Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009946

Physical Location & Seq

Genomic Coordinates Forward (+)

48749385 .. 48752134

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0335200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGAGGGTTGCAGCTCTCCTTGAACCAAACCCAGAAGGTTCGCCTTCAGAGAGCTCTGGAAAAGCTCGAGTCTCTTTCCTCAAAACCCAATTCCAATGCTACTGTTATCGTCGCCGATTCCATCCCCGTTAACCACGAAGACGGACTTCTCAAGGGACATGGGACCTCTGAAGTTAGCGGTGAAGTTGTTGCGACGGTTTGCGGCGTCGTGGAGAGGGTTAATAAGCTGGTCTATGTGCGTTCTTTAAGAGCTAGGTACAAACCAGAGGTTGGAGATATCATAGTAGGGCGTGTTATCGAGGTTGCTCCGAAACGTTGGAGAGTGGAGATAAACTATAGCCATGATGCAGTGTTGATGCTTTCTTCAATGAACTTACCCGATGGCATCCAGAGGCGTCGAACTGCTCTGGATGAGCTGAATATGCGCACTATTTTTGAAGAGAACGATGTCATTTGTGCTGAAGTTCGTGGTTTTCAACATGATGGTTTACATCTCCAAGCAAGAAGTCAGAAGTATGGGAAGCTTGGAAGGGGTCAAATGCTCACAGTCCCTCCTTATCTAGTGAAAAGACGCAAACAACACTTCCATAATTTGGAAAAGTATGGAATTGACCTTATTCTTGGCTGCAATGGATTCATTTGGGTTGGTGAGCATGTTGAAGTTACAGACGATATGGTAGTGGATCAAGTGAACAATTCTGCACAACAGAGTGCCAAAGCTGATAAAAAAATTCTAAGCCCTGAAGAGCAAGAAAGAAGCTACACTCCCCAAGAGACTAGAGAGAACATCTGCAGGACTGCAAATGCTATTCGCGTATTGTCTACTTTAGGCTTCAATATTACGGTTGAAGTGATCATGGATACGGTTGAGTTGAGCATTTCTCTTAAACAACAGGTTCCCATACATGAAATGCTTGGGGCAGAGTTCTTTGTTCTTGTTGCAGAAAAGGAGGCCGCAAGGAGAAGCTTGACTAAAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005662 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006281 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0018130 GO:0019222 GO:0019438 GO:0022402 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035861 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090734 GO:1901360 GO:1901362 GO:1901576 GO:1902295 GO:1902318 GO:1902969 GO:1902981 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

RPA_C tRNA_anti-codon

Protein Analysis

328

Amino Acids

36.98

Weight (kDa)

