Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009946

Physical Location & Seq

Genomic Coordinates Forward (+)

5697021 .. 5700125

Gene Structure 3105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAAGAGATTGAGCGGGAATATCGAAACGACCTTGGCGGGAAGACAATTTAATCCCTATATACCTCATATAAATACCACAGTTTTATCTCAGACCTCCTACCCCGCCACTTTCACTCTCTCTAGATCAGATCGATTTCTCTCTCCAAGGGTTTCAGAAATGTTCTCAGGCAGCCAATTCGACGCCACCTCCGCCTTCGGCGGCGGCGGGTTCATGTCTTCTCAGGCCACTCAACACGGCGATTCCAATCCCTCCGCTGCTAGGAGTCGTGAAAGTCACGGACTGGTTCCTGTGACGGTGAAGCAGATAAGCGAGGCTTCTCAGTCTGGTGATGAGAAATCAAACTTTGTGATCGGCGGTGCTGATGTGGCCAATGTATCTGTGGTTGGGATGGTCTTTGAGAAAACCGAGAAGACCACTGATGTTTCCTTTACTGTCGATGATGGAACGGGGCGAATCAAATGCCGGAGATGGGTCAATGAGAATTTTGACTCACAAGAAATGGAGGAAATACAAGATGGAATGTATGTTCGTGTCAATGGACATCTGAAAGCCTTTCAAGGTGTTCGACAGATAGTTGCATTCTCTGTGAGGCCTGTGAAGAACTTTGATGAAGTTGCCTTCCACTACATTGAGTGCATATATAACCACTTACAGTTACAGAAGCTGCAAGGAAATGCTGTTAATCAGCCTCAGCCTATGGGATCATCTGTGTACACTCCTGTGAAGAGTGAGCCAAGTGGATTTCAGACAGCCTCATCAAACCAATTCTCAGGGCAATTTACTATAGATGGACGAATGAGCGCTCCTGATCTGATCCTTGAATATTTATCACAGCCTTCAAGCATTGAGAGTGCAAACGGAACATCGACTGAAGAGCTTTCCCAGCGCCTAAAACTCCCCATGGACAAGATCTTGGTTGGTATCAAGTCTCTTGATGATGAAGGCCTAGTATACTCCACAATCGATGATTCTCACTTCAAGAAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0018130 GO:0019222 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

330

Amino Acids

36.23

Weight (kDa)

5.55

Isoelectric Point (pI)

