Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009946

Physical Location & Seq

Genomic Coordinates Forward (+)

38580145 .. 38583075

Gene Structure 2931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G461400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTTCTCAAGCAGCCAATTCGACTCCACCTCCGCCTTCTCCGGCGGCGGCTTCATGGCTTCTCAGTCTACTCAGTTCGGTGATTCCACTCCATCTCCGGCCAAGAGTCGCGAGACTCACGGGTTGGTTCCTGTGACAGTGAAGCAGATAAGCGAATCCCATCAATCTGGTGATGAAAAGTCAAATTTTGTAATCAGCGGGGCAGATGTTGCTAATGTATCGGTGGTTGGCATGGTATTTGATAAATCTGAAAGGAACACTGATGTTGGTTTCACTATTGACGATGGAACAGGGCGAATCAAATGCCGAAGATGGGTGAACGAGAATTTTGACTCAAGAGAAATGCAGGAAATAGAAGATGGAATGTATGTTCGTGTTAATGGACACTTGAAAGTCTTTCAAGGTGTTCGACAAATAGTTGCCTTCTCCGTGAGGCCTGTGAAAAACTTTGATGAAGTTACCTTTCACTTCATTGAATGCATACATACCCACTTACAGACATCAAAGTTACAGCTGCAAGGAAATTCTGCAACTCAACCTCAGTCTGTGGACTCATCTCTTAGCACTCCTGTGCGGAGTGGGTCAAGTGGATACCAGACAGCCCCATCAAACCAATTCTCTGGGCAAGTTAGCGTTGATGGGATAAAGGGCTGTGATCAGTTGGTCCTTGACTATCTGCAGCAGCCTTCAAGCATTGGAAAAGAGAAGGGGATACACAGAGATGAACTTTCCCAGCACCTGAAAGTCCCTGTGGAAAAGATATTGGAAGCAATCAGGTCTCTTGAAGAGGAAGGCTTAATATATTCCACGATTGATGAGTTTCACTACAAGTCAGCAGCATATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0018130 GO:0019222 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

283

Amino Acids

30.99

Weight (kDa)

