Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009946

Physical Location & Seq

Genomic Coordinates Reverse (-)

10397377 .. 10400802

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G24490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTTCTCCAGCAGCCAATTCGAGCCTAATTCCGGCTTCTCCGGCGGCGGATTCATGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAGAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAATGTTTCCAATCCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAGTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCGAGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTCAGGGCAAAACTCAGCTTCTTGTTTTCTCTGTGAGGCCTATTATGGACTTCAATGAGGTTACTTTTCACTACATTGAGTGTATACACTTCTACTCCCAGAACTCTGAATCACAGAGACAACAAGTCGGTGATGTCACTCAGTCAGTTAACACCACATTTCAAGGTGGATCAAACACAAACCAGGCAACACTATTGAACCCTGTGGTTTCTTCTCAAAACAATGATGGCAATGGGCGCAAGAACTTGGATGATATGATTCTAGACTATCTAAAGCAACCTGCTTGCACTGCAAGACAACAGGGGATACATATCGATGAAATTGCTCAGCAGTTGAAGATCCCAAAAAACAAGCTAGAGGGCGTTGTTCAATCACTGGAAGGAGATGGTCTAATATACTCGACAATCGATGAGTATCACTTCAAGCACGTGGAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0018130 GO:0019222 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

279

Amino Acids

30.98

Weight (kDa)

