Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009946

Physical Location & Seq

Genomic Coordinates Forward (+)

12409027 .. 12411362

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1131600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTGCAGATGTTGCCAATGTATCGGTGGTTGGGATGGTTTTCGATAAAGCCGAAAGGAACACTGATGTTGGTTTCACTGTGGATGACGGGACAGGGCGAATCAAGTGCTGAAGATGGTAACTTTTTGCATTGTCCGGTGAATGAGAATTTTGACTCAAGAAATGCAGGAAATAGAGTAAATGGAATGTATGTTCGTGTTAACGGATACTTGAATGTCCTTCAAGGTGTTCGACAGATTATTGCCTTTCTGCCTGTGAAAAACTTTGACGAAGTTACCTTCCACTTCATTGAATGCATACATACCCACTTGCAGATGTCCAAGTTACAGCTACAAGGGAATGCTGCCACTCAAACCCGGCCTATGAACTCATCTTTGAACACTCCTGTGGGGAGCAGGTCAACTGGATATCAGACAGCCCCGTCAAACCAATTCTCCGGGCAATTTAGCGTTCATGGACTAAAGAGCTGTGATCAGTTGGTCCTTGACTATCTGCAGCAGCCTTCAAGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0018130 GO:0019222 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

172

Amino Acids

19.21

Weight (kDa)

