Rorug06G0339100

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010645
Physical Location & Seq
Forward (+)
49069391 .. 49071894
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0339100.1

Sequence Viewer

Length: 1413 bp
ATGACTGGGCTTGTAATGGTGACGAGGGGAGGAGGGTGCGGTGGTAATTTGAAAGGGGTCAAAGGAGGGTCAACGAAGGAGGAGGAGCAGAACCAGCTCTCTCTGGTGGACTTTCTCTTGTCTGCTATAAGGAAATCCATGGTGGCTTGCCGGGTTGAGCAAGGTGAGGAAATGATCTCGGCCGTCCAGAACTTGGACATCGGGTGGCCCACCAATGTCCGGCACATTACGCATGTCACATTCGACCGCTTCAATGGGTTTCTGGGACTTCCTGTTGAGTTTGAGGTTGAGATTCCTGGTCGTGTTCCGAGTGCCAGTGCAAGTGTGTTTGGAGTCTCAGTGGATTCAATGCAGCTGTCCTTCGATTCAAAAGGGAATAGTGTGCCTACAATTCTGCTTCTAATGCAGGAGAGGTTATACGCACAAGGAGGATTGAAGGCTGAAGGAATATTTCGTATAAACCCAGAGAATGGCCAAGAGGAGATTGTGAGAGGCCAATTGAACAGGGGCATTGTGCCGGATGACGTTGATGTTCATTGTTTGTCTGGTCTGATTAAGGCCTGGTTTCGAGAGCTTCCTTCAGGAGTGCTAGATGGACTATCCCCCGAACAAGTTCTTCAGTGTGAGACAGAAGAGGACTGCGTTGAGCTTGTGAAGCAGTTAAAGCCAACTGAGGCTGCATTGCTCAATTGGGCTATTGATCTGATGGCCGATGTTGTTGAGGAAGAAGAATTCAACAAGATGAATGCAAGAAACATCGCTATGGTTTTTGCCCCAAACATGACTCAGATGTCTGATCCATTAACGGCTTTGATGCATGCGGTTCAAGTAATGAATTTGCTTAAGACCCTGATCACGAAAACACTAAATGAGCGTGAAGAGACTGAAAGCGGATCATATTCACAGTCACCAATGTCATCTTGTTCATCTGAGGGTCAAACAGATGACTTTGATAGTCAGCACGAGGTTGAAAGCAGCTCCGCGTTAATCAAGACTTCACCAACATCAGATTATGATGAAAATGGCAGCATCAGCAACAACAGTGAAGATGAATCTGAAGTCAAATTACTGAATGACATAGAAGAATGCTTACGACAATTGGATGAGAATAAACTTTCAACAAATAGCTTGGTAATGTTGGGTGAACTAACATGCGAGTTGCAAGGTGAGTCTTTCAGTCCTCAGTGCTGCTCTAATGTGGAGTCCGCCACATCCTTTACTGATAGCAAAAATAGGGATTCTGGCTCGAGTACAAGTGACGGGGAAGAAGAAGACACTGCGAAATCTATCATAGCTGTGGCACAGGACTCTGATATTAAAAACCATAGAAGCATAAATGAAATGGAGATGGTGGACAGATCTGTGGAGTCTGTTTTGCCTATGCCATTGACTGCATCTACTGGATCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Usp

Protein Analysis

470

Amino Acids

51.25

Weight (kDa)

