U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24370 AT4G31230 AT4G31230 |
| fragaria_vesca | FvH4_2g36560 FvH4_2g36560 |
| malus_domestica | MD15G1105300.v1.1 |
| prunus_persica | Prupe.1G457100_v2.0.a1 |
| pyrus_communis | pycom08g10450 |
| rosa_chinensis | RchiOBHm_Chr6g0305261 |
| rosa_laevigata | RLG00000010904 |
| rosa_multiflora | Rmu_ssc0000276.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00162990 Rroxscaffold_7G00163000 |
| rosa_rugosa | Rorug06G0339100 Rorug06G0339200 |
| rosa_samantha | Rh6AG450700 Rh6BG450700 Rh6CG464800 Rh6DG451400 |
| rosa_wichuraiana | Rw6G039280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1792 |
| AccB1I | GGYRCC | 2 cut(s) | 404, 1849 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 235 |
| AccI | GTMKAC | 1 cut(s) | 615 |
| AccII | CGCG | 1 cut(s) | 288 |
| AccIII | TCCGGA | 1 cut(s) | 736 |
| AciI | CCGC | 4 cut(s) | 420, 799, 848, 1651 |
| AclWI | GGATC | 5 cut(s) | 248, 1916, 2072, 2085, 2179 |
| AcoI | YGGCCR | 1 cut(s) | 1839 |
| AcuI | CTGAAG | 2 cut(s) | 1260, 2241 |
| AfaI | GTAC | 6 cut(s) | 330, 1075, 1548, 1625, 1931, 1970 |
| AfeI | AGCGCT | 1 cut(s) | 1127 |
| AgsI | TTSAA | 7 cut(s) | 195, 436, 896, 1377, 1544, 1780, 2070 |
| AjnI | CCWGG | 3 cut(s) | 263, 1841, 2314 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 126, 158 |
| Alw21I | GWGCWC | 3 cut(s) | 744, 1050, 1770 |
| Alw26I | GTCTC | 1 cut(s) | 2219 |
| Alw44I | GTGCAC | 1 cut(s) | 1766 |
| AlwI | GGATC | 5 cut(s) | 248, 1916, 2072, 2085, 2179 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 47, 1865 |
| Ama87I | CYCGRG | 2 cut(s) | 523, 1043 |
| Aor13HI | TCCGGA | 1 cut(s) | 736 |
| Aor51HI | AGCGCT | 1 cut(s) | 1127 |
| AoxI | GGCC | 5 cut(s) | 130, 785, 1590, 1839, 2096 |
| ApaLI | GTGCAC | 1 cut(s) | 1766 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 713, 745 |
| AspLEI | GCGC | 2 cut(s) | 1128, 1273 |
| AspS9I | GGNCC | 7 cut(s) | 226, 716, 786, 1445, 1590, 2170, 2312 |
| AsuC2I | CCSGG | 1 cut(s) | 453 |
| AsuHPI | GGTGA | 8 cut(s) | 174, 549, 690, 933, 1442, 2194, 2259, 2261 |
| AvaI | CYCGRG | 2 cut(s) | 523, 1043 |
| AvaII | GGWCC | 5 cut(s) | 226, 716, 1445, 2170, 2312 |
| BaeGI | GKGCMC | 3 cut(s) | 458, 1770, 1854 |
| BalI | TGGCCA | 1 cut(s) | 1841 |
| BamHI | GGATCC | 1 cut(s) | 2077 |
