MD08G1131500.v1.1

Replication protein A 32 kDa subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
12408628 .. 12409025
398 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1131500.v1.1.491

Sequence Viewer

Length: 147 bp
ATGTTCTCAGGCTCCCAATTCGACGCGACCAACGCCTTCTCCGGCGACGGTTTCTTGGCTTCTCAGTCCACTCAATTCGGCGATTCCACTCCCTCTCCGGCCAAGCCCGGCGAAACTCACGGATTGGTTCCGGTGACGGTGAAGTAG

Protein Analysis

49

Amino Acids

4.91

Weight (kDa)

4.66

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009946)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 99
AoxI GGCC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 108
BmiI GGNNCC 2 cut(s) 13, 129
BmrFI CCNGG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 79, 109
BseMII CTCAG 2 cut(s) 21, 77
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 101
BsiSI CCGG 4 cut(s) 42, 98, 108, 131
BsnI GGCC 1 cut(s) 101
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 2 cut(s) 20, 76
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 13, 129
Bst4CI ACNGT 2 cut(s) 50, 139
BstDEI CTNAG 2 cut(s) 7, 63
BstFNI CGCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 106
BstUI CGCG 1 cut(s) 26
BsuRI GGCC 1 cut(s) 101
CseI GACGC 1 cut(s) 32
CviJI RGCY 4 cut(s) 12, 59, 101, 106
CviKI_1 RGCY 4 cut(s) 12, 59, 101, 106
DdeI CTNAG 2 cut(s) 7, 63
EaeI YGGCCR 1 cut(s) 99
HaeIII GGCC 1 cut(s) 101
HapII CCGG 4 cut(s) 42, 98, 108, 131
HgaI GACGC 1 cut(s) 32
HinfI GANTC 1 cut(s) 83
HpaII CCGG 4 cut(s) 42, 98, 108, 131
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 69
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 2 cut(s) 26, 50
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 2 cut(s) 50, 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 7, 63
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 3 cut(s) 55, 111, 121
MaeIII GTNAC 1 cut(s) 133
MluCI AATT 2 cut(s) 17, 74
MnlI CCTC 1 cut(s) 103
MspI CCGG 4 cut(s) 42, 98, 108, 131
MspR9I CCNGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 108
NlaIV GGNNCC 2 cut(s) 13, 129
NmuCI GTSAC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 13, 129
ScrFI CCNGG 1 cut(s) 108
Sse9I AATT 2 cut(s) 17, 74
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 2 cut(s) 50, 139
TaqI TCGA 1 cut(s) 21
TasI AATT 2 cut(s) 17, 74
TfiI GAWTC 1 cut(s) 83
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspGWI ACGGA 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.