8.78

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S1_RRP4	PF21266	86 - 157	1.1e-34	RRP4, S1 domain
KH_6	PF15985	179 - 220	2.3e-13	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24490 AT2G24490
fragaria_vesca	FvH4_2g36940 FvH4_2g36940 FvH4_2g36940
malus_domestica	MD08G1131500.v1.1 MD08G1131600.v1.1 MD15G1109200.v1.1
prunus_persica	Prupe.1G461400_v2.0.a1
pyrus_communis	pycom08g11020
rosa_chinensis	RchiOBHm_Chr6g0304821
rosa_laevigata	RLG00000010946
rosa_multiflora	Rmu_ssc0000426.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163440
rosa_rugosa	Rorug06G0335100 Rorug06G0335200
rosa_samantha	Rh6AG446800 Rh6BG454800 Rh6CG460300 Rh6DG447200
rosa_wichuraiana	Rw6G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	428
AccB7I	CCANNNNNTGG	2 cut(s)	272, 595
AccI	GTMKAC	1 cut(s)	824
AccII	CGCG	1 cut(s)	816
AciI	CCGC	3 cut(s)	180, 204, 957
AclI	AACGTT	1 cut(s)	316
AclWI	GGATC	1 cut(s)	693
AcsI	RAATTY	1 cut(s)	732
AcuI	CTGAAG	4 cut(s)	32, 192, 483, 765
AcyI	GRCGYC	2 cut(s)	207, 397
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	2 cut(s)	272, 595
AgsI	TTSAA	7 cut(s)	25, 369, 440, 479, 662, 838, 851
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	2 cut(s)	78, 770
AlwI	GGATC	1 cut(s)	693
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	954
ApeKI	GCWGC	2 cut(s)	13, 627
ApoI	RAATTY	1 cut(s)	732
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	194, 662
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	25, 614
BccI	CCATC	3 cut(s)	131, 377, 479
BciVI	GTATCC	1 cut(s)	856
BclI	TGATCA	1 cut(s)	855
BcoDI	GTCTC	2 cut(s)	78, 770
BfaI	CTAG	3 cut(s)	255, 563, 780
BfmI	CTRYAG	2 cut(s)	337, 793
BfuI	GTATCC	1 cut(s)	856
BisI	GCNGC	4 cut(s)	14, 205, 628, 957
BlsI	GCNGC	4 cut(s)	15, 206, 629, 958
Bme18I	GGWCC	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	2 cut(s)	166, 900
BmsI	GCATC	3 cut(s)	337, 348, 396
BpiI	GAAGAC	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	868, 900
BpuEI	CTTGAG	1 cut(s)	137
BsaHI	GRCGYC	2 cut(s)	207, 397
BsaXI	ACNNNNNCTCC	2 cut(s)	538, 568
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 595
Bse3DI	GCAATG	1 cut(s)	637
BseGI	GGATG	3 cut(s)	123, 387, 418
BseLI	CCNNNNNNNGG	2 cut(s)	272, 595
BseMI	GCAATG	1 cut(s)	637
BseXI	GCAGC	2 cut(s)	25, 614
BsgI	GTGCAG	1 cut(s)	687
Bsh1236I	CGCG	1 cut(s)	816
BshFI	GGCC	1 cut(s)	956
BsiHKAI	GWGCWC	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	68
BslFI	GGGAC	3 cut(s)	171, 178, 536
BslI	CCNNNNNNNGG	2 cut(s)	272, 595
BsmAI	GTCTC	2 cut(s)	78, 770
BsmFI	GGGAC	3 cut(s)	171, 178, 536
BsnI	GGCC	1 cut(s)	956
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	685, 855
BspACI	CCGC	3 cut(s)	180, 204, 957
BspANI	GGCC	1 cut(s)	956
BspFNI	CGCG	1 cut(s)	816
BspLI	GGNNCC	2 cut(s)	166, 900
BspMAI	CTGCAG	1 cut(s)	797
BspPI	GGATC	1 cut(s)	693
BspQI	GCTCTTC	1 cut(s)	741
BsrDI	GCAATG	1 cut(s)	637
BssMI	GATC	2 cut(s)	685, 855
BssNI	GRCGYC	2 cut(s)	207, 397
Bst4CI	ACNGT	5 cut(s)	106, 199, 550, 847, 868
Bst6I	CTCTTC	2 cut(s)	435, 741
BstACI	GRCGYC	2 cut(s)	207, 397
BstDEI	CTNAG	1 cut(s)	737
BstF5I	GGATG	3 cut(s)	123, 387, 418
BstFNI	CGCG	1 cut(s)	816
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	2 cut(s)	688, 858
BstMAI	GTCTC	2 cut(s)	78, 770
BstMBI	GATC	2 cut(s)	685, 855
BstMWI	GCNNNNNNNGC	1 cut(s)	424
BstNSI	RCATGY	1 cut(s)	659
BstSFI	CTRYAG	2 cut(s)	337, 793
BstUI	CGCG	1 cut(s)	816
BstV1I	GCAGC	2 cut(s)	25, 614
BstV2I	GAAGAC	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	1 cut(s)	956
BtsCI	GGATG	3 cut(s)	123, 387, 418
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	357
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	165
CseI	GACGC	3 cut(s)	196, 386, 582
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	6 cut(s)	161, 344, 482, 656, 859, 908
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	1 cut(s)	737
DpnI	GATC	2 cut(s)	687, 857
DpnII	GATC	2 cut(s)	685, 855
Eam1104I	CTCTTC	2 cut(s)	435, 741
EarI	CTCTTC	2 cut(s)	435, 741
Ecl136II	GAGCTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	58
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	56
Eco57I	CTGAAG	4 cut(s)	32, 192, 483, 765
Eco88I	CYCGRG	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	58
FaeI	CATG	6 cut(s)	164, 347, 485, 659, 862, 911
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	3 cut(s)	171, 178, 536