5.18

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	73 - 148	1.8e-09	OB-fold nucleic acid binding domain
RPA_C	PF08784	163 - 271	3.6e-28	Replication protein A C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24490 AT2G24490
fragaria_vesca	FvH4_2g36940 FvH4_2g36940 FvH4_2g36940
malus_domestica	MD08G1131500.v1.1 MD08G1131600.v1.1 MD15G1109200.v1.1
prunus_persica	Prupe.1G461400_v2.0.a1
pyrus_communis	pycom08g11020
rosa_chinensis	RchiOBHm_Chr6g0304821
rosa_laevigata	RLG00000010946
rosa_multiflora	Rmu_ssc0000426.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163440
rosa_rugosa	Rorug06G0335100 Rorug06G0335200
rosa_samantha	Rh6AG446800 Rh6BG454800 Rh6CG460300 Rh6DG447200
rosa_wichuraiana	Rw6G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	688
AccI	GTMKAC	1 cut(s)	484
AciI	CCGC	3 cut(s)	45, 48, 99
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	2 cut(s)	577, 733
AcvI	CACGTG	1 cut(s)	829
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	8 cut(s)	119, 394, 454, 563, 598, 736, 770, 823
AhdI	GACNNNNNGTC	1 cut(s)	524
AjnI	CCWGG	1 cut(s)	582
AluBI	AGCT	3 cut(s)	418, 754, 835
AluI	AGCT	3 cut(s)	418, 754, 835
Alw26I	GTCTC	2 cut(s)	191, 511
AlwI	GGATC	2 cut(s)	577, 733
AoxI	GGCC	1 cut(s)	437
ApeKI	GCWGC	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	378, 639
AsuHPI	GGTGA	5 cut(s)	142, 151, 185, 331, 542
BbrPI	CACGTG	1 cut(s)	829
BbsI	GAAGAC	2 cut(s)	51, 401
BbvI	GCAGC	1 cut(s)	24
BccI	CCATC	5 cut(s)	281, 309, 356, 620, 779
BcgI	CGANNNNNNTGC	3 cut(s)	35, 704, 738
BciT130I	CCWGG	1 cut(s)	584
BciVI	GTATCC	1 cut(s)	699
BcoDI	GTCTC	2 cut(s)	191, 511
BfaI	CTAG	3 cut(s)	339, 662, 755
BfuAI	ACCTGC	1 cut(s)	688
BfuI	GTATCC	1 cut(s)	699
BisI	GCNGC	2 cut(s)	13, 46
BlpI	GCTNAGC	1 cut(s)	726
BlsI	GCNGC	2 cut(s)	14, 47
Bme1390I	CCNGG	1 cut(s)	584
BmeRI	GACNNNNNGTC	1 cut(s)	524
BmrFI	CCNGG	1 cut(s)	584
BpiI	GAAGAC	2 cut(s)	51, 401
Bpu1102I	GCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	57
Bsa29I	ATCGAT	2 cut(s)	714, 807
BsaAI	YACGTR	1 cut(s)	829
BsaBI	GATNNNNATC	2 cut(s)	710, 813
BsaI	GGTCTC	1 cut(s)	191
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 479, 509
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	3 cut(s)	131, 168, 780
Bse3DI	GCAATG	1 cut(s)	637
Bse8I	GATNNNNATC	2 cut(s)	710, 813
BseBI	CCWGG	1 cut(s)	584
BseCI	ATCGAT	2 cut(s)	714, 807
BseGI	GGATG	1 cut(s)	655
BseJI	GATNNNNATC	2 cut(s)	710, 813
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	4 cut(s)	394, 428, 554, 740
BseNI	ACTGG	3 cut(s)	131, 168, 780
BseRI	GAGGAG	2 cut(s)	79, 82
BseXI	GCAGC	1 cut(s)	24
BshFI	GGCC	1 cut(s)	439
BshVI	ATCGAT	2 cut(s)	714, 807
BsiSI	CCGG	2 cut(s)	33, 42
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	2 cut(s)	191, 511
BsnI	GGCC	1 cut(s)	439
Bso31I	GGTCTC	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	569, 738
Bsp1720I	GCTNAGC	1 cut(s)	726
BspACI	CCGC	3 cut(s)	45, 48, 99
BspANI	GGCC	1 cut(s)	439
BspCNI	CTCAG	4 cut(s)	393, 427, 553, 739
BspDI	ATCGAT	2 cut(s)	714, 807
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	2 cut(s)	577, 733
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	637
BsrI	ACTGG	3 cut(s)	131, 168, 780
BssMI	GATC	2 cut(s)	569, 738
BssNAI	GTATAC	1 cut(s)	485
Bst1107I	GTATAC	1 cut(s)	485
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	2 cut(s)	139, 308
BstBAI	YACGTR	1 cut(s)	829
BstC8I	GCNNGC	1 cut(s)	685
BstDEI	CTNAG	5 cut(s)	102, 380, 414, 540, 726
BstF5I	GGATG	1 cut(s)	655
BstHHI	GCGC	2 cut(s)	378, 639
BstKTI	GATC	2 cut(s)	572, 741
BstMAI	GTCTC	2 cut(s)	191, 511
BstMBI	GATC	2 cut(s)	569, 738
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 636, 689, 832
BstNI	CCWGG	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	24
BstV2I	GAAGAC	2 cut(s)	51, 401
BstX2I	RGATCY	1 cut(s)	738
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	738
BstZ17I	GTATAC	1 cut(s)	485
Bsu15I	ATCGAT	2 cut(s)	714, 807
BsuI	GTATCC	1 cut(s)	699
BsuRI	GGCC	1 cut(s)	439
BsuTUI	ATCGAT	2 cut(s)	714, 807
BtsCI	GGATG	1 cut(s)	655
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	5 cut(s)	138, 175, 388, 687, 773