| BanI | GGYRCC | 2 cut(s) | 404, 1849 |
| BanII | GRGCYC | 2 cut(s) | 744, 1050 |
| BbsI | GAAGAC | 2 cut(s) | 342, 1653 |
| Bbv12I | GWGCWC | 3 cut(s) | 744, 1050, 1770 |
| BbvCI | CCTCAGC | 1 cut(s) | 1173 |
| BccI | CCATC | 8 cut(s) | 29, 123, 560, 745, 1000, 1864, 2239, 2294 |
| BceAI | ACGGC | 2 cut(s) | 1113, 2069 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 307, 341 |
| BciT130I | CCWGG | 3 cut(s) | 265, 1843, 2316 |
| BclI | TGATCA | 1 cut(s) | 1998 |
| BcnI | CCSGG | 1 cut(s) | 453 |
| BcoDI | GTCTC | 1 cut(s) | 2219 |
| BfaI | CTAG | 5 cut(s) | 332, 708, 1248, 1466, 2297 |
| BfmI | CTRYAG | 1 cut(s) | 2291 |
| BfoI | RGCGCY | 1 cut(s) | 1129 |
| BfuAI | ACCTGC | 1 cut(s) | 1792 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1232, 2129 |
| BglII | AGATCT | 1 cut(s) | 2324 |
| BmcAI | AGTACT | 2 cut(s) | 1075, 1548 |
| Bme1390I | CCNGG | 4 cut(s) | 265, 453, 1843, 2316 |
| Bme18I | GGWCC | 5 cut(s) | 226, 716, 1445, 2170, 2312 |
| BmeT110I | CYCGRG | 2 cut(s) | 523, 1043 |
| BmgT120I | GGNCC | 7 cut(s) | 226, 716, 786, 1445, 1590, 2170, 2312 |
| BmiI | GGNNCC | 8 cut(s) | 227, 406, 474, 569, 1591, 1851, 2079, 2320 |
| BmrFI | CCNGG | 4 cut(s) | 265, 453, 1843, 2316 |
| BmsI | GCATC | 4 cut(s) | 810, 1495, 1573, 2242 |
| BoxI | GACNNNNGTC | 1 cut(s) | 985 |
| BpiI | GAAGAC | 2 cut(s) | 342, 1653 |
| BpmI | CTGGAG | 4 cut(s) | 459, 531, 1106, 2305 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1173, 1694 |
| BpuEI | CTTGAG | 2 cut(s) | 1034, 1497 |
| BpuMI | CCSGG | 1 cut(s) | 453 |
| BsaJI | CCNNGG | 4 cut(s) | 264, 1227, 1585, 2173 |
| BsaWI | WCCGGW | 3 cut(s) | 640, 736, 2167 |
| Bse1I | ACTGG | 2 cut(s) | 657, 1269 |
| Bse3DI | GCAATG | 2 cut(s) | 1191, 2022 |
| BseAI | TCCGGA | 1 cut(s) | 736 |
| BseBI | CCWGG | 3 cut(s) | 265, 1843, 2316 |
| BseDI | CCNNGG | 4 cut(s) | 264, 1227, 1585, 2173 |
| BseGI | GGATG | 6 cut(s) | 40, 349, 1360, 1564, 1613, 2233 |
| BseMI | GCAATG | 2 cut(s) | 1191, 2022 |
| BseMII | CTCAG | 5 cut(s) | 137, 980, 1164, 1590, 1917 |
| BseNI | ACTGG | 2 cut(s) | 657, 1269 |
| BseRI | GAGGAG | 3 cut(s) | 137, 946, 1045 |
| BseSI | GKGCMC | 3 cut(s) | 458, 1770, 1854 |
| BseYI | CCCAGC | 2 cut(s) | 788, 2271 |
| BsgI | GTGCAG | 2 cut(s) | 280, 2163 |
| Bsh1236I | CGCG | 1 cut(s) | 288 |
