Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009946

Physical Location & Seq

Genomic Coordinates Reverse (-)

63980603 .. 63983722

Gene Structure 3120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27392

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTCTCAGGCAGCCAATTCGACGCCACCTCCGCCTTCGGCGGCGGCGGGTTCATGTCTTCTCAGGCCACTCAACACGGCGATTCCAATCCCTCCGCTGCTAGGAGTCGTGAAAGTCACGGACTGGTTCCTGTGACGGTGAAGCAGATAAGCGAGGCTTATCAGTCTGGTGATGAGAAATCAAACTTTGTGATCGGCGGTGCTGATGTGGCCAATGTATCTGTGGTTGGGATGGTCTTTGAGAAAACCGAGAAGGCCACTGATGTTTCCTTTACTGTTGATGATGGAACGGGGCGATTCAAATGCCGAAGATGGGTCAATGAGAATTTTGACTCACAAGAAATGGAGGAAATACAAGATGGAATGTATGTTCGTGTCAATGGACATCTGAAAGCCTTTCAAGGTGTTCGACAGATAGTTGCATTCTCTGTGAGGCCTGTGAAGAACTTTGATGAAGTTGCCTTCCACTACATTGAGTGCATATATAACCACTTACTGCTACAGAAGCTCCAAGGAAATGCTGTTAATCAACCTCAGCCTATGGGATCATCTGTGTACACTCCTGTGAAGAGTGAGCCAAGTGGATATCAGACAGCCTCATCAAACCAATTTACTATTGATGGACGAATGAGCGCTCATGAATTGATCCTTGAATATTTGTCGCAGCCTTCAAGCATTGAGAGTGCAAACGGAACATCGACAGAAGAGCTTTCCCAGCGCCTAAAACTCCCCATGGACAAGATCTTGGTTGGTATCAAGTCTCTTGATGATGAAGGCCTAGTATATTCCACAATCGATGATTCTCACTTCAAGAAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0018130 GO:0019222 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

273

Amino Acids

29.96

Weight (kDa)

