) | 223, 272, 470, 1082, 1335, 1434, 1653 |
| TatI | WGTACW | 4 cut(s) | 1022, 1495, 1572, 1917 |
| TfiI | GAWTC | 7 cut(s) | 435, 704, 779, 845, 1203, 1230, 1364 |
| Tru1I | TTAA | 3 cut(s) | 1437, 1479, 2099 |
| Tru9I | TTAA | 3 cut(s) | 1437, 1479, 2099 |
| TscAI | CASTG | 8 cut(s) | 66, 102, 466, 1291, 1678, 1815, 2196, 2244 |
| TseFI | GTSAC | 3 cut(s) | 645, 1721, 1822 |
| Tsp45I | GTSAC | 3 cut(s) | 645, 1721, 1822 |
| TspDTI | ATGAA | 6 cut(s) | 482, 650, 845, 866, 1259, 2078 |
| TspGWI | ACGGA | 1 cut(s) | 583 |
| TspRI | CASTG | 8 cut(s) | 66, 102, 466, 1291, 1678, 1815, 2196, 2244 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 238 |
| VneI | GTGCAC | 1 cut(s) | 1715 |
| VpaK11BI | GGWCC | 5 cut(s) | 229, 665, 1394, 2119, 2261 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2126 |
| XbaI | TCTAGA | 1 cut(s) | 1414 |
| XceI | RCATGY | 1 cut(s) | 1897 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1174, 1632, 1963 |
| XhoI | CTCGAG | 3 cut(s) | 526, 992, 2269 |
| XmiI | GTMKAC | 1 cut(s) | 618 |
| XspI | CTAG | 5 cut(s) | 335, 657, 1197, 1415, 2246 |
| ZrmI | AGTACT | 2 cut(s) | 1024, 1497 |