4.37

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RhoGAP PF00620 129 - 263 4.9e-19 RhoGAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24370 AT4G31230 AT4G31230
fragaria_vesca FvH4_2g36560 FvH4_2g36560
malus_domestica MD15G1105300.v1.1
prunus_persica Prupe.1G457100_v2.0.a1
pyrus_communis pycom08g10450
rosa_chinensis RchiOBHm_Chr6g0305261
rosa_laevigata RLG00000010904
rosa_multiflora Rmu_ssc0000276.1_g000006
rosa_roxburghii Rroxscaffold_7G00162990 Rroxscaffold_7G00163000
rosa_rugosa Rorug06G0339100 Rorug06G0339200
rosa_samantha Rh6AG450700 Rh6BG450700 Rh6CG464800 Rh6DG451400
rosa_wichuraiana Rw6G039280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 790
AccB7I CCANNNNNTGG 2 cut(s) 193, 470
AccII CGCG 1 cut(s) 983
AciI CCGC 6 cut(s) 39, 247, 821, 891, 981, 1206
AclWI GGATC 3 cut(s) 791, 901, 1411
AcoI YGGCCR 3 cut(s) 180, 472, 708
AcsI RAATTY 2 cut(s) 731, 835
AcuI CTGAAG 4 cut(s) 462, 564, 602, 1077
AfaI GTAC 1 cut(s) 1252
AfiI CCNNNNNNNGG 3 cut(s) 193, 219, 470
AflII CTTAAG 1 cut(s) 842
AjnI CCWGG 2 cut(s) 295, 560
AluBI AGCT 7 cut(s) 97, 355, 574, 649, 978, 1128, 1295
AluI AGCT 7 cut(s) 97, 355, 574, 649, 978, 1128, 1295
Alw26I GTCTC 3 cut(s) 340, 620, 875
AlwI GGATC 3 cut(s) 791, 901, 1411
Ama87I CYCGRG 1 cut(s) 1246
AoxI GGCC 6 cut(s) 180, 206, 472, 493, 558, 708
ApeKI GCWGC 5 cut(s) 352, 677, 975, 1026, 1188
ApoI RAATTY 2 cut(s) 731, 835
Asp700I GAANNNNTTC 1 cut(s) 612
AspS9I GGNCC 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 6 cut(s) 31, 176, 900, 990, 1154, 1178
AvaI CYCGRG 1 cut(s) 1246
BalI TGGCCA 1 cut(s) 474
BarI GAAGNNNNNNTAC 4 cut(s) 1050, 1074, 1082, 1106
BauI CACGAG 1 cut(s) 962
BbsI GAAGAC 1 cut(s) 1278
BbvI GCAGC 5 cut(s) 364, 664, 987, 1038, 1175
BccI CCATC 3 cut(s) 587, 700, 1342
BceAI ACGGC 2 cut(s) 167, 822
BciT130I CCWGG 2 cut(s) 297, 562
BclI TGATCA 1 cut(s) 852
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 3 cut(s) 340, 620, 875
BfaI CTAG 1 cut(s) 590
BfrI CTTAAG 1 cut(s) 842
BglII AGATCT 1 cut(s) 1358
BisI GCNGC 5 cut(s) 353, 678, 976, 1027, 1189
BlsI GCNGC 5 cut(s) 354, 679, 977, 1028, 1190
Bme1390I CCNGG 3 cut(s) 152, 297, 562
BmeT110I CYCGRG 1 cut(s) 1246
BmgT120I GGNCC 1 cut(s) 207
BmrFI CCNGG 3 cut(s) 152, 297, 562
BmrI ACTGGG 1 cut(s) 15
BmsI GCATC 3 cut(s) 804, 1038, 1403
BmuI ACTGGG 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 1278
BpuMI CCSGG 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 219, 470
Bse1I ACTGG 3 cut(s) 10, 315, 1405
Bse3DI GCAATG 1 cut(s) 680
BseBI CCWGG 2 cut(s) 297, 562
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 3 cut(s) 526, 1108, 1211
BseLI CCNNNNNNNGG 3 cut(s) 193, 219, 470
BseMI GCAATG 1 cut(s) 680
BseMII CTCAG 5 cut(s) 351, 663, 800, 921, 1196
