Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009946

Physical Location & Seq

Genomic Coordinates Forward (+)

26973532 .. 26977308

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g36940.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTTCTCAGGCAGCCAATTCGACGCCTCCTCCGCCTTCGGCGGCGGCGGGTTCATGTCTTCTCAGGCCACTCAATTCGGCGGCGATTCCAATTCCTCCTCGGCTAGGAGTCGTGAAAGTCACGGACTGGTTCCGGTGACGGTGAAGCAGATTAGCGAAGCTCATCAGTCCGGAGATGAGAAATCAAACTTTGTGATCGGCGGCGTTGATGTGGCCAATGTGTCTTTGCTTGGGATGGTGTTTGAGAAAGTTGAGAAGACCACTGATGTTTCTTTTACCATCGATGACGGAACAGGGCGAATCAAATGCCGAAGATGGGTCAACGAGGCTTTCGACTCAACAGAAATGGAGGCAGTAGAGGATGGAATGTATGTTCGTGTCAATGGAAATTTGAAAGTTTTTCAAGGTGTTCGGCAGATAGGTGCATTCTCTGTGAGGCCTGTGAAGAACTTTGATGAAGTTGCCTTCCATTACATTGAGTGCATATATAACCACTTACGGTTACAGAAGCTGCAAGGAATTGCTGTAAATCAACCTCAGCCCATGGGATCATCTGTGTACACTCCTGTAAAGAGTGAGCCAAGTGGATATCAGACCGCCTCATCAAACCAAAGTGTTCATGAATTAATCATCGAATATATGAGGCTGCAGCCTTCCAGCACAAATGGAACAAGCACACAAGAGCTTTCCCAGCGCCTAAATCTCCCCATGGAAAAGATCATGGACGCTATCAGGCCTCTTGAAGCAGACGGCGAACTATATTCCACAATTGATGAATTTCACTATAAGATAGCTGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0018130 GO:0019222 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

268

Amino Acids

29.39

Weight (kDa)