| BshFI | GGCC | 5 cut(s) | 132, 787, 1592, 1841, 2098 |
| BshNI | GGYRCC | 2 cut(s) | 404, 1849 |
| BsiHKAI | GWGCWC | 3 cut(s) | 744, 1050, 1770 |
| BsiHKCI | CYCGRG | 2 cut(s) | 523, 1043 |
| BsiSI | CCGG | 5 cut(s) | 452, 641, 737, 1902, 2168 |
| BslFI | GGGAC | 4 cut(s) | 58, 239, 2034, 2071 |
| BsmAI | GTCTC | 1 cut(s) | 2219 |
| BsmFI | GGGAC | 4 cut(s) | 58, 239, 2034, 2071 |
| BsnI | GGCC | 5 cut(s) | 132, 787, 1592, 1841, 2098 |
| BsoBI | CYCGRG | 2 cut(s) | 523, 1043 |
| Bsp1286I | GDGCHC | 5 cut(s) | 458, 744, 1050, 1770, 1854 |
| Bsp13I | TCCGGA | 1 cut(s) | 736 |
| Bsp19I | CCATGG | 1 cut(s) | 1227 |
| BspACI | CCGC | 4 cut(s) | 420, 799, 848, 1651 |
| BspANI | GGCC | 5 cut(s) | 132, 787, 1592, 1841, 2098 |
| BspCNI | CTCAG | 5 cut(s) | 136, 979, 1165, 1591, 1918 |
| BspEI | TCCGGA | 1 cut(s) | 736 |
| BspFNI | CGCG | 1 cut(s) | 288 |
| BspLI | GGNNCC | 8 cut(s) | 227, 406, 474, 569, 1591, 1851, 2079, 2320 |
| BspMAI | CTGCAG | 1 cut(s) | 2295 |
| BspMI | ACCTGC | 1 cut(s) | 1792 |
| BspPI | GGATC | 5 cut(s) | 248, 1916, 2072, 2085, 2179 |
| BspT107I | GGYRCC | 2 cut(s) | 404, 1849 |
| BsrDI | GCAATG | 2 cut(s) | 1191, 2022 |
| BsrI | ACTGG | 2 cut(s) | 657, 1269 |
| BssECI | CCNNGG | 4 cut(s) | 264, 1227, 1585, 2173 |
| BssT1I | CCWWGG | 3 cut(s) | 1227, 1585, 2173 |
| Bst2UI | CCWGG | 3 cut(s) | 265, 1843, 2316 |
| Bst4CI | ACNGT | 8 cut(s) | 460, 1167, 1350, 1527, 1673, 1772, 1881, 2258 |
| Bst6I | CTCTTC | 4 cut(s) | 1152, 1271, 1657, 2217 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 47, 1337 |
| BstC8I | GCNNGC | 4 cut(s) | 1594, 1946, 2013, 2130 |
| BstDEI | CTNAG | 8 cut(s) | 123, 428, 966, 1173, 1550, 1599, 1694, 1926 |
| BstDSI | CCRYGG | 1 cut(s) | 1227 |
| BstEII | GGTNACC | 1 cut(s) | 696 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2177 |
| BstF5I | GGATG | 6 cut(s) | 40, 349, 1360, 1564, 1613, 2233 |
| BstFNI | CGCG | 1 cut(s) | 288 |
| BstH2I | RGCGCY | 1 cut(s) | 1129 |
| BstHHI | GCGC | 2 cut(s) | 1128, 1273 |
| BstMAI | GTCTC | 1 cut(s) | 2219 |
| BstNI | CCWGG | 3 cut(s) | 265, 1843, 2316 |
| BstNSI | RCATGY | 1 cut(s) | 1948 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 985 |
| BstPI | GGTNACC | 1 cut(s) | 696 |
| BstSCI | CCNGG | 4 cut(s) | 263, 451, 1841, 2314 |
| BstSFI | CTRYAG | 1 cut(s) | 2291 |