BseNI ACTGG 3 cut(s) 10, 315, 1405
BseRI GAGGAG 4 cut(s) 45, 95, 98, 494
BseX3I CGGCCG 1 cut(s) 180
BseXI GCAGC 5 cut(s) 364, 664, 987, 1038, 1175
Bsh1236I CGCG 1 cut(s) 983
Bsh1285I CGRYCG 2 cut(s) 183, 247
BshFI GGCC 6 cut(s) 182, 208, 474, 495, 560, 710
BsiEI CGRYCG 2 cut(s) 183, 247
BsiHKCI CYCGRG 1 cut(s) 1246
BsiSI CCGG 3 cut(s) 151, 220, 518
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 3 cut(s) 193, 219, 470
BsmAI GTCTC 3 cut(s) 340, 620, 875
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 2 cut(s) 751, 1091
BsnI GGCC 6 cut(s) 182, 208, 474, 495, 560, 710
BsoBI CYCGRG 1 cut(s) 1246
Bsp143I GATC 7 cut(s) 174, 700, 796, 852, 893, 1358, 1403
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 6 cut(s) 39, 247, 821, 891, 981, 1206
BspANI GGCC 6 cut(s) 182, 208, 474, 495, 560, 710
BspCNI CTCAG 5 cut(s) 350, 664, 799, 922, 1195
BspFNI CGCG 1 cut(s) 983
BspPI GGATC 3 cut(s) 791, 901, 1411
BspTI CTTAAG 1 cut(s) 842
BsrDI GCAATG 1 cut(s) 680
BsrI ACTGG 3 cut(s) 10, 315, 1405
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 7 cut(s) 174, 700, 796, 852, 893, 1358, 1403
BssSI CACGAG 1 cut(s) 962
BssT1I CCWWGG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 962
Bst2UI CCWGG 2 cut(s) 297, 562
Bst4CI ACNGT 2 cut(s) 906, 1043
Bst6I CTCTTC 2 cut(s) 627, 873
BstAFI CTTAAG 1 cut(s) 842
BstC8I GCNNGC 2 cut(s) 148, 819
BstDEI CTNAG 5 cut(s) 337, 672, 786, 930, 1182
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 3 cut(s) 526, 1108, 1211
BstFNI CGCG 1 cut(s) 983
BstKTI GATC 7 cut(s) 177, 703, 799, 855, 896, 1361, 1406
BstMAI GTCTC 3 cut(s) 340, 620, 875
BstMBI GATC 7 cut(s) 174, 700, 796, 852, 893, 1358, 1403
BstMCI CGRYCG 2 cut(s) 183, 247
BstMWI GCNNNNNNNGC 6 cut(s) 94, 229, 403, 655, 664, 1032
BstNI CCWGG 2 cut(s) 297, 562
BstNSI RCATGY 3 cut(s) 236, 821, 1155
BstSCI CCNGG 3 cut(s) 150, 295, 560
BstUI CGCG 1 cut(s) 983
BstV1I GCAGC 5 cut(s) 364, 664, 987, 1038, 1175
BstV2I GAAGAC 1 cut(s) 1278
BstX2I RGATCY 2 cut(s) 1358, 1403
BstYI RGATCY 2 cut(s) 1358, 1403
BstZI CGGCCG 1 cut(s) 180
BsuRI GGCC 6 cut(s) 182, 208, 474, 495, 560, 710
BtgI CCRYGG 1 cut(s) 138
BtgZI GCGATG 1 cut(s) 742
BtsCI GGATG 3 cut(s) 526, 1108, 1211
BtsI GCAGTG 1 cut(s) 1275
BtsIMutI CAGTG 6 cut(s) 322, 345, 626, 1048, 1190, 1275
Cac8I GCNNGC 2 cut(s) 148, 819
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 1251
CviAII CATG 5 cut(s) 139, 233, 781, 818, 1152
CviQI GTAC 1 cut(s) 1251
DdeI CTNAG 5 cut(s) 337, 672, 786, 930, 1182
DpnI GATC 7 cut(s) 176, 702, 798, 854, 895, 1360, 1405
DpnII GATC 7 cut(s) 174, 700, 796, 852, 893, 1358, 1403
DrdI GACNNNNNNGTC 1 cut(s) 790
DseDI GACNNNNNNGTC 1 cut(s) 790
EaeI YGGCCR 3 cut(s) 180, 472, 708
EagI CGGCCG 1 cut(s) 180
Eam1104I CTCTTC 2 cut(s) 627, 873