54.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	126 - 199	2.3e-10	OB-fold nucleic acid binding domain
RPA_C	PF08784	217 - 324	1.8e-12	Replication protein A C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24490 AT2G24490
fragaria_vesca	FvH4_2g36940 FvH4_2g36940 FvH4_2g36940
malus_domestica	MD08G1131500.v1.1 MD08G1131600.v1.1 MD15G1109200.v1.1
prunus_persica	Prupe.1G461400_v2.0.a1
pyrus_communis	pycom08g11020
rosa_chinensis	RchiOBHm_Chr6g0304821
rosa_laevigata	RLG00000010946
rosa_multiflora	Rmu_ssc0000426.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163440
rosa_rugosa	Rorug06G0335100 Rorug06G0335200
rosa_samantha	Rh6AG446800 Rh6BG454800 Rh6CG460300 Rh6DG447200
rosa_wichuraiana	Rw6G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	954
AciI	CCGC	9 cut(s)	15, 38, 105, 192, 201, 204, 207, 255, 357
AclWI	GGATC	2 cut(s)	712, 811
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	484
AcuI	CTGAAG	1 cut(s)	894
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	716
AfeI	AGCGCT	1 cut(s)	805
AfiI	CCNNNNNNNGG	2 cut(s)	261, 472
AgsI	TTSAA	4 cut(s)	560, 824, 843, 982
AleI	CACNNNNGTG	1 cut(s)	722
AloI	GAACNNNNNNTCC	2 cut(s)	513, 545
AluBI	AGCT	2 cut(s)	667, 880
AluI	AGCT	2 cut(s)	667, 880
Alw26I	GTCTC	1 cut(s)	936
AlwI	GGATC	2 cut(s)	712, 811
AlwNI	CAGNNNCTG	1 cut(s)	667
Aor51HI	AGCGCT	1 cut(s)	805
AoxI	GGCC	4 cut(s)	225, 369, 593, 946
ApeKI	GCWGC	3 cut(s)	171, 257, 667
ApoI	RAATTY	1 cut(s)	484
AspLEI	GCGC	2 cut(s)	806, 891
AsuHPI	GGTGA	2 cut(s)	310, 341
BalI	TGGCCA	1 cut(s)	371
BbsI	GAAGAC	3 cut(s)	49, 210, 419
BbvCI	CCTCAGC	1 cut(s)	693
BbvI	GCAGC	3 cut(s)	183, 244, 654
BccI	CCATC	5 cut(s)	385, 437, 465, 512, 785
BceAI	ACGGC	1 cut(s)	253
BcgI	CGANNNNNNTGC	4 cut(s)	160, 194, 444, 478
BcoDI	GTCTC	1 cut(s)	936
BfaI	CTAG	3 cut(s)	123, 261, 950
BfmI	CTRYAG	1 cut(s)	786
BfoI	RGCGCY	2 cut(s)	807, 892
BglII	AGATCT	1 cut(s)	912
BisI	GCNGC	5 cut(s)	172, 202, 205, 258, 668
BlsI	GCNGC	5 cut(s)	173, 203, 206, 259, 669
BmiI	GGNNCC	1 cut(s)	288
BpiI	GAAGAC	3 cut(s)	49, 210, 419
Bpu10I	CCTNAGC	1 cut(s)	693
Bsa29I	ATCGAT	2 cut(s)	133, 966
BsaBI	GATNNNNATC	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	33, 146, 903
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 472
Bse1I	ACTGG	1 cut(s)	288
Bse8I	GATNNNNATC	1 cut(s)	246
BseCI	ATCGAT	2 cut(s)	133, 966
BseDI	CCNNGG	3 cut(s)	33, 146, 903
BseGI	GGATG	1 cut(s)	396
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	261, 472
BseMII	CTCAG	6 cut(s)	104, 180, 236, 335, 707, 786
BseNI	ACTGG	1 cut(s)	288
BseXI	GCAGC	3 cut(s)	183, 244, 654
BseYI	CCCAGC	1 cut(s)	885
BshFI	GGCC	4 cut(s)	227, 371, 595, 948
BshVI	ATCGAT	2 cut(s)	133, 966
BsiSI	CCGG	1 cut(s)	466
BslI	CCNNNNNNNGG	2 cut(s)	261, 472
BsmAI	GTCTC	1 cut(s)	936
BsmI	GAATGC	1 cut(s)	581
BsnI	GGCC	4 cut(s)	227, 371, 595, 948
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	7 cut(s)	125, 130, 351, 704, 811, 816, 912
Bsp19I	CCATGG	1 cut(s)	903
BspACI	CCGC	9 cut(s)	15, 38, 105, 192, 201, 204, 207, 255, 357
BspANI	GGCC	4 cut(s)	227, 371, 595, 948
