Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009946

Physical Location & Seq

Genomic Coordinates Forward (+)

66786303 .. 66789439

Gene Structure 3137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG454800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCATTCTTCCTGCTTTTCTGCAAAATCAGTTGAACTCCATGTGTGTTATTTGTTTAATAGGGTCAATGAGAATTTTGACTCACAAGAAATGGAGGAAATACAAGATGGAATGTATGTTCGTGTCAATGGACATCTGAAAGCCTTTCAAGGTGTTCGACAGATAGTTGCATTCTCTGTGAGGCCTGTGAAGAACTTTGATGAAGTTGCCTTCCACTACATTGAGTGCATATATAACCACTTACAGTTACAGAAGCTCCAAGGAAATGCTGTTAATCAACCTCAGCCTATGGGATCATCTGTGTACACTCCTGTGAAGAGTGAGCCAAGTGGATATCAGACAGCCTCATCAAACCAATTCTCGGGGCAGCTTACTGTTGATGGACGAATGAGCGCTCATGAATTGATCCTTGAATATTTGTCGCAGCCTTCAAGCATTGAGAGTGCAAATGGAACATCGACAGAAGAGCTTTCCCAGCGCCTAAAACTCCCCATGGACAAGATCTTGTACGCTTCCTCCCCCTCTCTTTACACCTGTGTACACACAGAAACCTATGATTCATGTGAGGTAGCTTATTCTTGTATTTTACTTTTCTGTGACAGGGTTGGTATCAAGTCTCTTGATGACGAAGGCCTAGTATATTCCACAATCGATGATTCTCACTTCAAGAAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0018130 GO:0019222 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

225

Amino Acids

25.33

Weight (kDa)

