Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009946

Physical Location & Seq

Genomic Coordinates Reverse (-)

63342357 .. 63345485

Gene Structure 3129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG446800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTTCTCAGGCAGCCAATTCGACGCCACCTCCGCCTTCGGCGGCGGCGGGTTCATGTCTTCTCAGGCCACTCAACACGGCGATTCCAATCCCTCCGCTGCTAGGAGTCGTGAAAGTCACGGACTGGTTCCTGTGACGGTGAAGCAGATAAGCGAGGCTTATCAGTCTGGTGATGAGAAATCAAACTTTGTGATCGGCGGTGCTGATGTGGCCAATGTATCTGTGGTTGGGATGGTCTTTGAGAAAACCGAGAAGGCCACTGATGTTTCCTTTACTGTTGATGATGGAACGGGGCGATTCAAATGCCGAAGATGGGTCAATGAGAATTTTGACTCACAAGAAATGGAGGAAATACAAGATGGAATGTATGTTCGTGTCAATGGACATCTGAAAGCCTTTCAAGGTGTTCGACAGATAGTTGCATTCTCTGTGAGGCCTGTGAAGAACTTTGATGAAGTTGCCTTCCACTACATTGAGTGCATATATAACCACTTACTGCTACAGAAGCTCCAAGGAAATGCTGTTAATCAACCTCAGCCTATGGGATCATCTGTGTACACTCCTGTGAAGAGTGAGCCAAGTGGATATCAGACAGCCTCATCAAACCAAGTGCGTTACCTGAGTAGGACCAGTTACATGAGTAGGACAAGTTACATTTCAAACTATTCCTGCATAGCATGTGCAATTAATGGTTCAATTTTTGTAGTTCTCGGGGCAGTTTACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0018130 GO:0019222 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

242

Amino Acids

26.55

Weight (kDa)

