Rmu_co8153970.1_g000001

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8153970.1
OG0006606
Physical Location & Seq
Reverse (-)
1 .. 375
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8153970.1_g000001.1.cds

Sequence Viewer

Length: 204 bp
atggccgagatagcgccggcgaacttcgtagaccaatcagtcgttccgggagatgtggttcttgacctaacagaaatggcgaaccagaccatcaaactgggcgggggtctccggcaggactgcgatgcaatagctgcgatgaaggccggaacgttgaggttctcaaggcccaacaagtactgggtcgaaacgtcccagaaacgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
KH_6

Protein Analysis

68

Amino Acids

7.42

Weight (kDa)

6.1

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 30
AciI CCGC 1 cut(s) 102
AclI AACGTT 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 201
AjuI GAANNNNNNNTTGG 2 cut(s) 27, 59
AloI GAACNNNNNNTCC 2 cut(s) 42, 74
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 113
AoxI GGCC 3 cut(s) 3, 144, 167
ApeKI GCWGC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 168
AsuC2I CCSGG 1 cut(s) 48
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 113
BfoI RGCGCY 1 cut(s) 17
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 48
BmrI ACTGGG 2 cut(s) 107, 190
BmsI GCATC 1 cut(s) 115
BmuI ACTGGG 2 cut(s) 107, 190
BpuEI CTTGAG 1 cut(s) 148
BpuMI CCSGG 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 102, 185
BseLI CCNNNNNNNGG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 102, 185
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 3 cut(s) 5, 146, 169
BsiSI CCGG 4 cut(s) 17, 47, 112, 147
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 3 cut(s) 5, 146, 169
Bso31I GGTCTC 1 cut(s) 113
BspACI CCGC 1 cut(s) 102
BspANI GGCC 3 cut(s) 5, 146, 169
BspTNI GGTCTC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 2 cut(s) 102, 185
BssAI RCCGGY 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 18
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 113
BstMWI GCNNNNNNNGC 3 cut(s) 11, 134, 143
BstSCI CCNGG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 97
BsuRI GGCC 3 cut(s) 5, 146, 169
BtgZI GCGATG 2 cut(s) 138, 152
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 178
CviJI RGCY 4 cut(s) 5, 134, 146, 169
CviKI_1 RGCY 4 cut(s) 5, 134, 146, 169
CviQI GTAC 1 cut(s) 178
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 113
FaqI GGGAC 1 cut(s) 178
FauI CCCGC 1 cut(s) 95
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 135
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 3 cut(s) 5, 146, 169
HapII CCGG 4 cut(s) 17, 47, 112, 147
HhaI GCGC 1 cut(s) 16
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HpaII CCGG 4 cut(s) 17, 47, 112, 147
Hpy166II GTNNAC 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 136
HpyCH4IV ACGT 2 cut(s) 152, 191
HpyCH4V TGCA 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 134, 143
HpySE526I ACGT 2 cut(s) 152, 191
HspAI GCGC 1 cut(s) 14
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
LpnPI CCDG 8 cut(s) 30, 60, 83, 98, 101, 125, 160, 166
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 115
MaeII ACGT 2 cut(s) 152, 191
MnlI CCTC 1 cut(s) 150
MreI CGCCGGCG 1 cut(s) 16
MroNI GCCGGC 1 cut(s) 16
MspI CCGG 4 cut(s) 17, 47, 112, 147
MspR9I CCNGG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 11, 134, 143
NaeI GCCGGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 48
NgoMIV GCCGGC 1 cut(s) 16
NmeAIII GCCGAG 1 cut(s) 31
PdiI GCCGGC 1 cut(s) 18
PfoI TCCNGGA 1 cut(s) 46
PkrI GCNGC 1 cut(s) 136
Psp1406I AACGTT 1 cut(s) 152
PspPI GGNCC 1 cut(s) 168
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SatI GCNGC 1 cut(s) 135
Sau96I GGNCC 1 cut(s) 168
ScaI AGTACT 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 48
SetI ASST 5 cut(s) 69, 136, 155, 161, 194
SfaNI GCATC 1 cut(s) 115
SgrAI CRCCGGYG 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
SsiI CCGC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 46
TaiI ACGT 2 cut(s) 155, 194
TaqI TCGA 1 cut(s) 186
TatI WGTACW 1 cut(s) 177
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.