| BstSLI | GKGCMC | 3 cut(s) | 458, 1770, 1854 |
| BstUI | CGCG | 1 cut(s) | 288 |
| BstV2I | GAAGAC | 2 cut(s) | 342, 1653 |
| BstX2I | RGATCY | 2 cut(s) | 2077, 2324 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2245 |
| BstYI | RGATCY | 2 cut(s) | 2077, 2324 |
| BsuRI | GGCC | 5 cut(s) | 132, 787, 1592, 1841, 2098 |
| BtgI | CCRYGG | 1 cut(s) | 1227 |
| BtsCI | GGATG | 6 cut(s) | 40, 349, 1360, 1564, 1613, 2233 |
| BtsI | GCAGTG | 2 cut(s) | 66, 2288 |
| BtsIMutI | CAGTG | 8 cut(s) | 66, 95, 456, 650, 1342, 1866, 2240, 2288 |
| BveI | ACCTGC | 1 cut(s) | 1792 |
| Cac8I | GCNNGC | 4 cut(s) | 1594, 1946, 2013, 2130 |
| CaiI | CAGNNNCTG | 2 cut(s) | 47, 1865 |
| CfoI | GCGC | 2 cut(s) | 1128, 1273 |
| Cfr13I | GGNCC | 7 cut(s) | 226, 716, 786, 1445, 1590, 2170, 2312 |
| Csp6I | GTAC | 6 cut(s) | 329, 1074, 1547, 1624, 1930, 1969 |
| CviAII | CATG | 9 cut(s) | 152, 674, 880, 901, 1228, 1627, 1945, 2033, 2113 |
| CviQI | GTAC | 6 cut(s) | 329, 1074, 1547, 1624, 1930, 1969 |
| DdeI | CTNAG | 8 cut(s) | 123, 428, 966, 1173, 1550, 1599, 1694, 1926 |
| EaeI | YGGCCR | 1 cut(s) | 1839 |
| Eam1104I | CTCTTC | 4 cut(s) | 1152, 1271, 1657, 2217 |
| EarI | CTCTTC | 4 cut(s) | 1152, 1271, 1657, 2217 |
| Ecl136II | GAGCTC | 2 cut(s) | 742, 1048 |
| Eco130I | CCWWGG | 3 cut(s) | 1227, 1585, 2173 |
| Eco24I | GRGCYC | 2 cut(s) | 744, 1050 |
| Eco32I | GATATC | 2 cut(s) | 325, 931 |
| Eco47I | GGWCC | 5 cut(s) | 226, 716, 1445, 2170, 2312 |
| Eco47III | AGCGCT | 1 cut(s) | 1127 |
| Eco53kI | GAGCTC | 2 cut(s) | 742, 1048 |
| Eco57I | CTGAAG | 2 cut(s) | 1260, 2241 |
| Eco88I | CYCGRG | 2 cut(s) | 523, 1043 |
| Eco91I | GGTNACC | 1 cut(s) | 696 |
| EcoICRI | GAGCTC | 2 cut(s) | 742, 1048 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2177 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1590 |
| EcoO65I | GGTNACC | 1 cut(s) | 696 |
| EcoRII | CCWGG | 3 cut(s) | 263, 1841, 2314 |
| EcoRV | GATATC | 2 cut(s) | 325, 931 |
| EcoT14I | CCWWGG | 3 cut(s) | 1227, 1585, 2173 |
| EcoT22I | ATGCAT | 1 cut(s) | 2235 |
| EcoT38I | GRGCYC | 2 cut(s) | 744, 1050 |
| ErhI | CCWWGG | 3 cut(s) | 1227, 1585, 2173 |
| FaeI | CATG | 9 cut(s) | 155, 677, 883, 904, 1231, 1630, 1948, 2036, 2116 |
| FaqI | GGGAC | 4 cut(s) | 58, 239, 2034, 2071 |
| FatI | CATG | 9 cut(s) | 151, 673, 879, 900, 1227, 1626, 1944, 2032, 2112 |
