Rroxscaffold_7G00162990

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010645
Physical Location & Seq
Forward (+)
5320806 .. 5341947
21142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162990.1

Sequence Viewer

Length: 651 bp
ATGATGCAAAGCGTGAAGGTACGTGGAAAACTTGAAGAGCTTCTGGCACATCAAGGAAGAAAGTATCTCATGTCTAGGGATGGTAGAGAGAGTAAAATGGATCTGCCTCCCGCAGGTGAGGAAGAGATTCCCGCTTTGGTTTTAATTGGACCAGACGGAAAGGCTGTTAGCACAAAGGGGAGGGCTTTGATCTCTTTGCATGGCGCAAAAGCTTTCCCATTTACAGAGTTGAGGATCAAAGAGGTCGAAACAGCCTTGGGAAAAGGAGAGGCATTGCCTCCTCAAATACAATGCAAAGACATCGTACTAGAAGACTCGGATGTAGCTAAAGCATTGATCGAATACACTACCCAAAGTGCAATCGAGCATTTGGTTGTTGGTGCCTCATCAAAAAGCGGTTTTCTTAGATTCAAACAATCAGATATTCCGGGCACTGTAATGAAATTGGCCCCAGATTTTTGTAATGTATATATCATATCGAAAGGAAAACCTCATTCCTCGAGAGCTGCCACGCGTCCAGCTCCAGCCATCTCACCTTTACGGAACCAAGTTCGTAACCAAATCAACAGCACAAAATCAGAGCCATATGTCTACCCTCCTAATAATATGAAAGGTAAGTACACTGTATCTTACGTACTGAGAGTACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Usp

Protein Analysis

216

Amino Acids

23.66

Weight (kDa)

