Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006606

Physical Location & Seq

Genomic Coordinates Forward (+)

10801091 .. 10803722

Gene Structure 2632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25355.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGGTACTGAAGTTTCTACCTCGCCGACAAGCCTCATTGATCAGACTGTTGTTCCAGGTGATGTTGTTCTCGATTTATCAAACATGACTAACCAAACAATCAAACTCGGCAGTGGTCTCCGTCAGGATAATGAGGTGATATCTGTTATGAGAGCTGGGAAGTTGAGGTACTCTAAGCCAAATAAGTATTGGGTGGAAAGTTCTCATAAAAGGTATGTACCTCGTCCTGAGGATCATGTTCTTGGCATTGTGGTAGATTGTAAAGGAGAAAACTATTGGATAGACATTAAAGGACCACAATTGGCTCTTTTGCCTGTGCTTGCATTTGAAGGAGCAAACAGAAGAAATTATCCCAAGTTTGAGGTAAGCACTCTGCTTTATACTCGGGTTGTGAAGACAAACACAGGAATGAACCCGGAGCTGTCATGTGTAGACGAAAGTGGAAAGGCTGCAGGATTTGGTCCCTTAAAAGATGGTTTCATGTTTGAAACTTCAACTGGTTTATCTAGAATGTTGTTGAGTTCACCAACTTGCCCGGTCCTTGAAGCTCTTGGAAAGAAACTCTCGTTTGAGACTGCGTTTGGCTTAAATGGGAGATGTTGGGTGCATGCGGCTGCTCCTCGTATAGTGATTATCGTCGCCAATGCGTTGATGAATTCTGAAACTTTAAGCGGGACACAACAGAGAATCATGGTAGAGAAATTGCTGGAGAAAATTTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

KH_6

Protein Analysis

241

Amino Acids

26.48

Weight (kDa)

8.29

Isoelectric Point (pI)