5.05

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	74 - 147	3.5e-07	OB-fold nucleic acid binding domain
RPA_C	PF08784	165 - 269	2.3e-12	Replication protein A C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24490 AT2G24490
fragaria_vesca	FvH4_2g36940 FvH4_2g36940 FvH4_2g36940
malus_domestica	MD08G1131500.v1.1 MD08G1131600.v1.1 MD15G1109200.v1.1
prunus_persica	Prupe.1G461400_v2.0.a1
pyrus_communis	pycom08g11020
rosa_chinensis	RchiOBHm_Chr6g0304821
rosa_laevigata	RLG00000010946
rosa_multiflora	Rmu_ssc0000426.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163440
rosa_rugosa	Rorug06G0335100 Rorug06G0335200
rosa_samantha	Rh6AG446800 Rh6BG454800 Rh6CG460300 Rh6DG447200
rosa_wichuraiana	Rw6G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	170
AciI	CCGC	7 cut(s)	33, 42, 45, 48, 81, 201, 597
AclWI	GGATC	1 cut(s)	556
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	388, 776
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	560
AfiI	CCNNNNNNNGG	2 cut(s)	105, 316
AgsI	TTSAA	3 cut(s)	394, 404, 743
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
AluBI	AGCT	4 cut(s)	161, 511, 685, 794
AluI	AGCT	4 cut(s)	161, 511, 685, 794
AlwI	GGATC	1 cut(s)	556
AlwNI	CAGNNNCTG	1 cut(s)	511
Aor13HI	TCCGGA	1 cut(s)	170
AoxI	GGCC	4 cut(s)	66, 213, 437, 734
ApeKI	GCWGC	4 cut(s)	12, 511, 646, 649
ApoI	RAATTY	2 cut(s)	388, 776
AseI	ATTAAT	1 cut(s)	626
AspLEI	GCGC	1 cut(s)	696
AsuHPI	GGTGA	2 cut(s)	148, 154
BalI	TGGCCA	1 cut(s)	215
BbsI	GAAGAC	2 cut(s)	51, 263
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	4 cut(s)	24, 498, 633, 661
BccI	CCATC	4 cut(s)	229, 287, 309, 356
BceAI	ACGGC	1 cut(s)	766
BcgI	CGANNNNNNTGC	3 cut(s)	35, 288, 322
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	647
BfoI	RGCGCY	1 cut(s)	697
BisI	GCNGC	8 cut(s)	13, 43, 46, 82, 202, 512, 647, 650
BlsI	GCNGC	8 cut(s)	14, 44, 47, 83, 203, 513, 648, 651
BmiI	GGNNCC	1 cut(s)	132
BpiI	GAAGAC	2 cut(s)	51, 263
Bpu10I	CCTNAGC	1 cut(s)	537
Bsa29I	ATCGAT	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	99, 543, 708
BsaWI	WCCGGW	2 cut(s)	133, 170
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 316
Bse1I	ACTGG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	170
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	3 cut(s)	99, 543, 708
BseGI	GGATG	2 cut(s)	240, 367
BseLI	CCNNNNNNNGG	2 cut(s)	105, 316
BseMII	CTCAG	3 cut(s)	21, 77, 551
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	2 cut(s)	19, 88
BseXI	GCAGC	4 cut(s)	24, 498, 633, 661
BseYI	CCCAGC	1 cut(s)	690
BshFI	GGCC	4 cut(s)	68, 215, 439, 736
BshVI	ATCGAT	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	134, 171
BslI	CCNNNNNNNGG	2 cut(s)	105, 316
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	4 cut(s)	68, 215, 439, 736
Bsp13I	TCCGGA	1 cut(s)	170
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	3 cut(s)	195, 548, 717
Bsp19I	CCATGG	2 cut(s)	543, 708
BspACI	CCGC	7 cut(s)	33, 42, 45, 48, 81, 201, 597
BspANI	GGCC	4 cut(s)	68, 215, 439, 736
BspCNI	CTCAG	3 cut(s)	20, 76, 550
BspDI	ATCGAT	1 cut(s)	282
BspEI	TCCGGA	1 cut(s)	170
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	651
BspPI	GGATC	1 cut(s)	556
BsrGI	TGTACA	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	3 cut(s)	99, 543, 708
BssMI	GATC	3 cut(s)	195, 548, 717
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	2 cut(s)	543, 708
Bst4CI	ACNGT	2 cut(s)	142, 501
BstACI	GRCGYC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	558
BstDEI	CTNAG	3 cut(s)	7, 63, 537
BstDSI	CCRYGG	2 cut(s)	543, 708
BstENI	CCTNNNNNAGG	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	240, 367
BstH2I	RGCGCY	1 cut(s)	697
BstHHI	GCGC	1 cut(s)	696
BstKTI	GATC	3 cut(s)	198, 551, 720
BstMBI	GATC	3 cut(s)	195, 548, 717
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 691
BstSFI	CTRYAG	1 cut(s)	647
BstV1I	GCAGC	4 cut(s)	24, 498, 633, 661
BstV2I	GAAGAC	2 cut(s)	51, 263
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	4 cut(s)	68, 215, 439, 736
BsuTUI	ATCGAT	1 cut(s)	282
BtgI	CCRYGG	2 cut(s)	543, 708
BtsCI	GGATG	2 cut(s)	240, 367
BtsIMutI	CAGTG	1 cut(s)	261
CaiI	CAGNNNCTG	1 cut(s)	511
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	1 cut(s)	696
ClaI	ATCGAT	1 cut(s)	282