| FauI | CCCGC | 1 cut(s) | 855 |
| FauNDI | CATATG | 1 cut(s) | 610 |
| FbaI | TGATCA | 1 cut(s) | 1998 |
| FblI | GTMKAC | 1 cut(s) | 615 |
| FokI | GGATG | 6 cut(s) | 47, 356, 1367, 1551, 1620, 2220 |
| FriOI | GRGCYC | 2 cut(s) | 744, 1050 |
| FspBI | CTAG | 5 cut(s) | 332, 708, 1248, 1466, 2297 |
| GlaI | GCGC | 2 cut(s) | 1127, 1272 |
| GsaI | CCCAGC | 2 cut(s) | 792, 2275 |
| GsuI | CTGGAG | 4 cut(s) | 459, 531, 1106, 2305 |
| HaeII | RGCGCY | 1 cut(s) | 1129 |
| HaeIII | GGCC | 5 cut(s) | 132, 787, 1592, 1841, 2098 |
| HapII | CCGG | 5 cut(s) | 452, 641, 737, 1902, 2168 |
| HhaI | GCGC | 2 cut(s) | 1128, 1273 |
| Hin1II | CATG | 9 cut(s) | 155, 677, 883, 904, 1231, 1630, 1948, 2036, 2116 |
| Hin6I | GCGC | 2 cut(s) | 1126, 1271 |
| HinP1I | GCGC | 2 cut(s) | 1126, 1271 |
| HinfI | GANTC | 9 cut(s) | 338, 432, 680, 755, 830, 896, 1281, 1415, 2026 |
| HpaII | CCGG | 5 cut(s) | 452, 641, 737, 1902, 2168 |
| HphI | GGTGA | 8 cut(s) | 174, 549, 690, 933, 1442, 2194, 2259, 2261 |
| Hpy166II | GTNNAC | 6 cut(s) | 616, 1618, 1676, 1768, 1969, 2312 |
| Hpy188I | TCNGA | 9 cut(s) | 126, 343, 445, 604, 685, 760, 1307, 1354, 1963 |
| Hpy8I | GTNNAC | 6 cut(s) | 616, 1618, 1676, 1768, 1969, 2312 |
| Hpy99I | CGWCG | 1 cut(s) | 1832 |
| HpyAV | CCTTC | 5 cut(s) | 287, 777, 909, 1427, 2047 |
| HpyCH4III | ACNGT | 8 cut(s) | 460, 1167, 1350, 1527, 1673, 1772, 1881, 2258 |
| HpyCH4IV | ACGT | 1 cut(s) | 1830 |
| HpyF3I | CTNAG | 8 cut(s) | 123, 428, 966, 1173, 1550, 1599, 1694, 1926 |
| HpySE526I | ACGT | 1 cut(s) | 1830 |
| Hsp92II | CATG | 9 cut(s) | 155, 677, 883, 904, 1231, 1630, 1948, 2036, 2116 |
| HspAI | GCGC | 2 cut(s) | 1126, 1271 |
| Kpn2I | TCCGGA | 1 cut(s) | 736 |
| Ksp22I | TGATCA | 1 cut(s) | 1998 |
| LmnI | GCTCC | 8 cut(s) | 38, 478, 550, 739, 747, 1587, 1638, 2324 |
| LweI | GCATC | 4 cut(s) | 810, 1495, 1573, 2242 |
| MaeI | CTAG | 5 cut(s) | 332, 708, 1248, 1466, 2297 |
| MaeII | ACGT | 1 cut(s) | 1830 |
| MaeIII | GTNAC | 5 cut(s) | 212, 578, 696, 1772, 1873 |
| MflI | RGATCY | 2 cut(s) | 2077, 2324 |
| MhlI | GDGCHC | 5 cut(s) | 458, 744, 1050, 1770, 1854 |
| MlsI | TGGCCA | 1 cut(s) | 1841 |
| MluCI | AATT | 9 cut(s) | 138, 220, 269, 467, 1133, 1254, 1386, 1485, 1704 |
| MluNI | TGGCCA | 1 cut(s) | 1841 |