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	1 cut(s)	685
CfoI	GCGC	2 cut(s)	378, 639
ClaI	ATCGAT	2 cut(s)	714, 807
CseI	GACGC	1 cut(s)	344
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	8 cut(s)	15, 25, 36, 77, 418, 439, 754, 835
CviKI_1	RGCY	8 cut(s)	15, 25, 36, 77, 418, 439, 754, 835
DdeI	CTNAG	5 cut(s)	102, 380, 414, 540, 726
DpnI	GATC	2 cut(s)	571, 740
DpnII	GATC	2 cut(s)	569, 738
DriI	GACNNNNNGTC	1 cut(s)	524
Eam1105I	GACNNNNNGTC	1 cut(s)	524
EciI	GGCGGA	1 cut(s)	63
Eco147I	AGGCCT	1 cut(s)	439
Eco31I	GGTCTC	1 cut(s)	191
Eco72I	CACGTG	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	582
FaeI	CATG	1 cut(s)	58
FaiI	YATR	7 cut(s)	56, 372, 446, 485, 656, 711, 796
FatI	CATG	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	484
Fnu4HI	GCNGC	2 cut(s)	13, 46
FokI	GGATG	1 cut(s)	662
Fsp4HI	GCNGC	2 cut(s)	13, 46
FspBI	CTAG	3 cut(s)	339, 662, 755
GlaI	GCGC	2 cut(s)	377, 638
GluI	GCNGC	2 cut(s)	13, 46
HaeIII	GGCC	1 cut(s)	439
HapII	CCGG	2 cut(s)	33, 42
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	2 cut(s)	378, 639
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	2 cut(s)	376, 637
HinP1I	GCGC	2 cut(s)	376, 637
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	9 cut(s)	51, 83, 106, 201, 251, 273, 350, 509, 658
HpaI	GTTAAC	1 cut(s)	550
HpaII	CCGG	2 cut(s)	33, 42
HphI	GGTGA	5 cut(s)	142, 151, 185, 331, 542
Hpy166II	GTNNAC	2 cut(s)	485, 550
Hpy188I	TCNGA	1 cut(s)	508
Hpy188III	TCNNGA	3 cut(s)	110, 281, 662
Hpy8I	GTNNAC	2 cut(s)	485, 550
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	2 cut(s)	78, 773
HpyCH4III	ACNGT	2 cut(s)	139, 308
HpyCH4IV	ACGT	2 cut(s)	216, 828
HpyCH4V	TGCA	2 cut(s)	687, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 636, 689, 832
HpyF3I	CTNAG	5 cut(s)	102, 380, 414, 540, 726
HpySE526I	ACGT	2 cut(s)	216, 828
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	2 cut(s)	376, 637
KspAI	GTTAAC	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	569, 738
LmnI	GCTCC	1 cut(s)	832
Lsp1109I	GCAGC	1 cut(s)	24
MaeI	CTAG	3 cut(s)	339, 662, 755
MaeII	ACGT	2 cut(s)	216, 828
MaeIII	GTNAC	5 cut(s)	133, 239, 259, 460, 535
MalI	GATC	2 cut(s)	571, 740
MboI	GATC	2 cut(s)	569, 738
MboII	GAAGA	4 cut(s)	51, 406, 603, 748
MflI	RGATCY	1 cut(s)	738
MluCI	AATT	4 cut(s)	17, 28, 300, 720
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	7 cut(s)	97, 100, 103, 389, 429, 451, 751
MseI	TTAA	1 cut(s)	549
MslI	CAYNNNNRTG	1 cut(s)	714
MspI	CCGG	2 cut(s)	33, 42
MspR9I	CCNGG	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	4 cut(s)	42, 636, 689, 832
NdeII	GATC	2 cut(s)	569, 738
NlaIII	CATG	1 cut(s)	58
NmuCI	GTSAC	4 cut(s)	133, 239, 259, 535
PceI	AGGCCT	1 cut(s)	439
PfeI	GAWTC	8 cut(s)	51, 83, 106, 201, 251, 273, 509, 658
PkrI	GCNGC	2 cut(s)	14, 47
PleI	GAGTC	1 cut(s)	358
PmaCI	CACGTG	1 cut(s)	829
PmlI	CACGTG	1 cut(s)	829
PpsI	GAGTC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	829
Psp1406I	AACGTT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	582
PspCI	CACGTG	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	582
PsuI	RGATCY	1 cut(s)	738
RseI	CAYNNNNRTG	1 cut(s)	714
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	2 cut(s)	13, 46
Sau3AI	GATC	2 cut(s)	569, 738
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	714
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	4 cut(s)	17, 28, 300, 720
SseBI	AGGCCT	1 cut(s)	439
SsiI	CCGC	3 cut(s)	45, 48, 99
SspMI	CTAG	3 cut(s)	339, 662, 755
StuI	AGGCCT	1 cut(s)	439
StyD4I	CCNGG	1 cut(s)	582
TaaI	ACNGT	2 cut(s)	139, 308
TaiI	ACGT	2 cut(s)	219, 831
TaqI	TCGA	5 cut(s)	21, 333, 714, 800, 807
TasI	AATT	4 cut(s)	17, 28, 300, 720
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	8 cut(s)	51, 83, 106, 201, 251, 273, 509, 658
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	5 cut(s)	138, 175, 388, 694, 780
TseFI	GTSAC	4 cut(s)	133, 239, 259, 535
TseI	GCWGC	1 cut(s)	12
Tsp45I	GTSAC	4 cut(s)	133, 239, 259, 535
TspDTI	ATGAA	3 cut(s)	43, 264, 732
TspRI	CASTG	5 cut(s)	138, 175, 388, 694, 780
XbaI	TCTAGA	1 cut(s)	661
XmiI	GTMKAC	1 cut(s)	484
XspI	CTAG	3 cut(s)	339, 662, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.