EarI CTCTTC 2 cut(s) 627, 873
EciI GGCGGA 1 cut(s) 1195
EclXI CGGCCG 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 138
Eco147I AGGCCT 1 cut(s) 560
Eco52I CGGCCG 1 cut(s) 180
Eco57I CTGAAG 4 cut(s) 462, 564, 602, 1077
Eco88I CYCGRG 1 cut(s) 1246
EcoRI GAATTC 1 cut(s) 731
EcoRII CCWGG 2 cut(s) 295, 560
EcoT14I CCWWGG 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 819
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 5 cut(s) 142, 236, 784, 821, 1155
FaqI GGGAC 1 cut(s) 279
FatI CATG 5 cut(s) 138, 232, 780, 817, 1151
FbaI TGATCA 1 cut(s) 852
Fnu4HI GCNGC 5 cut(s) 353, 678, 976, 1027, 1189
FokI GGATG 3 cut(s) 533, 1115, 1198
Fsp4HI GCNGC 5 cut(s) 353, 678, 976, 1027, 1189
FspBI CTAG 1 cut(s) 590
GluI GCNGC 5 cut(s) 353, 678, 976, 1027, 1189
HaeIII GGCC 6 cut(s) 182, 208, 474, 495, 560, 710
HapII CCGG 3 cut(s) 151, 220, 518
Hin1II CATG 5 cut(s) 142, 236, 784, 821, 1155
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HpaII CCGG 3 cut(s) 151, 220, 518
HphI GGTGA 6 cut(s) 31, 176, 900, 990, 1154, 1178
Hpy166II GTNNAC 4 cut(s) 72, 109, 1145, 1354
Hpy188I TCNGA 9 cut(s) 309, 552, 705, 789, 796, 931, 1009, 1057, 1312
Hpy188III TCNNGA 5 cut(s) 187, 569, 582, 856, 991
Hpy8I GTNNAC 4 cut(s) 72, 109, 1145, 1354
HpyAV CCTTC 5 cut(s) 70, 370, 430, 437, 588
HpyCH4III ACNGT 2 cut(s) 906, 1043
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 8 cut(s) 320, 352, 406, 680, 749, 817, 1162, 1394
HpyF10VI GCNNNNNNNGC 6 cut(s) 94, 229, 403, 655, 664, 1032
HpyF3I CTNAG 5 cut(s) 337, 672, 786, 930, 1182
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 5 cut(s) 142, 236, 784, 821, 1155
Ksp22I TGATCA 1 cut(s) 852
Kzo9I GATC 7 cut(s) 174, 700, 796, 852, 893, 1358, 1403
LmnI GCTCC 2 cut(s) 85, 983
Lsp1109I GCAGC 5 cut(s) 364, 664, 987, 1038, 1175
LweI GCATC 3 cut(s) 804, 1038, 1403
MaeI CTAG 1 cut(s) 590
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 4 cut(s) 19, 235, 906, 1256
MalI GATC 7 cut(s) 176, 702, 798, 854, 895, 1360, 1405
MboI GATC 7 cut(s) 174, 700, 796, 852, 893, 1358, 1403
MfeI CAATTG 3 cut(s) 497, 688, 1097
MflI RGATCY 2 cut(s) 1358, 1403
MlsI TGGCCA 1 cut(s) 474
MluCI AATT 8 cut(s) 46, 390, 497, 688, 731, 835, 1064, 1097
MluNI TGGCCA 1 cut(s) 474
MlyI GAGTC 6 cut(s) 342, 778, 1178, 1211, 1301, 1376
Mox20I TGGCCA 1 cut(s) 474
Mph1103I ATGCAT 1 cut(s) 819
MroXI GAANNNNTTC 1 cut(s) 612
MscI TGGCCA 1 cut(s) 474
MseI TTAA 6 cut(s) 555, 662, 803, 843, 986, 1317
MslI CAYNNNNRTG 2 cut(s) 761, 1295
Msp20I TGGCCA 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 355
MspCI CTTAAG 1 cut(s) 842
MspI CCGG 3 cut(s) 151, 220, 518
MspR9I CCNGG 3 cut(s) 152, 297, 562
MunI CAATTG 3 cut(s) 497, 688, 1097
Mva1269I GAATGC 2 cut(s) 751, 1091