BspCNI	CTCAG	6 cut(s)	103, 179, 235, 334, 706, 785
BspDI	ATCGAT	2 cut(s)	133, 966
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	712, 811
BspQI	GCTCTTC	1 cut(s)	870
BsrBI	CCGCTC	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	3 cut(s)	33, 146, 903
BssMI	GATC	7 cut(s)	125, 130, 351, 704, 811, 816, 912
BssNAI	GTATAC	1 cut(s)	955
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	3 cut(s)	33, 146, 903
Bst1107I	GTATAC	1 cut(s)	955
Bst4CI	ACNGT	4 cut(s)	82, 298, 436, 657
Bst6I	CTCTTC	2 cut(s)	722, 870
BstACI	GRCGYC	1 cut(s)	183
BstAUI	TGTACA	1 cut(s)	714
BstDEI	CTNAG	6 cut(s)	90, 166, 222, 321, 693, 772
BstDSI	CCRYGG	1 cut(s)	903
BstF5I	GGATG	1 cut(s)	396
BstH2I	RGCGCY	2 cut(s)	807, 892
BstHHI	GCGC	2 cut(s)	806, 891
BstKTI	GATC	7 cut(s)	128, 133, 354, 707, 814, 819, 915
BstMAI	GTCTC	1 cut(s)	936
BstMBI	GATC	7 cut(s)	125, 130, 351, 704, 811, 816, 912
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 368, 886
BstSFI	CTRYAG	1 cut(s)	786
BstV1I	GCAGC	3 cut(s)	183, 244, 654
BstV2I	GAAGAC	3 cut(s)	49, 210, 419
BstX2I	RGATCY	1 cut(s)	912
BstYI	RGATCY	1 cut(s)	912
BstZ17I	GTATAC	1 cut(s)	955
Bsu15I	ATCGAT	2 cut(s)	133, 966
BsuRI	GGCC	4 cut(s)	227, 371, 595, 948
BsuTUI	ATCGAT	2 cut(s)	133, 966
BtgI	CCRYGG	1 cut(s)	903
BtsCI	GGATG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	417
CaiI	CAGNNNCTG	1 cut(s)	667
CfoI	GCGC	2 cut(s)	806, 891
ClaI	ATCGAT	2 cut(s)	133, 966
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	715
CviAII	CATG	2 cut(s)	214, 904
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	6 cut(s)	90, 166, 222, 321, 693, 772
DpnI	GATC	7 cut(s)	127, 132, 353, 706, 813, 818, 914
DpnII	GATC	7 cut(s)	125, 130, 351, 704, 811, 816, 912
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	722, 870
EarI	CTCTTC	2 cut(s)	722, 870
EciI	GGCGGA	1 cut(s)	181
Eco130I	CCWWGG	3 cut(s)	33, 146, 903
Eco147I	AGGCCT	2 cut(s)	595, 948
Eco47III	AGCGCT	1 cut(s)	805
Eco57I	CTGAAG	1 cut(s)	894
EcoT14I	CCWWGG	3 cut(s)	33, 146, 903
ErhI	CCWWGG	3 cut(s)	33, 146, 903
FaeI	CATG	2 cut(s)	217, 907
FalI	AAGNNNNNCTT	2 cut(s)	301, 333
FatI	CATG	2 cut(s)	213, 903
FauI	CCCGC	4 cut(s)	8, 31, 112, 200
FblI	GTMKAC	1 cut(s)	954
Fnu4HI	GCNGC	5 cut(s)	172, 202, 205, 258, 668
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	5 cut(s)	172, 202, 205, 258, 668
FspBI	CTAG	3 cut(s)	123, 261, 950
GlaI	GCGC	2 cut(s)	805, 890
GluI	GCNGC	5 cut(s)	172, 202, 205, 258, 668
GsaI	CCCAGC	1 cut(s)	889
HaeII	RGCGCY	2 cut(s)	807, 892
HaeIII	GGCC	4 cut(s)	227, 371, 595, 948
HapII	CCGG	1 cut(s)	466
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	806, 891
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	217, 907
Hin6I	GCGC	2 cut(s)	804, 889
HinP1I	GCGC	2 cut(s)	804, 889
HinfI	GANTC	5 cut(s)	242, 265, 456, 491, 971
HpaII	CCGG	1 cut(s)	466
HphI	GGTGA	2 cut(s)	310, 341
Hpy166II	GTNNAC	3 cut(s)	715, 717, 955
Hpy188I	TCNGA	6 cut(s)	93, 130, 157, 549, 750, 816
Hpy188III	TCNNGA	5 cut(s)	123, 269, 809, 935, 982
Hpy8I	GTNNAC	3 cut(s)	715, 717, 955
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	4 cut(s)	205, 631, 849, 938
