pycom08g11020

Replication protein A 32 kDa subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
9295001 .. 9296201
1201 bp
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UTR
Exon/CDS
Intron
pycom08g11020.4

Sequence Viewer

Length: 318 bp
ATGCAGGAAATCGAAGATGGAATGTATGTTCGTGTTAATGGACACTTGAAAGTCTTTCAAGGTGTTCGACAGATTGTTGCCTTTTCTGTGAGGCCTGTGAAAAACTTTGACGAAGTTACCTTCCACTTCATTGAATGCATACATACCCACTTGCAGATGTCCAAGTTACATTACTATTTTGAATTGATGAACGAATTACTTTGGAATACTGCCACTCAAACCCAGCCTATGAACTCATCTTTGAACACTCCTGTGGAGAGCAGGTCAACTGGATATCAGACAGCCCCGTCAAACCAATTATTTCTCCGGGCAAGTTAG

Protein Analysis

106

Amino Acids

12.22

Weight (kDa)

6.49

Isoelectric Point (pI)

58.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009946)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 252
AgsI TTSAA 5 cut(s) 49, 59, 134, 182, 244
AleI CACNNNNGTG 1 cut(s) 251
AloI GAACNNNNNNTCC 2 cut(s) 12, 44
AoxI GGCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 308
BccI CCATC 1 cut(s) 11
BcnI CCSGG 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 252
Bme1390I CCNGG 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 308
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bse1I ACTGG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 222
BshFI GGCC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 307
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 1 cut(s) 94
BspANI GGCC 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 252
BsrI ACTGG 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 306
BsuRI GGCC 1 cut(s) 94
BveI ACCTGC 1 cut(s) 252
CviJI RGCY 3 cut(s) 94, 226, 284
CviKI_1 RGCY 3 cut(s) 94, 226, 284
DrdI GACNNNNNNGTC 1 cut(s) 286
DseDI GACNNNNNNGTC 1 cut(s) 286
Eco147I AGGCCT 1 cut(s) 94
Eco32I GATATC 1 cut(s) 275
EcoRV GATATC 1 cut(s) 275
EcoT22I ATGCAT 1 cut(s) 140
FaiI YATR 4 cut(s) 27, 140, 144, 230
GsaI CCCAGC 1 cut(s) 226
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 307
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HpaII CCGG 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 1 cut(s) 279
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 1 cut(s) 130
HpyCH4V TGCA 3 cut(s) 4, 138, 154
LpnPI CCDG 5 cut(s) 108, 236, 247, 255, 264
MaeIII GTNAC 2 cut(s) 115, 165
MboII GAAGA 1 cut(s) 26
MluCI AATT 3 cut(s) 182, 194, 296
MnlI CCTC 1 cut(s) 84
Mph1103I ATGCAT 1 cut(s) 140
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 251
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 1 cut(s) 308
Mva1269I GAATGC 1 cut(s) 140
NciI CCSGG 1 cut(s) 308
NsiI ATGCAT 1 cut(s) 140
OliI CACNNNNGTG 1 cut(s) 251
PceI AGGCCT 1 cut(s) 94
PctI GAATGC 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 222
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 308
SetI ASST 3 cut(s) 64, 122, 266
SmiMI CAYNNNNRTG 1 cut(s) 251
Sse9I AATT 3 cut(s) 182, 194, 296
SseBI AGGCCT 1 cut(s) 94
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 306
TaqI TCGA 2 cut(s) 12, 67
TasI AATT 3 cut(s) 182, 194, 296
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TspDTI ATGAA 3 cut(s) 118, 203, 245
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.