25.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rrp40_N	PF18311	6 - 43	2.6e-08	Exosome complex exonuclease Rrp40 N-terminal domain
RRP40_S1	PF21262	44 - 126	5.3e-27	Exosome complex component RRP40, S1 domain
KH_6	PF15985	131 - 179	2.8e-13	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25355 AT2G25355 AT4G32175
fragaria_vesca	FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270
malus_domestica	MD06G1174300.v1.1 MD06G1174500.v1.1
prunus_persica	Prupe.5G174300_v2.0.a1
pyrus_communis	pycom06g15560
rosa_chinensis	RchiOBHm_Chr7g0193601
rosa_laevigata	RLG00000004257
rosa_multiflora	Rmu_co8153970.1_g000001 Rmu_ssc0000035.1_g000008
rosa_roxburghii	Rroxscaffold_3G00261970
rosa_rugosa	Rorug07G0010700 Rorug07G0010800 Rorug07G0010900 Rorug07G0010900
rosa_samantha	Rh7AG137500 Rh7BG137700 Rh7CG141300 Rh7DG138900
rosa_wichuraiana	Rw7G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	2 cut(s)	611, 672
AclWI	GGATC	1 cut(s)	240
AcsI	RAATTY	2 cut(s)	655, 714
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	3 cut(s)	7, 170, 219
AgsI	TTSAA	4 cut(s)	329, 488, 495, 545
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	3 cut(s)	155, 421, 548
AluI	AGCT	3 cut(s)	155, 421, 548
Alw26I	GTCTC	2 cut(s)	122, 566
AlwI	GGATC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	449, 614
ApoI	RAATTY	2 cut(s)	655, 714
AspS9I	GGNCC	3 cut(s)	293, 461, 538
AsuC2I	CCSGG	2 cut(s)	416, 536
AsuHPI	GGTGA	3 cut(s)	71, 148, 516
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	3 cut(s)	293, 461, 538
AxyI	CCTNAGG	1 cut(s)	228
BaeI	ACNNNNGTAYC	1 cut(s)	30
BarI	GAAGNNNNNNTAC	2 cut(s)	152, 184
BbsI	GAAGAC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	436, 601
BccI	CCATC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	2 cut(s)	416, 536
BcoDI	GTCTC	2 cut(s)	122, 566
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	1 cut(s)	450
BisI	GCNGC	3 cut(s)	450, 612, 615
BlsI	GCNGC	3 cut(s)	451, 613, 616
Bme1390I	CCNGG	3 cut(s)	57, 416, 536
Bme18I	GGWCC	3 cut(s)	293, 461, 538
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	3 cut(s)	293, 461, 538
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	3 cut(s)	57, 416, 536
BpiI	GAAGAC	1 cut(s)	401
BpuMI	CCSGG	2 cut(s)	416, 536
BsaI	GGTCTC	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	502
Bse21I	CCTNAGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	502
BseRI	GAGGAG	1 cut(s)	609
BseXI	GCAGC	2 cut(s)	436, 601
BseYI	CCCAGC	1 cut(s)	155
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	416, 536
BslFI	GGGAC	2 cut(s)	447, 688
BsmAI	GTCTC	2 cut(s)	122, 566
BsmFI	GGGAC	2 cut(s)	447, 688
Bso31I	GGTCTC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	40, 232
BspACI	CCGC	2 cut(s)	611, 672
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	463
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	502
BssMI	GATC	2 cut(s)	40, 232
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	321, 609
BstDEI	CTNAG	2 cut(s)	174, 228
BstKTI	GATC	2 cut(s)	43, 235
BstMAI	GTCTC	2 cut(s)	122, 566
BstMBI	GATC	2 cut(s)	40, 232
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	3 cut(s)	55, 414, 534
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	436, 601
BstV2I	GAAGAC	1 cut(s)	401
Bsu36I	CCTNAGG	1 cut(s)	228
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	2 cut(s)	321, 609
Cfr13I	GGNCC	3 cut(s)	293, 461, 538
Csp6I	GTAC	3 cut(s)	6, 169, 218
CviAII	CATG	6 cut(s)	85, 236, 426, 481, 608, 691
CviJI	RGCY	9 cut(s)	33, 155, 178, 305, 421, 449, 548, 585, 614
CviKI_1	RGCY	9 cut(s)	33, 155, 178, 305, 421, 449, 548, 585, 614
CviQI	GTAC	3 cut(s)	6, 169, 218
DdeI	CTNAG	2 cut(s)	174, 228
DpnI	GATC	2 cut(s)	42, 234
DpnII	GATC	2 cut(s)	40, 232
Eco31I	GGTCTC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	141
Eco47I	GGWCC	3 cut(s)	293, 461, 538
Eco57I	CTGAAG	1 cut(s)	30
Eco81I	CCTNAGG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	384
EcoRI	GAATTC	1 cut(s)	655
EcoRII	CCWGG	1 cut(s)	55
EcoRV	GATATC	1 cut(s)	141
FaeI	CATG	6 cut(s)	88, 239, 429, 484, 611, 694
FaqI	GGGAC	2 cut(s)	447, 688
FatI	CATG	6 cut(s)	84, 235, 425, 480, 607, 690
FauI	CCCGC	1 cut(s)	665
FbaI	TGATCA	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	3 cut(s)	450, 612, 615
Fsp4HI	GCNGC	3 cut(s)	450, 612, 615
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	3 cut(s)	450, 612, 615
GsaI	CCCAGC	1 cut(s)	159
HapII	CCGG	2 cut(s)	416, 536
Hin1II	CATG	6 cut(s)	88, 239, 429, 484, 611, 694
HinfI	GANTC	1 cut(s)	687
HpaII	CCGG	2 cut(s)	416, 536
HphI	GGTGA	3 cut(s)	71, 148, 516
Hpy166II	GTNNAC	2 cut(s)	433, 524
Hpy188I	TCNGA	3 cut(s)	45, 661, 721
Hpy188III	TCNNGA	4 cut(s)	71, 125, 227, 507
Hpy8I	GTNNAC	2 cut(s)	433, 524
Hpy99I	CGWCG	1 cut(s)	641
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	3 cut(s)	323, 452, 607
HpyF3I	CTNAG	2 cut(s)	174, 228
Hsp92II	CATG	6 cut(s)	88, 239, 429, 484, 611, 694
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	2 cut(s)	40, 232
LmnI	GCTCC	3 cut(s)	332, 418, 622
Lsp1109I	GCAGC	2 cut(s)	436, 601
MaeI	CTAG	1 cut(s)	507
MalI	GATC	2 cut(s)	42, 234
MboI	GATC	2 cut(s)	40, 232
MboII	GAAGA	2 cut(s)	354, 406
MfeI	CAATTG	1 cut(s)	299
MluCI	AATT	5 cut(s)	299, 346, 655, 701, 714
MnlI	CCTC	8 cut(s)	31, 44, 127, 159, 223, 231, 355, 630
MseI	TTAA	4 cut(s)	288, 467, 587, 668
MslI	CAYNNNNRTG	1 cut(s)	407
MspI	CCGG	2 cut(s)	416, 536
MspR9I	CCNGG	3 cut(s)	57, 416, 536
MunI	CAATTG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	57
NciI	CCSGG	2 cut(s)	416, 536
NdeII	GATC	2 cut(s)	40, 232
NlaIII	CATG	6 cut(s)	88, 239, 429, 484, 611, 694
NlaIV	GGNNCC	1 cut(s)	463
NmeAIII	GCCGAG	1 cut(s)	87
NspI	RCATGY	1 cut(s)	611
PaeI	GCATGC	1 cut(s)	611
PfeI	GAWTC	1 cut(s)	687
PkrI	GCNGC	3 cut(s)	451, 613, 616
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	463
PspPI	GGNCC	3 cut(s)	293, 461, 538
PstI	CTGCAG	1 cut(s)	454
RsaI	GTAC	3 cut(s)	7, 170, 219
RsaNI	GTAC	3 cut(s)	6, 169, 218
RseI	CAYNNNNRTG	1 cut(s)	407
SaqAI	TTAA	4 cut(s)	288, 467, 587, 668
SatI	GCNGC	3 cut(s)	450, 612, 615
Sau3AI	GATC	2 cut(s)	40, 232
Sau96I	GGNCC	3 cut(s)	293, 461, 538
ScrFI	CCNGG	3 cut(s)	57, 416, 536
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	3 cut(s)	293, 461, 538
SmiMI	CAYNNNNRTG	1 cut(s)	407
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	5 cut(s)	299, 346, 655, 701, 714
SsiI	CCGC	2 cut(s)	611, 672
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	3 cut(s)	55, 414, 534
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	72
TasI	AATT	5 cut(s)	299, 346, 655, 701, 714
TauI	GCSGC	1 cut(s)	614
TfiI	GAWTC	1 cut(s)	687
Tru1I	TTAA	4 cut(s)	288, 467, 587, 668
Tru9I	TTAA	4 cut(s)	288, 467, 587, 668
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	2 cut(s)	449, 614
TspDTI	ATGAA	3 cut(s)	425, 469, 668
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	3 cut(s)	293, 461, 538
XapI	RAATTY	2 cut(s)	655, 714
XbaI	TCTAGA	1 cut(s)	506
XceI	RCATGY	1 cut(s)	611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.