5.18

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	73 - 146	5.8e-10	OB-fold nucleic acid binding domain
RPA_C	PF08784	169 - 267	2.5e-11	Replication protein A C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24490 AT2G24490
fragaria_vesca	FvH4_2g36940 FvH4_2g36940 FvH4_2g36940
malus_domestica	MD08G1131500.v1.1 MD08G1131600.v1.1 MD15G1109200.v1.1
prunus_persica	Prupe.1G461400_v2.0.a1
pyrus_communis	pycom08g11020
rosa_chinensis	RchiOBHm_Chr6g0304821
rosa_laevigata	RLG00000010946
rosa_multiflora	Rmu_ssc0000426.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163440
rosa_rugosa	Rorug06G0335100 Rorug06G0335200
rosa_samantha	Rh6AG446800 Rh6BG454800 Rh6CG460300 Rh6DG447200
rosa_wichuraiana	Rw6G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	33, 42, 45, 48, 96, 198
AclWI	GGATC	2 cut(s)	553, 640
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	325
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	557
AfeI	AGCGCT	1 cut(s)	634
AfiI	CCNNNNNNNGG	2 cut(s)	102, 313
AgsI	TTSAA	5 cut(s)	301, 401, 653, 672, 811
AleI	CACNNNNGTG	1 cut(s)	563
AloI	GAACNNNNNNTCC	2 cut(s)	354, 386
AluBI	AGCT	2 cut(s)	508, 709
AluI	AGCT	2 cut(s)	508, 709
Alw26I	GTCTC	1 cut(s)	765
AlwI	GGATC	2 cut(s)	553, 640
Aor51HI	AGCGCT	1 cut(s)	634
AoxI	GGCC	5 cut(s)	66, 210, 255, 434, 775
ApeKI	GCWGC	3 cut(s)	12, 98, 664
ApoI	RAATTY	1 cut(s)	325
AspLEI	GCGC	2 cut(s)	635, 720
AsuHPI	GGTGA	2 cut(s)	151, 182
BalI	TGGCCA	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	3 cut(s)	24, 85, 676
BccI	CCATC	5 cut(s)	226, 278, 306, 353, 614
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	3 cut(s)	35, 285, 319
BcoDI	GTCTC	1 cut(s)	765
BfaI	CTAG	2 cut(s)	102, 779
BfmI	CTRYAG	1 cut(s)	500
BfoI	RGCGCY	2 cut(s)	636, 721
BglII	AGATCT	1 cut(s)	741
BisI	GCNGC	5 cut(s)	13, 43, 46, 99, 665
BlsI	GCNGC	5 cut(s)	14, 44, 47, 100, 666
BmiI	GGNNCC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	534
Bsa29I	ATCGAT	1 cut(s)	795
BsaBI	GATNNNNATC	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	511, 732
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 313
Bse1I	ACTGG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	87
BseCI	ATCGAT	1 cut(s)	795
BseDI	CCNNGG	2 cut(s)	511, 732
BseGI	GGATG	1 cut(s)	237
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	2 cut(s)	102, 313
BseMII	CTCAG	3 cut(s)	21, 77, 548
BseNI	ACTGG	1 cut(s)	129
BseXI	GCAGC	3 cut(s)	24, 85, 676
BseYI	CCCAGC	1 cut(s)	714
BshFI	GGCC	5 cut(s)	68, 212, 257, 436, 777
BshVI	ATCGAT	1 cut(s)	795
BslI	CCNNNNNNNGG	2 cut(s)	102, 313
BsmAI	GTCTC	1 cut(s)	765
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	5 cut(s)	68, 212, 257, 436, 777
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	4 cut(s)	192, 545, 645, 741
Bsp19I	CCATGG	1 cut(s)	732
BspACI	CCGC	6 cut(s)	33, 42, 45, 48, 96, 198
BspANI	GGCC	5 cut(s)	68, 212, 257, 436, 777
BspCNI	CTCAG	3 cut(s)	20, 76, 547
BspDI	ATCGAT	1 cut(s)	795
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	2 cut(s)	553, 640
BspQI	GCTCTTC	1 cut(s)	699
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	511, 732
BssMI	GATC	4 cut(s)	192, 545, 645, 741
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	2 cut(s)	511, 732
Bst4CI	ACNGT	2 cut(s)	139, 277
Bst6I	CTCTTC	2 cut(s)	563, 699
BstACI	GRCGYC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	555
BstDEI	CTNAG	3 cut(s)	7, 63, 534
BstDSI	CCRYGG	1 cut(s)	732
BstF5I	GGATG	1 cut(s)	237
BstH2I	RGCGCY	2 cut(s)	636, 721
BstHHI	GCGC	2 cut(s)	635, 720
BstKTI	GATC	4 cut(s)	195, 548, 648, 744
BstMAI	GTCTC	1 cut(s)	765
BstMBI	GATC	4 cut(s)	192, 545, 645, 741
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 209, 505, 715
BstSFI	CTRYAG	1 cut(s)	500
BstV1I	GCAGC	3 cut(s)	24, 85, 676
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	741
BstYI	RGATCY	1 cut(s)	741
Bsu15I	ATCGAT	1 cut(s)	795
BsuRI	GGCC	5 cut(s)	68, 212, 257, 436, 777
BsuTUI	ATCGAT	1 cut(s)	795
BtgI	CCRYGG	1 cut(s)	732
BtsCI	GGATG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	258
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	2 cut(s)	635, 720
ClaI	ATCGAT	1 cut(s)	795
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	3 cut(s)	55, 638, 733
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	3 cut(s)	7, 63, 534