| MlyI | GAGTC | 2 cut(s) | 332, 2020 |
| MmeI | TCCRAC | 2 cut(s) | 225, 1332 |
| Mox20I | TGGCCA | 1 cut(s) | 1841 |
| Mph1103I | ATGCAT | 1 cut(s) | 2235 |
| MroI | TCCGGA | 1 cut(s) | 736 |
| MscI | TGGCCA | 1 cut(s) | 1841 |
| MseI | TTAA | 3 cut(s) | 1488, 1530, 2150 |
| MslI | CAYNNNNRTG | 4 cut(s) | 100, 461, 672, 2243 |
| Msp20I | TGGCCA | 1 cut(s) | 1841 |
| MspA1I | CMGCKG | 2 cut(s) | 1238, 1712 |
| MspI | CCGG | 5 cut(s) | 452, 641, 737, 1902, 2168 |
| MspR9I | CCNGG | 4 cut(s) | 265, 453, 1843, 2316 |
| MvaI | CCWGG | 3 cut(s) | 265, 1843, 2316 |
| MvnI | CGCG | 1 cut(s) | 288 |
| NciI | CCSGG | 1 cut(s) | 453 |
| NcoI | CCATGG | 1 cut(s) | 1227 |
| NdeI | CATATG | 1 cut(s) | 610 |
| NlaIII | CATG | 9 cut(s) | 155, 677, 883, 904, 1231, 1630, 1948, 2036, 2116 |
| NlaIV | GGNNCC | 8 cut(s) | 227, 406, 474, 569, 1591, 1851, 2079, 2320 |
| NmeAIII | GCCGAG | 1 cut(s) | 1929 |
| NmuCI | GTSAC | 3 cut(s) | 696, 1772, 1873 |
| NsiI | ATGCAT | 1 cut(s) | 2235 |
| NspI | RCATGY | 1 cut(s) | 1948 |
| PaeI | GCATGC | 1 cut(s) | 1948 |
| PaeR7I | CTCGAG | 2 cut(s) | 523, 1043 |
| PfeI | GAWTC | 7 cut(s) | 432, 680, 755, 830, 896, 1281, 1415 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 235 |
| PleI | GAGTC | 2 cut(s) | 332, 2020 |
| PpsI | GAGTC | 2 cut(s) | 332, 2020 |
| PshAI | GACNNNNGTC | 1 cut(s) | 985 |
| Psp124BI | GAGCTC | 2 cut(s) | 744, 1050 |
| Psp6I | CCWGG | 3 cut(s) | 263, 1841, 2314 |
| PspEI | GGTNACC | 1 cut(s) | 696 |
| PspFI | CCCAGC | 2 cut(s) | 788, 2271 |
| PspGI | CCWGG | 3 cut(s) | 263, 1841, 2314 |
| PspN4I | GGNNCC | 8 cut(s) | 227, 406, 474, 569, 1591, 1851, 2079, 2320 |
| PspPI | GGNCC | 7 cut(s) | 226, 716, 786, 1445, 1590, 2170, 2312 |
| PspXI | VCTCGAGB | 1 cut(s) | 1043 |
| PstI | CTGCAG | 1 cut(s) | 2295 |
| PstNI | CAGNNNCTG | 2 cut(s) | 47, 1865 |
| PsuI | RGATCY | 2 cut(s) | 2077, 2324 |
| PvuII | CAGCTG | 2 cut(s) | 1238, 1712 |
| RsaI | GTAC | 6 cut(s) | 330, 1075, 1548, 1625, 1931, 1970 |
| RsaNI | GTAC | 6 cut(s) | 329, 1074, 1547, 1624, 1930, 1969 |
| RseI | CAYNNNNRTG | 4 cut(s) | 100, 461, 672, 2243 |
| SacI | GAGCTC | 2 cut(s) | 744, 1050 |
| SaqAI | TTAA | 3 cut(s) | 1488, 1530, 2150 |
| Sau96I | GGNCC | 7 cut(s) | 226, 716, 786, 1445, 1590, 2170, 2312 |
| ScaI | AGTACT | 2 cut(s) | 1075, 1548 |