8.51

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24490 AT2G24490
fragaria_vesca	FvH4_2g36940 FvH4_2g36940 FvH4_2g36940
malus_domestica	MD08G1131500.v1.1 MD08G1131600.v1.1 MD15G1109200.v1.1
prunus_persica	Prupe.1G461400_v2.0.a1
pyrus_communis	pycom08g11020
rosa_chinensis	RchiOBHm_Chr6g0304821
rosa_laevigata	RLG00000010946
rosa_multiflora	Rmu_ssc0000426.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163440
rosa_rugosa	Rorug06G0335100 Rorug06G0335200
rosa_samantha	Rh6AG446800 Rh6BG454800 Rh6CG460300 Rh6DG447200
rosa_wichuraiana	Rw6G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	421
Acc36I	ACCTGC	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	132
AgsI	TTSAA	5 cut(s)	214, 224, 293, 379, 507
AleI	CACNNNNGTG	1 cut(s)	386
AloI	GAACNNNNNNTCC	2 cut(s)	177, 209
AluBI	AGCT	2 cut(s)	331, 468
AluI	AGCT	2 cut(s)	331, 468
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	344, 496, 499
ApoI	RAATTY	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	481
AsuC2I	CCSGG	2 cut(s)	358, 439
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	481
BbvI	GCAGC	3 cut(s)	331, 508, 511
BccI	CCATC	2 cut(s)	30, 110
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BciVI	GTATCC	1 cut(s)	200
BclI	TGATCA	1 cut(s)	472
BcnI	CCSGG	2 cut(s)	358, 439
BfmI	CTRYAG	1 cut(s)	494
BfuAI	ACCTGC	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	3 cut(s)	345, 497, 500
BlsI	GCNGC	3 cut(s)	346, 498, 501
Bme1390I	CCNGG	2 cut(s)	358, 439
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmrFI	CCNGG	2 cut(s)	358, 439
BpuEI	CTTGAG	1 cut(s)	142
BpuMI	CCSGG	2 cut(s)	358, 439
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bse1I	ACTGG	1 cut(s)	409
BseGI	GGATG	2 cut(s)	41, 90
BseNI	ACTGG	1 cut(s)	409
BseXI	GCAGC	3 cut(s)	331, 508, 511
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	361
BsiSI	CCGG	3 cut(s)	137, 358, 438
BslFI	GGGAC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	105
BsmI	GAATGC	2 cut(s)	299, 346
BsnI	GGCC	1 cut(s)	361
Bsp143I	GATC	1 cut(s)	472
BspANI	GGCC	1 cut(s)	361
BspMAI	CTGCAG	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	409
BssMI	GATC	1 cut(s)	472
Bst4CI	ACNGT	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstF5I	GGATG	2 cut(s)	41, 90
BstKTI	GATC	1 cut(s)	475
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	2 cut(s)	356, 437
BstSFI	CTRYAG	1 cut(s)	494
BstV1I	GCAGC	3 cut(s)	331, 508, 511
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	41, 90
BtsIMutI	CAGTG	2 cut(s)	62, 77
BveI	ACCTGC	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	481
CviAII	CATG	2 cut(s)	455, 511
CviJI	RGCY	6 cut(s)	52, 331, 361, 419, 468, 502
CviKI_1	RGCY	6 cut(s)	52, 331, 361, 419, 468, 502
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
DrdI	GACNNNNNNGTC	1 cut(s)	421
DseDI	GACNNNNNNGTC	1 cut(s)	421
Eco32I	GATATC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	410
EcoT22I	ATGCAT	1 cut(s)	299
FaeI	CATG	2 cut(s)	458, 514
FaiI	YATR	6 cut(s)	192, 299, 303, 365, 456, 512
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	2 cut(s)	454, 510
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	345, 497, 500
FokI	GGATG	2 cut(s)	48, 97
Fsp4HI	GCNGC	3 cut(s)	345, 497, 500
GluI	GCNGC	3 cut(s)	345, 497, 500
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	3 cut(s)	137, 358, 438
Hin1II	CATG	2 cut(s)	458, 514
HincII	GTYRAC	2 cut(s)	202, 402
HindII	GTYRAC	2 cut(s)	202, 402
HinfI	GANTC	2 cut(s)	101, 155
HpaI	GTTAAC	1 cut(s)	202
HpaII	CCGG	3 cut(s)	137, 358, 438
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	2 cut(s)	202, 402
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	1 cut(s)	159
Hpy8I	GTNNAC	2 cut(s)	202, 402
HpyAV	CCTTC	3 cut(s)	230, 289, 513
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	6 cut(s)	7, 130, 167, 297, 313, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
Hsp92II	CATG	2 cut(s)	458, 514
Ksp22I	TGATCA	1 cut(s)	472
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	1 cut(s)	393
LpnPI	CCDG	9 cut(s)	80, 150, 153, 267, 371, 382, 390, 399, 451
Lsp1109I	GCAGC	3 cut(s)	331, 508, 511
MaeIII	GTNAC	3 cut(s)	119, 274, 324
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	1 cut(s)	125
MluCI	AATT	3 cut(s)	148, 431, 443
MlyI	GAGTC	1 cut(s)	149
Mph1103I	ATGCAT	1 cut(s)	299
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	386
MspI	CCGG	3 cut(s)	137, 358, 438
MspR9I	CCNGG	2 cut(s)	358, 439
Mva1269I	GAATGC	2 cut(s)	299, 346
MwoI	GCNNNNNNNGC	1 cut(s)	13
NciI	CCSGG	2 cut(s)	358, 439
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	458, 514
NsiI	ATGCAT	1 cut(s)	299
NspI	RCATGY	1 cut(s)	514
OliI	CACNNNNGTG	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PctI	GAATGC	2 cut(s)	299, 346
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	346, 498, 501
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	481
PstI	CTGCAG	1 cut(s)	498
RseI	CAYNNNNRTG	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	3 cut(s)	345, 497, 500
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	358, 439
SetI	ASST	5 cut(s)	229, 281, 333, 401, 470
SfcI	CTRYAG	1 cut(s)	494
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
Sse9I	AATT	3 cut(s)	148, 431, 443
StyD4I	CCNGG	2 cut(s)	356, 437
TaaI	ACNGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	44, 232
TasI	AATT	3 cut(s)	148, 431, 443
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	69, 84
TseI	GCWGC	3 cut(s)	344, 496, 499
TspDTI	ATGAA	3 cut(s)	277, 380, 443
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	2 cut(s)	69, 84
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.