9.52

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24370 AT4G31230 AT4G31230
fragaria_vesca FvH4_2g36560 FvH4_2g36560
malus_domestica MD15G1105300.v1.1
prunus_persica Prupe.1G457100_v2.0.a1
pyrus_communis pycom08g10450
rosa_chinensis RchiOBHm_Chr6g0305261
rosa_laevigata RLG00000010904
rosa_multiflora Rmu_ssc0000276.1_g000006
rosa_roxburghii Rroxscaffold_7G00162990 Rroxscaffold_7G00163000
rosa_rugosa Rorug06G0339100 Rorug06G0339200
rosa_samantha Rh6AG450700 Rh6BG450700 Rh6CG464800 Rh6DG451400
rosa_wichuraiana Rw6G039280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 104
Acc36I ACCTGC 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 380
AccI GTMKAC 1 cut(s) 591
AccII CGCG 1 cut(s) 514
AciI CCGC 3 cut(s) 111, 132, 396
AclWI GGATC 2 cut(s) 108, 242
AfaI GTAC 5 cut(s) 21, 306, 620, 636, 645
AfiI CCNNNNNNNGG 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 512
AgsI TTSAA 2 cut(s) 35, 412
AluBI AGCT 5 cut(s) 40, 212, 326, 506, 521
AluI AGCT 5 cut(s) 40, 212, 326, 506, 521
AlwI GGATC 2 cut(s) 108, 242
Ama87I CYCGRG 1 cut(s) 499
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 1 cut(s) 506
Asp700I GAANNNNTTC 2 cut(s) 39, 126
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 2 cut(s) 149, 448
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 2 cut(s) 128, 525
AvaI CYCGRG 1 cut(s) 499
AvaII GGWCC 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 434
BanI GGYRCC 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 493
BccI CCATC 2 cut(s) 74, 536
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BcnI CCSGG 1 cut(s) 429
BfaI CTAG 2 cut(s) 75, 308
BfuAI ACCTGC 1 cut(s) 104
BisI GCNGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 508
Bme1390I CCNGG 1 cut(s) 429
Bme18I GGWCC 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 499
BmgT120I GGNCC 2 cut(s) 149, 448
BmiI GGNNCC 3 cut(s) 382, 450, 545
BmrFI CCNGG 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 429
BsaAI YACGTR 2 cut(s) 23, 634
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 85, 325
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMI GCAATG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 629
BseRI GAGGAG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 434
BseXI GCAGC 1 cut(s) 493
Bsh1236I CGCG 1 cut(s) 514
BshFI GGCC 1 cut(s) 449
BshNI GGYRCC 1 cut(s) 380
BsiHKCI CYCGRG 1 cut(s) 499
BsiSI CCGG 1 cut(s) 428
BslI CCNNNNNNNGG 1 cut(s) 113
BsnI GGCC 1 cut(s) 449
BsoBI CYCGRG 1 cut(s) 499
Bsp1286I GDGCHC 1 cut(s) 434
Bsp143I GATC 4 cut(s) 100, 189, 234, 336
BspACI CCGC 3 cut(s) 111, 132, 396
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 1 cut(s) 630
BspFNI CGCG 1 cut(s) 514
BspLI GGNNCC 3 cut(s) 382, 450, 545
BspMI ACCTGC 1 cut(s) 104
BspPI GGATC 2 cut(s) 108, 242
BspQI GCTCTTC 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 4 cut(s) 100, 189, 234, 336
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 436, 625
Bst6I CTCTTC 2 cut(s) 30, 117
BstBAI YACGTR 2 cut(s) 23, 634
BstDEI CTNAG 3 cut(s) 404, 638, 648
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 85, 325
BstFNI CGCG 1 cut(s) 514
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 4 cut(s) 103, 192, 237, 339
BstMBI GATC 4 cut(s) 100, 189, 234, 336
BstSCI CCNGG 1 cut(s) 427
BstSLI GKGCMC 1 cut(s) 434
BstSNI TACGTA 1 cut(s) 634
BstUI CGCG 1 cut(s) 514
BstV1I GCAGC 1 cut(s) 493
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 1 cut(s) 449
BtsCI GGATG 2 cut(s) 85, 325
BtsIMutI CAGTG 2 cut(s) 432, 621
BveI ACCTGC 1 cut(s) 104
CfoI GCGC 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 149, 448
CseI GACGC 1 cut(s) 503
Csp6I GTAC 5 cut(s) 20, 305, 619, 635, 644
CviAII CATG 2 cut(s) 70, 200
CviQI GTAC 5 cut(s) 20, 305, 619, 635, 644
DdeI CTNAG 3 cut(s) 404, 638, 648