5.2

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24490 AT2G24490
fragaria_vesca	FvH4_2g36940 FvH4_2g36940 FvH4_2g36940
malus_domestica	MD08G1131500.v1.1 MD08G1131600.v1.1 MD15G1109200.v1.1
prunus_persica	Prupe.1G461400_v2.0.a1
pyrus_communis	pycom08g11020
rosa_chinensis	RchiOBHm_Chr6g0304821
rosa_laevigata	RLG00000010946
rosa_multiflora	Rmu_ssc0000426.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163440
rosa_rugosa	Rorug06G0335100 Rorug06G0335200
rosa_samantha	Rh6AG446800 Rh6BG454800 Rh6CG460300 Rh6DG447200
rosa_wichuraiana	Rw6G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	301, 400
AcsI	RAATTY	1 cut(s)	73
AfaI	GTAC	3 cut(s)	305, 509, 540
AfeI	AGCGCT	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	5 cut(s)	35, 149, 413, 432, 667
AleI	CACNNNNGTG	1 cut(s)	311
AloI	GAACNNNNNNTCC	2 cut(s)	102, 134
AluBI	AGCT	4 cut(s)	256, 370, 469, 572
AluI	AGCT	4 cut(s)	256, 370, 469, 572
Alw26I	GTCTC	1 cut(s)	621
AlwI	GGATC	2 cut(s)	301, 400
Ama87I	CYCGRG	1 cut(s)	361
Aor51HI	AGCGCT	1 cut(s)	394
AoxI	GGCC	2 cut(s)	182, 631
ApeKI	GCWGC	2 cut(s)	367, 424
ApoI	RAATTY	1 cut(s)	73
AspLEI	GCGC	2 cut(s)	395, 480
AvaI	CYCGRG	1 cut(s)	361
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	379, 436
BccI	CCATC	2 cut(s)	101, 374
BcoDI	GTCTC	1 cut(s)	621
BfaI	CTAG	1 cut(s)	635
BfoI	RGCGCY	2 cut(s)	396, 481
BglII	AGATCT	1 cut(s)	501
BisI	GCNGC	2 cut(s)	368, 425
BlsI	GCNGC	2 cut(s)	369, 426
BmeT110I	CYCGRG	1 cut(s)	361
Bpu10I	CCTNAGC	1 cut(s)	282
Bsa29I	ATCGAT	1 cut(s)	651
BsaJI	CCNNGG	2 cut(s)	259, 492
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 500, 530
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
BseCI	ATCGAT	1 cut(s)	651
BseDI	CCNNGG	2 cut(s)	259, 492
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	296
BseXI	GCAGC	2 cut(s)	379, 436
BseYI	CCCAGC	1 cut(s)	474
BshFI	GGCC	2 cut(s)	184, 633
BshVI	ATCGAT	1 cut(s)	651
BsiHKCI	CYCGRG	1 cut(s)	361
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	621
BsmI	GAATGC	2 cut(s)	4, 170
BsnI	GGCC	2 cut(s)	184, 633
BsoBI	CYCGRG	1 cut(s)	361
Bsp1407I	TGTACA	2 cut(s)	303, 538
Bsp143I	GATC	3 cut(s)	293, 405, 501
Bsp19I	CCATGG	1 cut(s)	492
BspANI	GGCC	2 cut(s)	184, 633
BspCNI	CTCAG	1 cut(s)	295
BspDI	ATCGAT	1 cut(s)	651
BspHI	TCATGA	1 cut(s)	397
BspPI	GGATC	2 cut(s)	301, 400
BspQI	GCTCTTC	1 cut(s)	459
BsrGI	TGTACA	2 cut(s)	303, 538
BssECI	CCNNGG	2 cut(s)	259, 492
BssMI	GATC	3 cut(s)	293, 405, 501
BssT1I	CCWWGG	2 cut(s)	259, 492
Bst4CI	ACNGT	2 cut(s)	246, 376
Bst6I	CTCTTC	2 cut(s)	311, 459
BstAUI	TGTACA	2 cut(s)	303, 538
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	492
BstH2I	RGCGCY	2 cut(s)	396, 481
BstHHI	GCGC	2 cut(s)	395, 480
BstKTI	GATC	3 cut(s)	296, 408, 504
BstMAI	GTCTC	1 cut(s)	621
BstMBI	GATC	3 cut(s)	293, 405, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstV1I	GCAGC	2 cut(s)	379, 436
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
Bsu15I	ATCGAT	1 cut(s)	651
BsuRI	GGCC	2 cut(s)	184, 633
BsuTUI	ATCGAT	1 cut(s)	651
BtgI	CCRYGG	1 cut(s)	492
CciI	TCATGA	1 cut(s)	397
CfoI	GCGC	2 cut(s)	395, 480
ClaI	ATCGAT	1 cut(s)	651
Csp6I	GTAC	3 cut(s)	304, 508, 539
CviAII	CATG	4 cut(s)	41, 398, 493, 561
CviQI	GTAC	3 cut(s)	304, 508, 539
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	3 cut(s)	295, 407, 503