5.48

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24490 AT2G24490
fragaria_vesca	FvH4_2g36940 FvH4_2g36940 FvH4_2g36940
malus_domestica	MD08G1131500.v1.1 MD08G1131600.v1.1 MD15G1109200.v1.1
prunus_persica	Prupe.1G461400_v2.0.a1
pyrus_communis	pycom08g11020
rosa_chinensis	RchiOBHm_Chr6g0304821
rosa_laevigata	RLG00000010946
rosa_multiflora	Rmu_ssc0000426.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163440
rosa_rugosa	Rorug06G0335100 Rorug06G0335200
rosa_samantha	Rh6AG446800 Rh6BG454800 Rh6CG460300 Rh6DG447200
rosa_wichuraiana	Rw6G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	68
AccII	CGCG	1 cut(s)	111
AciI	CCGC	5 cut(s)	33, 45, 48, 198, 574
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	3 cut(s)	184, 325, 523
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	5 cut(s)	391, 401, 476, 690, 785
AleI	CACNNNNGTG	1 cut(s)	569
AloI	GAACNNNNNNTCC	2 cut(s)	354, 386
AluBI	AGCT	1 cut(s)	514
AluI	AGCT	1 cut(s)	514
Alw26I	GTCTC	2 cut(s)	107, 783
AlwNI	CAGNNNCTG	1 cut(s)	739
AoxI	GGCC	2 cut(s)	99, 434
ApeKI	GCWGC	5 cut(s)	12, 514, 679, 682, 836
ApoI	RAATTY	3 cut(s)	184, 325, 523
AspS9I	GGNCC	1 cut(s)	664
AsuHPI	GGTGA	3 cut(s)	92, 182, 328
AvaII	GGWCC	1 cut(s)	664
BbvI	GCAGC	4 cut(s)	24, 501, 691, 694
BccI	CCATC	7 cut(s)	100, 168, 278, 306, 353, 613, 632
BcgI	CGANNNNNNTGC	3 cut(s)	35, 285, 319
BciVI	GTATCC	2 cut(s)	584, 705
BclI	TGATCA	1 cut(s)	655
BcoDI	GTCTC	2 cut(s)	107, 783
BfmI	CTRYAG	1 cut(s)	677
BfuI	GTATCC	2 cut(s)	584, 705
BisI	GCNGC	7 cut(s)	13, 46, 49, 515, 680, 683, 837
BlsI	GCNGC	7 cut(s)	14, 47, 50, 516, 681, 684, 838
Bme18I	GGWCC	1 cut(s)	664
BmgT120I	GGNCC	1 cut(s)	664
BmiI	GGNNCC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	783
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 79, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	3 cut(s)	77, 86, 554
BseXI	GCAGC	4 cut(s)	24, 501, 691, 694
BseYI	CCCAGC	1 cut(s)	732
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	101, 436
BsiSI	CCGG	2 cut(s)	42, 98
BslFI	GGGAC	1 cut(s)	731
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	2 cut(s)	107, 783
BsmFI	GGGAC	1 cut(s)	731
BsmI	GAATGC	1 cut(s)	482
BsnI	GGCC	2 cut(s)	101, 436
Bso31I	GGTCTC	1 cut(s)	783
Bsp143I	GATC	1 cut(s)	655
Bsp68I	TCGCGA	1 cut(s)	111
BspACI	CCGC	5 cut(s)	33, 45, 48, 198, 574
BspANI	GGCC	2 cut(s)	101, 436
BspCNI	CTCAG	3 cut(s)	76, 85, 553
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	681
BspTNI	GGTCTC	1 cut(s)	783
BssMI	GATC	1 cut(s)	655
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	780
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstDEI	CTNAG	4 cut(s)	63, 72, 540, 560
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	658
BstMAI	GTCTC	2 cut(s)	107, 783
BstMBI	GATC	1 cut(s)	655
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	677
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	4 cut(s)	24, 501, 691, 694
BstXI	CCANNNNNNTGG	2 cut(s)	167, 620
BsuI	GTATCC	2 cut(s)	584, 705
BsuRI	GGCC	2 cut(s)	101, 436
BtsIMutI	CAGTG	2 cut(s)	144, 258
BtuMI	TCGCGA	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	739
Cfr13I	GGNCC	1 cut(s)	664
CviAII	CATG	2 cut(s)	55, 232
DdeI	CTNAG	4 cut(s)	63, 72, 540, 560
DpnI	GATC	1 cut(s)	657
DpnII	GATC	1 cut(s)	655
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
EciI	GGCGGA	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	783
Eco47I	GGWCC	1 cut(s)	664
EcoT22I	ATGCAT	1 cut(s)	482
FaeI	CATG	2 cut(s)	58, 235