MvaI CCWGG 2 cut(s) 297, 562
MvnI CGCG 1 cut(s) 983
MwoI GCNNNNNNNGC 6 cut(s) 94, 229, 403, 655, 664, 1032
NciI CCSGG 1 cut(s) 152
NcoI CCATGG 1 cut(s) 138
NdeII GATC 7 cut(s) 174, 700, 796, 852, 893, 1358, 1403
NlaIII CATG 5 cut(s) 142, 236, 784, 821, 1155
NmeAIII GCCGAG 1 cut(s) 158
NmuCI GTSAC 4 cut(s) 19, 235, 906, 1256
NsiI ATGCAT 1 cut(s) 819
NspI RCATGY 3 cut(s) 236, 821, 1155
PaeI GCATGC 1 cut(s) 821
PaeR7I CTCGAG 1 cut(s) 1246
PceI AGGCCT 1 cut(s) 560
PctI GAATGC 2 cut(s) 751, 1091
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 5 cut(s) 292, 344, 365, 1052, 1238
PflMI CCANNNNNTGG 2 cut(s) 193, 470
PkrI GCNGC 5 cut(s) 354, 679, 977, 1028, 1190
PleI GAGTC 6 cut(s) 341, 778, 1177, 1210, 1301, 1375
PpsI GAGTC 6 cut(s) 341, 778, 1177, 1210, 1301, 1375
Psp6I CCWGG 2 cut(s) 295, 560
PspGI CCWGG 2 cut(s) 295, 560
PspPI GGNCC 1 cut(s) 207
PspXI VCTCGAGB 1 cut(s) 1246
PsuI RGATCY 2 cut(s) 1358, 1403
PvuII CAGCTG 1 cut(s) 355
RsaI GTAC 1 cut(s) 1252
RsaNI GTAC 1 cut(s) 1251
RseI CAYNNNNRTG 2 cut(s) 761, 1295
SaqAI TTAA 6 cut(s) 555, 662, 803, 843, 986, 1317
SatI GCNGC 5 cut(s) 353, 678, 976, 1027, 1189
Sau3AI GATC 7 cut(s) 174, 700, 796, 852, 893, 1358, 1403
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 6 cut(s) 342, 778, 1178, 1211, 1301, 1376
ScrFI CCNGG 3 cut(s) 152, 297, 562
SfaNI GCATC 3 cut(s) 804, 1038, 1403
Sfr274I CTCGAG 1 cut(s) 1246
SlaI CTCGAG 1 cut(s) 1246
SmiMI CAYNNNNRTG 2 cut(s) 761, 1295
SmlI CTYRAG 2 cut(s) 842, 1246
SmoI CTYRAG 2 cut(s) 842, 1246
SphI GCATGC 1 cut(s) 821
Sse9I AATT 8 cut(s) 46, 390, 497, 688, 731, 835, 1064, 1097
SseBI AGGCCT 1 cut(s) 560
SsiI CCGC 6 cut(s) 39, 247, 821, 891, 981, 1206
SspI AATATT 1 cut(s) 450
SspMI CTAG 1 cut(s) 590
StuI AGGCCT 1 cut(s) 560
StyD4I CCNGG 3 cut(s) 150, 295, 560
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 2 cut(s) 906, 1043
TaiI ACGT 1 cut(s) 528
TaqI TCGA 4 cut(s) 243, 363, 568, 1247
TasI AATT 8 cut(s) 46, 390, 497, 688, 731, 835, 1064, 1097
TatI WGTACW 1 cut(s) 1250
TfiI GAWTC 5 cut(s) 292, 344, 365, 1052, 1238
Tru1I TTAA 6 cut(s) 555, 662, 803, 843, 986, 1317
Tru9I TTAA 6 cut(s) 555, 662, 803, 843, 986, 1317
TscAI CASTG 6 cut(s) 322, 345, 626, 1048, 1190, 1282
TseFI GTSAC 4 cut(s) 19, 235, 906, 1256
TseI GCWGC 5 cut(s) 352, 677, 975, 1026, 1188
Tsp45I GTSAC 4 cut(s) 19, 235, 906, 1256
TspDTI ATGAA 7 cut(s) 524, 758, 848, 915, 1032, 1065, 1353
TspRI CASTG 6 cut(s) 322, 345, 626, 1048, 1190, 1282
Van91I CCANNNNNTGG 2 cut(s) 193, 470
Vha464I CTTAAG 1 cut(s) 842
XapI RAATTY 2 cut(s) 731, 835
XceI RCATGY 3 cut(s) 236, 821, 1155
XhoI CTCGAG 1 cut(s) 1246
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 1 cut(s) 590
Zsp2I ATGCAT 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.