DpnII	GATC	3 cut(s)	293, 405, 501
Eam1104I	CTCTTC	2 cut(s)	311, 459
EarI	CTCTTC	2 cut(s)	311, 459
Eco130I	CCWWGG	2 cut(s)	259, 492
Eco147I	AGGCCT	2 cut(s)	184, 633
Eco32I	GATATC	1 cut(s)	335
Eco47III	AGCGCT	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	361
EcoRV	GATATC	1 cut(s)	335
EcoT14I	CCWWGG	2 cut(s)	259, 492
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	259, 492
FaeI	CATG	4 cut(s)	44, 401, 496, 564
FatI	CATG	4 cut(s)	40, 397, 492, 560
Fnu4HI	GCNGC	2 cut(s)	368, 425
Fsp4HI	GCNGC	2 cut(s)	368, 425
FspBI	CTAG	1 cut(s)	635
GlaI	GCGC	2 cut(s)	394, 479
GluI	GCNGC	2 cut(s)	368, 425
GsaI	CCCAGC	1 cut(s)	478
HaeII	RGCGCY	2 cut(s)	396, 481
HaeIII	GGCC	2 cut(s)	184, 633
HhaI	GCGC	2 cut(s)	395, 480
Hin1II	CATG	4 cut(s)	44, 401, 496, 564
Hin6I	GCGC	2 cut(s)	393, 478
HinP1I	GCGC	2 cut(s)	393, 478
HinfI	GANTC	3 cut(s)	80, 557, 656
Hpy166II	GTNNAC	4 cut(s)	304, 306, 539, 541
Hpy188I	TCNGA	2 cut(s)	138, 339
Hpy188III	TCNNGA	3 cut(s)	398, 620, 667
Hpy8I	GTNNAC	4 cut(s)	304, 306, 539, 541
HpyAV	CCTTC	3 cut(s)	220, 438, 623
HpyCH4III	ACNGT	2 cut(s)	246, 376
HpyCH4V	TGCA	5 cut(s)	4, 23, 170, 228, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	4 cut(s)	44, 401, 496, 564
HspAI	GCGC	2 cut(s)	393, 478
Kzo9I	GATC	3 cut(s)	293, 405, 501
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	6 cut(s)	25, 198, 324, 488, 547, 586
Lsp1109I	GCAGC	2 cut(s)	379, 436
MaeI	CTAG	1 cut(s)	635
MaeIII	GTNAC	2 cut(s)	246, 596
MalI	GATC	3 cut(s)	295, 407, 503
MboI	GATC	3 cut(s)	293, 405, 501
MboII	GAAGA	3 cut(s)	202, 328, 476
MflI	RGATCY	1 cut(s)	501
MluCI	AATT	3 cut(s)	73, 356, 401
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	7 cut(s)	88, 174, 291, 355, 526, 532, 559
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	57, 273
MslI	CAYNNNNRTG	1 cut(s)	311
Mva1269I	GAATGC	2 cut(s)	4, 170
MwoI	GCNNNNNNNGC	1 cut(s)	475
NcoI	CCATGG	1 cut(s)	492
NdeII	GATC	3 cut(s)	293, 405, 501
NlaIII	CATG	4 cut(s)	44, 401, 496, 564
NmuCI	GTSAC	1 cut(s)	596
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	311
PagI	TCATGA	1 cut(s)	397
PceI	AGGCCT	2 cut(s)	184, 633
PciSI	GCTCTTC	1 cut(s)	459
PctI	GAATGC	2 cut(s)	4, 170
PfeI	GAWTC	2 cut(s)	557, 656
PkrI	GCNGC	2 cut(s)	369, 426
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	474
PsuI	RGATCY	1 cut(s)	501
RsaI	GTAC	3 cut(s)	305, 509, 540
RsaNI	GTAC	3 cut(s)	304, 508, 539
RseI	CAYNNNNRTG	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	2 cut(s)	57, 273
SatI	GCNGC	2 cut(s)	368, 425
Sau3AI	GATC	3 cut(s)	293, 405, 501
SchI	GAGTC	1 cut(s)	74
SetI	ASST	9 cut(s)	154, 258, 283, 372, 471, 536, 554, 570, 574
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	3 cut(s)	73, 356, 401
SseBI	AGGCCT	2 cut(s)	184, 633
SspI	AATATT	1 cut(s)	416
SspMI	CTAG	1 cut(s)	635
StuI	AGGCCT	2 cut(s)	184, 633
StyI	CCWWGG	2 cut(s)	259, 492
TaaI	ACNGT	2 cut(s)	246, 376
TaqI	TCGA	3 cut(s)	157, 458, 651
TasI	AATT	3 cut(s)	73, 356, 401
TatI	WGTACW	2 cut(s)	303, 538
TfiI	GAWTC	2 cut(s)	557, 656
Tru1I	TTAA	2 cut(s)	57, 273
Tru9I	TTAA	2 cut(s)	57, 273
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	2 cut(s)	367, 424
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	3 cut(s)	216, 414, 549
XapI	RAATTY	1 cut(s)	73
XspI	CTAG	1 cut(s)	635
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.