DpnI GATC 4 cut(s) 102, 191, 236, 338
DpnII GATC 4 cut(s) 100, 189, 234, 336
Eam1104I CTCTTC 2 cut(s) 30, 117
EarI CTCTTC 2 cut(s) 30, 117
Eco105I TACGTA 1 cut(s) 634
Eco130I CCWWGG 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 499
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 2 cut(s) 73, 203
FaiI YATR 8 cut(s) 71, 201, 469, 471, 476, 586, 588, 608
FatI CATG 2 cut(s) 69, 199
FauI CCCGC 2 cut(s) 118, 139
FauNDI CATATG 1 cut(s) 586
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 1 cut(s) 507
FokI GGATG 2 cut(s) 92, 332
Fsp4HI GCNGC 1 cut(s) 507
FspBI CTAG 2 cut(s) 75, 308
GlaI GCGC 1 cut(s) 205
GluI GCNGC 1 cut(s) 507
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 1 cut(s) 449
HapII CCGG 1 cut(s) 428
HgaI GACGC 1 cut(s) 503
HhaI GCGC 1 cut(s) 206
Hin1II CATG 2 cut(s) 73, 203
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 3 cut(s) 127, 314, 408
HpaII CCGG 1 cut(s) 428
HphI GGTGA 2 cut(s) 128, 525
Hpy166II GTNNAC 2 cut(s) 592, 621
Hpy188I TCNGA 3 cut(s) 319, 421, 580
Hpy188III TCNNGA 1 cut(s) 501
Hpy8I GTNNAC 2 cut(s) 592, 621
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 2 cut(s) 436, 625
HpyCH4IV ACGT 2 cut(s) 22, 633
HpyCH4V TGCA 4 cut(s) 7, 199, 294, 359
HpyF3I CTNAG 3 cut(s) 404, 638, 648
HpySE526I ACGT 2 cut(s) 22, 633
Hsp92II CATG 2 cut(s) 73, 203
HspAI GCGC 1 cut(s) 204
Kzo9I GATC 4 cut(s) 100, 189, 234, 336
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 526
LpnPI CCDG 7 cut(s) 29, 99, 165, 441, 465, 531, 537
Lsp1109I GCAGC 1 cut(s) 493
MaeI CTAG 2 cut(s) 75, 308
MaeII ACGT 2 cut(s) 22, 633
MaeIII GTNAC 1 cut(s) 554
MalI GATC 4 cut(s) 102, 191, 236, 338
MboI GATC 4 cut(s) 100, 189, 234, 336
MboII GAAGA 4 cut(s) 47, 69, 134, 323
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 434
MluCI AATT 2 cut(s) 144, 443
MluI ACGCGT 1 cut(s) 512
MlyI GAGTC 1 cut(s) 308
MroXI GAANNNNTTC 2 cut(s) 39, 126
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 437
MspI CCGG 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 429
MvnI CGCG 1 cut(s) 514
NciI CCSGG 1 cut(s) 429
NdeI CATATG 1 cut(s) 586
NdeII GATC 4 cut(s) 100, 189, 234, 336
NlaIII CATG 2 cut(s) 73, 203
NlaIV GGNNCC 3 cut(s) 382, 450, 545
PaeR7I CTCGAG 1 cut(s) 499
PaqCI CACCTGC 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 30
PdmI GAANNNNTTC 2 cut(s) 39, 126
PfeI GAWTC 2 cut(s) 127, 408
PkrI GCNGC 1 cut(s) 508
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
Ppu21I YACGTR 2 cut(s) 23, 634
PspN4I GGNNCC 3 cut(s) 382, 450, 545
PspPI GGNCC 2 cut(s) 149, 448
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 5 cut(s) 21, 306, 620, 636, 645
RsaNI GTAC 5 cut(s) 20, 305, 619, 635, 644
RseI CAYNNNNRTG 1 cut(s) 437
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 1 cut(s) 507
Sau3AI GATC 4 cut(s) 100, 189, 234, 336
Sau96I GGNCC 2 cut(s) 149, 448
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 434
Sfr274I CTCGAG 1 cut(s) 499
SinI GGWCC 1 cut(s) 149
SlaI CTCGAG 1 cut(s) 499
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
SnaBI TACGTA 1 cut(s) 634
Sse9I AATT 2 cut(s) 144, 443
SsiI CCGC 3 cut(s) 111, 132, 396
SspMI CTAG 2 cut(s) 75, 308
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 2 cut(s) 436, 625
TaiI ACGT 2 cut(s) 25, 636
TaqI TCGA 5 cut(s) 246, 339, 363, 479, 500
TasI AATT 2 cut(s) 144, 443
TatI WGTACW 1 cut(s) 618
TfiI GAWTC 2 cut(s) 127, 408
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 2 cut(s) 439, 628
TseI GCWGC 1 cut(s) 506
TspDTI ATGAA 2 cut(s) 455, 623
TspGWI ACGGA 2 cut(s) 171, 556
TspRI CASTG 2 cut(s) 439, 628
VpaK11BI GGWCC 1 cut(s) 149
XagI CCTNNNNNAGG 1 cut(s) 111
XhoI CTCGAG 1 cut(s) 499
XmiI GTMKAC 1 cut(s) 591
XmnI GAANNNNTTC 2 cut(s) 39, 126
XspI CTAG 2 cut(s) 75, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.