| SchI | GAGTC | 2 cut(s) | 332, 2020 |
| ScrFI | CCNGG | 4 cut(s) | 265, 453, 1843, 2316 |
| SduI | GDGCHC | 5 cut(s) | 458, 744, 1050, 1770, 1854 |
| SfaNI | GCATC | 4 cut(s) | 810, 1495, 1573, 2242 |
| SfcI | CTRYAG | 1 cut(s) | 2291 |
| Sfr274I | CTCGAG | 2 cut(s) | 523, 1043 |
| SinI | GGWCC | 5 cut(s) | 226, 716, 1445, 2170, 2312 |
| SlaI | CTCGAG | 2 cut(s) | 523, 1043 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 100, 461, 672, 2243 |
| SmlI | CTYRAG | 4 cut(s) | 523, 1043, 1049, 1512 |
| SmoI | CTYRAG | 4 cut(s) | 523, 1043, 1049, 1512 |
| SphI | GCATGC | 1 cut(s) | 1948 |
| Sse9I | AATT | 9 cut(s) | 138, 220, 269, 467, 1133, 1254, 1386, 1485, 1704 |
| SsiI | CCGC | 4 cut(s) | 420, 799, 848, 1651 |
| SspMI | CTAG | 5 cut(s) | 332, 708, 1248, 1466, 2297 |
| SstI | GAGCTC | 2 cut(s) | 744, 1050 |
| StyD4I | CCNGG | 4 cut(s) | 263, 451, 1841, 2314 |
| StyI | CCWWGG | 3 cut(s) | 1227, 1585, 2173 |
| TaaI | ACNGT | 8 cut(s) | 460, 1167, 1350, 1527, 1673, 1772, 1881, 2258 |
| TaiI | ACGT | 1 cut(s) | 1833 |
| TaqI | TCGA | 8 cut(s) | 363, 387, 524, 1044, 1885, 2037, 2103, 2331 |
| TasI | AATT | 9 cut(s) | 138, 220, 269, 467, 1133, 1254, 1386, 1485, 1704 |
| TatI | WGTACW | 4 cut(s) | 1073, 1546, 1623, 1968 |
| TfiI | GAWTC | 7 cut(s) | 432, 680, 755, 830, 896, 1281, 1415 |
| Tru1I | TTAA | 3 cut(s) | 1488, 1530, 2150 |
| Tru9I | TTAA | 3 cut(s) | 1488, 1530, 2150 |
| TscAI | CASTG | 8 cut(s) | 66, 102, 463, 657, 1342, 1866, 2247, 2295 |
| TseFI | GTSAC | 3 cut(s) | 696, 1772, 1873 |
| Tsp45I | GTSAC | 3 cut(s) | 696, 1772, 1873 |
| TspDTI | ATGAA | 7 cut(s) | 479, 647, 693, 896, 917, 1310, 2129 |
| TspGWI | ACGGA | 1 cut(s) | 580 |
| TspRI | CASTG | 8 cut(s) | 66, 102, 463, 657, 1342, 1866, 2247, 2295 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 235 |
| VneI | GTGCAC | 1 cut(s) | 1766 |
| VpaK11BI | GGWCC | 5 cut(s) | 226, 716, 1445, 2170, 2312 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2177 |
| XbaI | TCTAGA | 1 cut(s) | 1465 |
| XceI | RCATGY | 1 cut(s) | 1948 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1225, 1683, 2014 |
| XhoI | CTCGAG | 2 cut(s) | 523, 1043 |
| XmiI | GTMKAC | 1 cut(s) | 615 |
| XspI | CTAG | 5 cut(s) | 332, 708, 1248, 1466, 2297 |
| ZrmI | AGTACT | 2 cut(s) | 1075, 1548 |
| Zsp2I | ATGCAT | 1 cut(s) | 2235 |