FatI	CATG	6 cut(s)	160, 343, 481, 655, 858, 907
FbaI	TGATCA	1 cut(s)	855
FblI	GTMKAC	1 cut(s)	824
Fnu4HI	GCNGC	4 cut(s)	14, 205, 628, 957
FokI	GGATG	3 cut(s)	110, 374, 425
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	4 cut(s)	14, 205, 628, 957
FspAI	RTGCGCAY	1 cut(s)	428
FspBI	CTAG	3 cut(s)	255, 563, 780
FspI	TGCGCA	1 cut(s)	428
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	4 cut(s)	14, 205, 628, 957
HaeIII	GGCC	1 cut(s)	956
HgaI	GACGC	3 cut(s)	196, 386, 582
HhaI	GCGC	1 cut(s)	429
Hin1I	GRCGYC	2 cut(s)	207, 397
Hin1II	CATG	6 cut(s)	164, 347, 485, 659, 862, 911
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	2 cut(s)	524, 967
HinfI	GANTC	3 cut(s)	71, 119, 636
HpaI	GTTAAC	1 cut(s)	133
HphI	GGTGA	2 cut(s)	194, 662
Hpy166II	GTNNAC	4 cut(s)	133, 491, 694, 825
Hpy188I	TCNGA	4 cut(s)	51, 172, 312, 513
Hpy188III	TCNNGA	3 cut(s)	59, 391, 410
Hpy8I	GTNNAC	4 cut(s)	133, 491, 694, 825
Hpy99I	CGWCG	4 cut(s)	116, 199, 212, 402
HpyAV	CCTTC	3 cut(s)	31, 56, 525
HpyCH4III	ACNGT	5 cut(s)	106, 199, 550, 847, 868
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	7 cut(s)	13, 350, 630, 704, 795, 803, 944
HpyF10VI	GCNNNNNNNGC	1 cut(s)	424
HpyF3I	CTNAG	1 cut(s)	737
HpySE526I	ACGT	1 cut(s)	316
Hsp92I	GRCGYC	2 cut(s)	207, 397
Hsp92II	CATG	6 cut(s)	164, 347, 485, 659, 862, 911
HspAI	GCGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	855
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	685, 855
LguI	GCTCTTC	1 cut(s)	741
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	9 cut(s)	44, 47, 215, 279, 395, 404, 756, 781, 881
Lsp1109I	GCAGC	2 cut(s)	25, 614
LweI	GCATC	3 cut(s)	337, 348, 396
MaeI	CTAG	3 cut(s)	255, 563, 780
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	2 cut(s)	687, 857
MboI	GATC	2 cut(s)	685, 855
MboII	GAAGA	4 cut(s)	152, 357, 452, 758
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	5 cut(s)	91, 592, 609, 697, 732
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	2 cut(s)	253, 299
MnlI	CCTC	8 cut(s)	91, 178, 210, 262, 295, 387, 564, 946
MseI	TTAA	4 cut(s)	132, 222, 248, 888
MvnI	CGCG	1 cut(s)	816
MwoI	GCNNNNNNNGC	1 cut(s)	424
NdeII	GATC	2 cut(s)	685, 855
NlaIII	CATG	6 cut(s)	164, 347, 485, 659, 862, 911
NlaIV	GGNNCC	2 cut(s)	166, 900
NsbI	TGCGCA	1 cut(s)	428
NspI	RCATGY	1 cut(s)	659
PaeR7I	CTCGAG	1 cut(s)	68
PciSI	GCTCTTC	1 cut(s)	741
PfeI	GAWTC	2 cut(s)	119, 636
PflMI	CCANNNNNTGG	2 cut(s)	272, 595
PkrI	GCNGC	4 cut(s)	15, 206, 629, 958
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PpuMI	RGGWCCY	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	58
Psp1406I	AACGTT	1 cut(s)	316
Psp5II	RGGWCCY	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	166, 900
PspPI	GGNCC	1 cut(s)	165
PspPPI	RGGWCCY	1 cut(s)	165
PspXI	VCTCGAGB	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	797
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SacI	GAGCTC	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	741
SaqAI	TTAA	4 cut(s)	132, 222, 248, 888
SatI	GCNGC	4 cut(s)	14, 205, 628, 957
Sau3AI	GATC	2 cut(s)	685, 855
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	58
SfaNI	GCATC	3 cut(s)	337, 348, 396
SfcI	CTRYAG	2 cut(s)	337, 793
Sfr274I	CTCGAG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	165
SlaI	CTCGAG	1 cut(s)	68
SmlI	CTYRAG	2 cut(s)	68, 152
SmoI	CTYRAG	2 cut(s)	68, 152
Sse9I	AATT	5 cut(s)	91, 592, 609, 697, 732
SsiI	CCGC	3 cut(s)	180, 204, 957
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	3 cut(s)	255, 563, 780
SstI	GAGCTC	1 cut(s)	58
TaaI	ACNGT	5 cut(s)	106, 199, 550, 847, 868
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	3 cut(s)	69, 300, 400
TasI	AATT	5 cut(s)	91, 592, 609, 697, 732
TauI	GCSGC	2 cut(s)	207, 959
TfiI	GAWTC	2 cut(s)	119, 636
Tru1I	TTAA	4 cut(s)	132, 222, 248, 888
Tru9I	TTAA	4 cut(s)	132, 222, 248, 888
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	2 cut(s)	13, 627
TspDTI	ATGAA	3 cut(s)	386, 628, 924
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	357
Van91I	CCANNNNNTGG	2 cut(s)	272, 595
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	1 cut(s)	732
XceI	RCATGY	1 cut(s)	659
XhoI	CTCGAG	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	824
XspI	CTAG	3 cut(s)	255, 563, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.