CseI	GACGC	2 cut(s)	32, 734
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	5 cut(s)	55, 544, 620, 709, 721
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	3 cut(s)	7, 63, 537
DpnI	GATC	3 cut(s)	197, 550, 719
DpnII	GATC	3 cut(s)	195, 548, 717
EaeI	YGGCCR	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	543, 708
Eco147I	AGGCCT	2 cut(s)	439, 736
Eco32I	GATATC	1 cut(s)	590
EcoNI	CCTNNNNNAGG	1 cut(s)	103
EcoRV	GATATC	1 cut(s)	590
EcoT14I	CCWWGG	2 cut(s)	543, 708
ErhI	CCWWGG	2 cut(s)	543, 708
FaeI	CATG	5 cut(s)	58, 547, 623, 712, 724
FatI	CATG	5 cut(s)	54, 543, 619, 708, 720
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	8 cut(s)	13, 43, 46, 82, 202, 512, 647, 650
FokI	GGATG	2 cut(s)	247, 374
Fsp4HI	GCNGC	8 cut(s)	13, 43, 46, 82, 202, 512, 647, 650
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	695
GluI	GCNGC	8 cut(s)	13, 43, 46, 82, 202, 512, 647, 650
GsaI	CCCAGC	1 cut(s)	694
HaeII	RGCGCY	1 cut(s)	697
HaeIII	GGCC	4 cut(s)	68, 215, 439, 736
HapII	CCGG	2 cut(s)	134, 171
HgaI	GACGC	2 cut(s)	32, 734
HhaI	GCGC	1 cut(s)	696
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	5 cut(s)	58, 547, 623, 712, 724
Hin6I	GCGC	1 cut(s)	694
HinP1I	GCGC	1 cut(s)	694
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	4 cut(s)	86, 109, 300, 335
HpaII	CCGG	2 cut(s)	134, 171
HphI	GGTGA	2 cut(s)	148, 154
Hpy166II	GTNNAC	3 cut(s)	322, 559, 561
Hpy188I	TCNGA	1 cut(s)	594
Hpy188III	TCNNGA	4 cut(s)	113, 171, 620, 740
Hpy8I	GTNNAC	3 cut(s)	322, 559, 561
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	46, 475, 663
HpyCH4III	ACNGT	2 cut(s)	142, 501
HpyCH4V	TGCA	4 cut(s)	425, 483, 514, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 691
HpyF3I	CTNAG	3 cut(s)	7, 63, 537
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	5 cut(s)	58, 547, 623, 712, 724
HspAI	GCGC	1 cut(s)	694
Kpn2I	TCCGGA	1 cut(s)	170
Kzo9I	GATC	3 cut(s)	195, 548, 717
Lsp1109I	GCAGC	4 cut(s)	24, 498, 633, 661
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	3 cut(s)	119, 136, 501
MalI	GATC	3 cut(s)	197, 550, 719
MboI	GATC	3 cut(s)	195, 548, 717
MboII	GAAGA	4 cut(s)	51, 268, 324, 457
MfeI	CAATTG	1 cut(s)	768
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	8 cut(s)	17, 74, 91, 388, 519, 623, 768, 776
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	2 cut(s)	118, 329
Mox20I	TGGCCA	1 cut(s)	215
MroI	TCCGGA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	1 cut(s)	626
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	2 cut(s)	134, 171
MunI	CAATTG	1 cut(s)	768
Mva1269I	GAATGC	1 cut(s)	425
MwoI	GCNNNNNNNGC	2 cut(s)	32, 691
NcoI	CCATGG	2 cut(s)	543, 708
NdeII	GATC	3 cut(s)	195, 548, 717
NlaIII	CATG	5 cut(s)	58, 547, 623, 712, 724
NlaIV	GGNNCC	1 cut(s)	132
NmeAIII	GCCGAG	1 cut(s)	80
NmuCI	GTSAC	2 cut(s)	119, 136
PagI	TCATGA	1 cut(s)	619
PceI	AGGCCT	2 cut(s)	439, 736
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	86, 300
PkrI	GCNGC	8 cut(s)	14, 44, 47, 83, 203, 513, 648, 651
PleI	GAGTC	2 cut(s)	117, 329
PpsI	GAGTC	2 cut(s)	117, 329
PshBI	ATTAAT	1 cut(s)	626
PspFI	CCCAGC	1 cut(s)	690
PspN4I	GGNNCC	1 cut(s)	132
PstI	CTGCAG	1 cut(s)	651
PstNI	CAGNNNCTG	1 cut(s)	511
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	8 cut(s)	13, 43, 46, 82, 202, 512, 647, 650
Sau3AI	GATC	3 cut(s)	195, 548, 717
SchI	GAGTC	2 cut(s)	118, 329
SetI	ASST	7 cut(s)	163, 409, 424, 513, 538, 687, 796
SfcI	CTRYAG	1 cut(s)	647
Sse9I	AATT	8 cut(s)	17, 74, 91, 388, 519, 623, 768, 776
SseBI	AGGCCT	2 cut(s)	439, 736
SsiI	CCGC	7 cut(s)	33, 42, 45, 48, 81, 201, 597
SspMI	CTAG	1 cut(s)	105
StuI	AGGCCT	2 cut(s)	439, 736
StyI	CCWWGG	2 cut(s)	543, 708
TaaI	ACNGT	2 cut(s)	142, 501
TaqI	TCGA	4 cut(s)	21, 282, 333, 633
TasI	AATT	8 cut(s)	17, 74, 91, 388, 519, 623, 768, 776
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	4 cut(s)	45, 48, 84, 204
TfiI	GAWTC	2 cut(s)	86, 300
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	2 cut(s)	119, 136
TseI	GCWGC	4 cut(s)	12, 511, 646, 649
Tsp45I	GTSAC	2 cut(s)	119, 136
TspDTI	ATGAA	5 cut(s)	43, 471, 608, 636, 789
TspGWI	ACGGA	2 cut(s)	138, 303
TspRI	CASTG	1 cut(s)	268
VspI	ATTAAT	1 cut(s)	626
XagI	CCTNNNNNAGG	1 cut(s)	103
XapI	RAATTY	2 cut(s)	388, 776
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.