FaiI	YATR	8 cut(s)	56, 233, 369, 482, 486, 802, 841, 843
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	2 cut(s)	54, 231
FauI	CCCGC	1 cut(s)	191
FauNDI	CATATG	1 cut(s)	841
FbaI	TGATCA	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	7 cut(s)	13, 46, 49, 515, 680, 683, 837
Fsp4HI	GCNGC	7 cut(s)	13, 46, 49, 515, 680, 683, 837
GluI	GCNGC	7 cut(s)	13, 46, 49, 515, 680, 683, 837
GsaI	CCCAGC	1 cut(s)	736
HaeIII	GGCC	2 cut(s)	101, 436
HapII	CCGG	2 cut(s)	42, 98
Hin1II	CATG	2 cut(s)	58, 235
HinfI	GANTC	8 cut(s)	23, 83, 106, 115, 155, 297, 332, 551
HpaII	CCGG	2 cut(s)	42, 98
HphI	GGTGA	3 cut(s)	92, 182, 328
Hpy166II	GTNNAC	3 cut(s)	69, 319, 550
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	3 cut(s)	110, 336, 782
Hpy8I	GTNNAC	3 cut(s)	69, 319, 550
HpyAV	CCTTC	5 cut(s)	46, 433, 696, 700, 785
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	5 cut(s)	346, 480, 517, 530, 679
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	4 cut(s)	63, 72, 540, 560
Hsp92II	CATG	2 cut(s)	58, 235
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	1 cut(s)	655
Lsp1109I	GCAGC	4 cut(s)	24, 501, 691, 694
MaeIII	GTNAC	3 cut(s)	133, 457, 507
MalI	GATC	1 cut(s)	657
MboI	GATC	1 cut(s)	655
MboII	GAAGA	3 cut(s)	321, 368, 797
MluCI	AATT	5 cut(s)	17, 184, 325, 523, 614
MlyI	GAGTC	5 cut(s)	17, 109, 115, 326, 545
MnlI	CCTC	4 cut(s)	40, 426, 549, 781
Mph1103I	ATGCAT	1 cut(s)	482
MseI	TTAA	2 cut(s)	378, 797
MslI	CAYNNNNRTG	2 cut(s)	569, 720
MspA1I	CMGCKG	2 cut(s)	198, 514
MspI	CCGG	2 cut(s)	42, 98
Mva1269I	GAATGC	1 cut(s)	482
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeI	CATATG	1 cut(s)	841
NdeII	GATC	1 cut(s)	655
NlaIII	CATG	2 cut(s)	58, 235
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	133
NruI	TCGCGA	1 cut(s)	111
NsiI	ATGCAT	1 cut(s)	482
OliI	CACNNNNGTG	1 cut(s)	569
PceI	AGGCCT	1 cut(s)	436
PctI	GAATGC	1 cut(s)	482
PfeI	GAWTC	3 cut(s)	83, 155, 297
PkrI	GCNGC	7 cut(s)	14, 47, 50, 516, 681, 684, 838
PleI	GAGTC	5 cut(s)	17, 109, 114, 326, 545
PpsI	GAGTC	5 cut(s)	17, 109, 114, 326, 545
PspFI	CCCAGC	1 cut(s)	732
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	664
PstI	CTGCAG	1 cut(s)	681
PstNI	CAGNNNCTG	1 cut(s)	739
PvuII	CAGCTG	1 cut(s)	514
RruI	TCGCGA	1 cut(s)	111
RseI	CAYNNNNRTG	2 cut(s)	569, 720
SaqAI	TTAA	2 cut(s)	378, 797
SatI	GCNGC	7 cut(s)	13, 46, 49, 515, 680, 683, 837
Sau3AI	GATC	1 cut(s)	655
Sau96I	GGNCC	1 cut(s)	664
SchI	GAGTC	5 cut(s)	17, 109, 115, 326, 545
SetI	ASST	7 cut(s)	32, 406, 464, 516, 541, 741, 779
SfcI	CTRYAG	1 cut(s)	677
SinI	GGWCC	1 cut(s)	664
SmiMI	CAYNNNNRTG	2 cut(s)	569, 720
SmlI	CTYRAG	2 cut(s)	7, 334
SmoI	CTYRAG	2 cut(s)	7, 334
Sse9I	AATT	5 cut(s)	17, 184, 325, 523, 614
SseBI	AGGCCT	1 cut(s)	436
SsiI	CCGC	5 cut(s)	33, 45, 48, 198, 574
StuI	AGGCCT	1 cut(s)	436
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	2 cut(s)	21, 409
TasI	AATT	5 cut(s)	17, 184, 325, 523, 614
TauI	GCSGC	2 cut(s)	48, 51
TfiI	GAWTC	3 cut(s)	83, 155, 297
Tru1I	TTAA	2 cut(s)	378, 797
Tru9I	TTAA	2 cut(s)	378, 797
TscAI	CASTG	2 cut(s)	144, 265
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	5 cut(s)	12, 514, 679, 682, 836
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	5 cut(s)	43, 189, 460, 468, 738
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	2 cut(s)	144, 265
VpaK11BI	GGWCC	1 cut(s)	664
XapI	RAATTY	3 cut(s)	184, 325, 523
XmiI	GTMKAC	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.