HpyCH4III	ACNGT	4 cut(s)	82, 298, 436, 657
HpyCH4V	TGCA	4 cut(s)	581, 639, 670, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 368, 886
HpyF3I	CTNAG	6 cut(s)	90, 166, 222, 321, 693, 772
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	217, 907
HspAI	GCGC	2 cut(s)	804, 889
Kzo9I	GATC	7 cut(s)	125, 130, 351, 704, 811, 816, 912
LguI	GCTCTTC	1 cut(s)	870
LmnI	GCTCC	1 cut(s)	811
Lsp1109I	GCAGC	3 cut(s)	183, 244, 654
MaeI	CTAG	3 cut(s)	123, 261, 950
MaeIII	GTNAC	3 cut(s)	275, 292, 657
MalI	GATC	7 cut(s)	127, 132, 353, 706, 813, 818, 914
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	7 cut(s)	125, 130, 351, 704, 811, 816, 912
MboII	GAAGA	7 cut(s)	16, 54, 210, 424, 613, 739, 887
MflI	RGATCY	1 cut(s)	912
MlsI	TGGCCA	1 cut(s)	371
MluCI	AATT	5 cut(s)	47, 176, 484, 767, 779
MluNI	TGGCCA	1 cut(s)	371
MlyI	GAGTC	2 cut(s)	274, 485
MnlI	CCTC	9 cut(s)	75, 106, 199, 262, 307, 499, 585, 702, 766
Mox20I	TGGCCA	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	371
MseI	TTAA	2 cut(s)	51, 684
MslI	CAYNNNNRTG	1 cut(s)	722
Msp20I	TGGCCA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	466
Mva1269I	GAATGC	1 cut(s)	581
MwoI	GCNNNNNNNGC	3 cut(s)	191, 368, 886
NcoI	CCATGG	1 cut(s)	903
NdeII	GATC	7 cut(s)	125, 130, 351, 704, 811, 816, 912
NlaIII	CATG	2 cut(s)	217, 907
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	2 cut(s)	275, 292
OliI	CACNNNNGTG	1 cut(s)	722
PceI	AGGCCT	2 cut(s)	595, 948
PciSI	GCTCTTC	1 cut(s)	870
PctI	GAATGC	1 cut(s)	581
PfeI	GAWTC	3 cut(s)	242, 456, 971
PkrI	GCNGC	5 cut(s)	173, 203, 206, 259, 669
PleI	GAGTC	2 cut(s)	273, 485
PpsI	GAGTC	2 cut(s)	273, 485
PspFI	CCCAGC	1 cut(s)	885
PspN4I	GGNNCC	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	912
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
RseI	CAYNNNNRTG	1 cut(s)	722
SapI	GCTCTTC	1 cut(s)	870
SaqAI	TTAA	2 cut(s)	51, 684
SatI	GCNGC	5 cut(s)	172, 202, 205, 258, 668
Sau3AI	GATC	7 cut(s)	125, 130, 351, 704, 811, 816, 912
SchI	GAGTC	2 cut(s)	274, 485
SetI	ASST	7 cut(s)	35, 67, 98, 191, 565, 669, 882
SfcI	CTRYAG	1 cut(s)	786
SmiMI	CAYNNNNRTG	1 cut(s)	722
Sse9I	AATT	5 cut(s)	47, 176, 484, 767, 779
SseBI	AGGCCT	2 cut(s)	595, 948
SsiI	CCGC	9 cut(s)	15, 38, 105, 192, 201, 204, 207, 255, 357
SspI	AATATT	1 cut(s)	827
SspMI	CTAG	3 cut(s)	123, 261, 950
StuI	AGGCCT	2 cut(s)	595, 948
StyI	CCWWGG	3 cut(s)	33, 146, 903
TaaI	ACNGT	4 cut(s)	82, 298, 436, 657
TaqI	TCGA	7 cut(s)	24, 133, 180, 438, 568, 869, 966
TasI	AATT	5 cut(s)	47, 176, 484, 767, 779
TatI	WGTACW	1 cut(s)	714
TauI	GCSGC	2 cut(s)	204, 207
TfiI	GAWTC	3 cut(s)	242, 456, 971
Tru1I	TTAA	2 cut(s)	51, 684
Tru9I	TTAA	2 cut(s)	51, 684
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	2 cut(s)	275, 292
TseI	GCWGC	3 cut(s)	171, 257, 667
Tsp45I	GTSAC	2 cut(s)	275, 292
TspDTI	ATGAA	4 cut(s)	17, 202, 627, 957
TspGWI	ACGGA	2 cut(s)	294, 876
TspRI	CASTG	1 cut(s)	424
XapI	RAATTY	1 cut(s)	484
XbaI	TCTAGA	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	954
XspI	CTAG	3 cut(s)	123, 261, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.