6.2

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	73 - 146	4.6e-10	OB-fold nucleic acid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24490 AT2G24490
fragaria_vesca	FvH4_2g36940 FvH4_2g36940 FvH4_2g36940
malus_domestica	MD08G1131500.v1.1 MD08G1131600.v1.1 MD15G1109200.v1.1
prunus_persica	Prupe.1G461400_v2.0.a1
pyrus_communis	pycom08g11020
rosa_chinensis	RchiOBHm_Chr6g0304821
rosa_laevigata	RLG00000010946
rosa_multiflora	Rmu_ssc0000426.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163440
rosa_rugosa	Rorug06G0335100 Rorug06G0335200
rosa_samantha	Rh6AG446800 Rh6BG454800 Rh6CG460300 Rh6DG447200
rosa_wichuraiana	Rw6G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	33, 42, 45, 48, 96, 198
AclWI	GGATC	1 cut(s)	553
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	325
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	2 cut(s)	102, 313
AgsI	TTSAA	4 cut(s)	301, 401, 660, 696
AleI	CACNNNNGTG	1 cut(s)	563
AloI	GAACNNNNNNTCC	2 cut(s)	354, 386
AluBI	AGCT	1 cut(s)	508
AluI	AGCT	1 cut(s)	508
AlwI	GGATC	1 cut(s)	553
Ama87I	CYCGRG	1 cut(s)	710
AoxI	GGCC	4 cut(s)	66, 210, 255, 434
ApeKI	GCWGC	2 cut(s)	12, 98
ApoI	RAATTY	1 cut(s)	325
AseI	ATTAAT	1 cut(s)	687
AspS9I	GGNCC	1 cut(s)	627
AsuHPI	GGTGA	2 cut(s)	151, 182
AvaI	CYCGRG	1 cut(s)	710
AvaII	GGWCC	1 cut(s)	627
BalI	TGGCCA	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	2 cut(s)	24, 85
BccI	CCATC	4 cut(s)	226, 278, 306, 353
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	3 cut(s)	35, 285, 319
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	500
BisI	GCNGC	4 cut(s)	13, 43, 46, 99
BlsI	GCNGC	4 cut(s)	14, 44, 47, 100
Bme18I	GGWCC	1 cut(s)	627
BmeT110I	CYCGRG	1 cut(s)	710
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	511
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 313
Bse1I	ACTGG	2 cut(s)	129, 630
Bse8I	GATNNNNATC	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	1 cut(s)	237
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	2 cut(s)	102, 313
BseMII	CTCAG	4 cut(s)	21, 77, 548, 611
BseNI	ACTGG	2 cut(s)	129, 630
BseXI	GCAGC	2 cut(s)	24, 85
BshFI	GGCC	4 cut(s)	68, 212, 257, 436
BsiHKCI	CYCGRG	1 cut(s)	710
BslI	CCNNNNNNNGG	2 cut(s)	102, 313
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	4 cut(s)	68, 212, 257, 436
BsoBI	CYCGRG	1 cut(s)	710
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	2 cut(s)	192, 545
BspACI	CCGC	6 cut(s)	33, 42, 45, 48, 96, 198
BspANI	GGCC	4 cut(s)	68, 212, 257, 436
BspCNI	CTCAG	4 cut(s)	20, 76, 547, 612
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	553
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	2 cut(s)	129, 630
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	2 cut(s)	192, 545
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	511
Bst4CI	ACNGT	2 cut(s)	139, 277
Bst6I	CTCTTC	1 cut(s)	563
BstACI	GRCGYC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	555
BstDEI	CTNAG	4 cut(s)	7, 63, 534, 620
BstF5I	GGATG	1 cut(s)	237
BstKTI	GATC	2 cut(s)	195, 548
BstMBI	GATC	2 cut(s)	192, 545
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 209, 505
BstNSI	RCATGY	1 cut(s)	681
BstSFI	CTRYAG	1 cut(s)	500
BstV1I	GCAGC	2 cut(s)	24, 85
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	4 cut(s)	68, 212, 257, 436
BtsCI	GGATG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	627
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	3 cut(s)	55, 637, 678
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	4 cut(s)	7, 63, 534, 620
DpnI	GATC	2 cut(s)	194, 547
DpnII	GATC	2 cut(s)	192, 545
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	511
Eco147I	AGGCCT	1 cut(s)	436
Eco32I	GATATC	1 cut(s)	587
Eco47I	GGWCC	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	710
EcoRV	GATATC	1 cut(s)	587
EcoT14I	CCWWGG	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	3 cut(s)	58, 640, 681
FaiI	YATR	9 cut(s)	56, 369, 482, 484, 486, 542, 638, 674, 679
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FatI	CATG	3 cut(s)	54, 636, 677
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	4 cut(s)	13, 43, 46, 99
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	4 cut(s)	13, 43, 46, 99
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	4 cut(s)	13, 43, 46, 99
HaeIII	GGCC	4 cut(s)	68, 212, 257, 436
HgaI	GACGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	3 cut(s)	58, 640, 681
HinfI	GANTC	4 cut(s)	83, 106, 297, 332
HphI	GGTGA	2 cut(s)	151, 182
Hpy166II	GTNNAC	3 cut(s)	556, 558, 721
Hpy188I	TCNGA	2 cut(s)	390, 591
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	3 cut(s)	556, 558, 721
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	46, 247, 472
HpyCH4III	ACNGT	2 cut(s)	139, 277
HpyCH4V	TGCA	4 cut(s)	422, 480, 672, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 209, 505
HpyF3I	CTNAG	4 cut(s)	7, 63, 534, 620
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	58, 640, 681
Kzo9I	GATC	2 cut(s)	192, 545
LmnI	GCTCC	1 cut(s)	513
LpnPI	CCDG	9 cut(s)	50, 110, 144, 153, 450, 576, 632, 643, 682
Lsp1109I	GCAGC	2 cut(s)	24, 85
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	5 cut(s)	116, 133, 614, 632, 650
MalI	GATC	2 cut(s)	194, 547
MboI	GATC	2 cut(s)	192, 545
MboII	GAAGA	4 cut(s)	51, 321, 454, 580
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	4 cut(s)	17, 325, 684, 696
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	115, 326
MnlI	CCTC	7 cut(s)	40, 103, 148, 340, 426, 543, 607
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	2 cut(s)	525, 687
MslI	CAYNNNNRTG	1 cut(s)	563
Msp20I	TGGCCA	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	422
MwoI	GCNNNNNNNGC	3 cut(s)	32, 209, 505
NdeII	GATC	2 cut(s)	192, 545
NlaIII	CATG	3 cut(s)	58, 640, 681
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	2 cut(s)	116, 133
NspI	RCATGY	1 cut(s)	681
OliI	CACNNNNGTG	1 cut(s)	563
PceI	AGGCCT	1 cut(s)	436
PctI	GAATGC	1 cut(s)	422
PfeI	GAWTC	2 cut(s)	83, 297
PkrI	GCNGC	4 cut(s)	14, 44, 47, 100
PleI	GAGTC	2 cut(s)	114, 326
PpsI	GAGTC	2 cut(s)	114, 326
PshBI	ATTAAT	1 cut(s)	687
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	627
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
RseI	CAYNNNNRTG	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	525, 687
SatI	GCNGC	4 cut(s)	13, 43, 46, 99
Sau3AI	GATC	2 cut(s)	192, 545
Sau96I	GGNCC	1 cut(s)	627
SchI	GAGTC	2 cut(s)	115, 326
SetI	ASST	5 cut(s)	32, 406, 510, 535, 621
SfcI	CTRYAG	1 cut(s)	500
SinI	GGWCC	1 cut(s)	627
SmiMI	CAYNNNNRTG	1 cut(s)	563
Sse9I	AATT	4 cut(s)	17, 325, 684, 696
SseBI	AGGCCT	1 cut(s)	436
SsiI	CCGC	6 cut(s)	33, 42, 45, 48, 96, 198
SspMI	CTAG	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	2 cut(s)	139, 277
TaqI	TCGA	2 cut(s)	21, 409
TasI	AATT	4 cut(s)	17, 325, 684, 696
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	2 cut(s)	45, 48
TfiI	GAWTC	2 cut(s)	83, 297
Tru1I	TTAA	2 cut(s)	525, 687
Tru9I	TTAA	2 cut(s)	525, 687
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	2 cut(s)	116, 133
TseI	GCWGC	2 cut(s)	12, 98
Tsp45I	GTSAC	2 cut(s)	116, 133
TspDTI	ATGAA	2 cut(s)	43, 468
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	627
VspI	ATTAAT	1 cut(s)	687
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	1 cut(s)	681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.