DpnI	GATC	4 cut(s)	194, 547, 647, 743
DpnII	GATC	4 cut(s)	192, 545, 645, 741
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	563, 699
EarI	CTCTTC	2 cut(s)	563, 699
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	511, 732
Eco147I	AGGCCT	2 cut(s)	436, 777
Eco32I	GATATC	1 cut(s)	587
Eco47III	AGCGCT	1 cut(s)	634
EcoRV	GATATC	1 cut(s)	587
EcoT14I	CCWWGG	2 cut(s)	511, 732
ErhI	CCWWGG	2 cut(s)	511, 732
FaeI	CATG	3 cut(s)	58, 641, 736
FaiI	YATR	9 cut(s)	56, 369, 482, 484, 486, 542, 639, 734, 784
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FatI	CATG	3 cut(s)	54, 637, 732
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	5 cut(s)	13, 43, 46, 99, 665
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	5 cut(s)	13, 43, 46, 99, 665
FspBI	CTAG	2 cut(s)	102, 779
GlaI	GCGC	2 cut(s)	634, 719
GluI	GCNGC	5 cut(s)	13, 43, 46, 99, 665
GsaI	CCCAGC	1 cut(s)	718
HaeII	RGCGCY	2 cut(s)	636, 721
HaeIII	GGCC	5 cut(s)	68, 212, 257, 436, 777
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	2 cut(s)	635, 720
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	3 cut(s)	58, 641, 736
Hin6I	GCGC	2 cut(s)	633, 718
HinP1I	GCGC	2 cut(s)	633, 718
HinfI	GANTC	5 cut(s)	83, 106, 297, 332, 800
HphI	GGTGA	2 cut(s)	151, 182
Hpy166II	GTNNAC	2 cut(s)	556, 558
Hpy188I	TCNGA	2 cut(s)	390, 591
Hpy188III	TCNNGA	4 cut(s)	110, 638, 764, 811
Hpy8I	GTNNAC	2 cut(s)	556, 558
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	5 cut(s)	46, 247, 472, 678, 767
HpyCH4III	ACNGT	2 cut(s)	139, 277
HpyCH4V	TGCA	3 cut(s)	422, 480, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 209, 505, 715
HpyF3I	CTNAG	3 cut(s)	7, 63, 534
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	58, 641, 736
HspAI	GCGC	2 cut(s)	633, 718
Kzo9I	GATC	4 cut(s)	192, 545, 645, 741
LguI	GCTCTTC	1 cut(s)	699
LmnI	GCTCC	1 cut(s)	513
LpnPI	CCDG	7 cut(s)	50, 110, 144, 153, 450, 576, 728
Lsp1109I	GCAGC	3 cut(s)	24, 85, 676
MaeI	CTAG	2 cut(s)	102, 779
MaeIII	GTNAC	2 cut(s)	116, 133
MalI	GATC	4 cut(s)	194, 547, 647, 743
MboI	GATC	4 cut(s)	192, 545, 645, 741
MboII	GAAGA	5 cut(s)	51, 321, 454, 580, 716
MflI	RGATCY	1 cut(s)	741
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	4 cut(s)	17, 325, 608, 641
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	115, 326
MnlI	CCTC	7 cut(s)	40, 103, 148, 340, 426, 543, 607
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	563
Msp20I	TGGCCA	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	422
MwoI	GCNNNNNNNGC	4 cut(s)	32, 209, 505, 715
NcoI	CCATGG	1 cut(s)	732
NdeII	GATC	4 cut(s)	192, 545, 645, 741
NlaIII	CATG	3 cut(s)	58, 641, 736
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	2 cut(s)	116, 133
OliI	CACNNNNGTG	1 cut(s)	563
PagI	TCATGA	1 cut(s)	637
PceI	AGGCCT	2 cut(s)	436, 777
PciSI	GCTCTTC	1 cut(s)	699
PctI	GAATGC	1 cut(s)	422
PfeI	GAWTC	3 cut(s)	83, 297, 800
PkrI	GCNGC	5 cut(s)	14, 44, 47, 100, 666
PleI	GAGTC	2 cut(s)	114, 326
PpsI	GAGTC	2 cut(s)	114, 326
PspFI	CCCAGC	1 cut(s)	714
PspN4I	GGNNCC	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	741
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
RseI	CAYNNNNRTG	1 cut(s)	563
SapI	GCTCTTC	1 cut(s)	699
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	5 cut(s)	13, 43, 46, 99, 665
Sau3AI	GATC	4 cut(s)	192, 545, 645, 741
SchI	GAGTC	2 cut(s)	115, 326
SetI	ASST	5 cut(s)	32, 406, 510, 535, 711
SfcI	CTRYAG	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	563
Sse9I	AATT	4 cut(s)	17, 325, 608, 641
SseBI	AGGCCT	2 cut(s)	436, 777
SsiI	CCGC	6 cut(s)	33, 42, 45, 48, 96, 198
SspI	AATATT	1 cut(s)	656
SspMI	CTAG	2 cut(s)	102, 779
StuI	AGGCCT	2 cut(s)	436, 777
StyI	CCWWGG	2 cut(s)	511, 732
TaaI	ACNGT	2 cut(s)	139, 277
TaqI	TCGA	4 cut(s)	21, 409, 698, 795
TasI	AATT	4 cut(s)	17, 325, 608, 641
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	2 cut(s)	45, 48
TfiI	GAWTC	3 cut(s)	83, 297, 800
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	2 cut(s)	116, 133
TseI	GCWGC	3 cut(s)	12, 98, 664
Tsp45I	GTSAC	2 cut(s)	116, 133
TspDTI	ATGAA	4 cut(s)	43, 468, 654, 786
TspGWI	ACGGA	2 cut(s)	135, 705
TspRI	CASTG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XspI	CTAG	2 cut(s)	102, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.