Rw7G011710

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006606
Physical Location & Seq
Reverse (-)
11011676 .. 11015991
4316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G011710.1

Sequence Viewer

Length: 726 bp
ATGGCCGAGATAGCGCCGGCGAACTTCGTAGACCAATCAGTCGTTCCGGGAGATGTGGTTCTTGACCTAACAGAAATGGCGAACCAGACCATCAAACTGGGCGGGGGTCTCCGGCAGGACTGCGATGCAATAGCTGCGATGAAGGCCGGAACGTTGAGGTTCTCAAGGCCCAACAAGTACTGGGTCGAAACGTCCCAGAAACGGTATGTGCCTTGTGTGGAGGATTCTGTTCTTGGAATCGTGGTGGACTCTAAAGCAGATAATTTTCTGGTGGACATTAAGGGGCCTTCGCTGGCGTTTTTGCCCGTGCTTGCTTTCGAAGGAGGAACCAGGAGAAACATACCAAAGTTTGAGGTAGGTACATTGCTTTATGTTCGGGTCGTGAAGGCAAACCCTGGTATGAACCCTGAGTTGTCATGCACTGATGCCAGTGGAAAAGCAGCAGAGTATGGTTCCCTTAAAGATGGCTACATGTTTGAATGCTCAACTGGCCTTTCAAGAATGCTGCTGAGTTCACCAACATGCCCAGTTCTTGCAGCACTTGGGAGGAACATCTCCTTTGAAATAGCAATTGGTTTAAATGGCCGTGTTTGGGTGAACGCTACTGAAGCAGATAAGGTGATCATAGTTGCTAATGCAATTATGAACTCGGAGTCCCTTAGTGGGGTACAGCAGATTGGTATGGTGGATAAACTTTTGAAGAAGATCAATGACTTAGCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
KH_6

Protein Analysis

241

Amino Acids

25.86

Weight (kDa)

5.66

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rrp40_N PF18311 31 - 68 2.6e-07 Exosome complex exonuclease Rrp40 N-terminal domain
RRP40_S1 PF21262 69 - 151 1.3e-27 Exosome complex component RRP40, S1 domain
KH_6 PF15985 156 - 204 6.8e-16 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 30
AciI CCGC 1 cut(s) 102
AclI AACGTT 1 cut(s) 152
AcoI YGGCCR 2 cut(s) 3, 583
AcuI CTGAAG 1 cut(s) 627
AfaI GTAC 3 cut(s) 179, 361, 669
AfiI CCNNNNNNNGG 4 cut(s) 201, 592, 663, 664
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 4 cut(s) 479, 498, 563, 700
AjnI CCWGG 2 cut(s) 329, 394
AjuI GAANNNNNNNTTGG 4 cut(s) 27, 59, 555, 587
AloI GAACNNNNNNTCC 4 cut(s) 42, 74, 638, 670
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 113
AoxI GGCC 6 cut(s) 3, 144, 167, 284, 490, 583
ApeKI GCWGC 4 cut(s) 134, 440, 505, 536
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 168, 284
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 3 cut(s) 507, 607, 631
AsuII TTCGAA 1 cut(s) 318
BbvI GCAGC 4 cut(s) 121, 452, 492, 548
BccI CCATC 2 cut(s) 98, 458
BceAI ACGGC 1 cut(s) 570
BciT130I CCWGG 2 cut(s) 331, 396
BclI TGATCA 1 cut(s) 621
BcnI CCSGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 113
BfoI RGCGCY 1 cut(s) 17
BisI GCNGC 4 cut(s) 135, 441, 506, 537
BlsI GCNGC 4 cut(s) 136, 442, 507, 538
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 3 cut(s) 48, 331, 396
BmgT120I GGNCC 2 cut(s) 168, 284
BmiI GGNNCC 3 cut(s) 285, 328, 454
BmrFI CCNGG 3 cut(s) 48, 331, 396
BmrI ACTGGG 3 cut(s) 107, 190, 521
BmsI GCATC 2 cut(s) 115, 415
BmuI ACTGGG 3 cut(s) 107, 190, 521
Bpu14I TTCGAA 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 148
BpuMI CCSGG 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 4 cut(s) 201, 592, 663, 664
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 5 cut(s) 102, 185, 429, 493, 527
Bse3DI GCAATG 1 cut(s) 362
BseBI CCWGG 2 cut(s) 331, 396
BseDI CCNNGG 1 cut(s) 394
BseLI CCNNNNNNNGG 4 cut(s) 201, 592, 663, 664
BseMI GCAATG 1 cut(s) 362
BseMII CTCAG 2 cut(s) 399, 500
BseNI ACTGG 5 cut(s) 102, 185, 429, 493, 527
BseXI GCAGC 4 cut(s) 121, 452, 492, 548
BshFI GGCC 6 cut(s) 5, 146, 169, 286, 492, 585
BsiSI CCGG 4 cut(s) 17, 47, 112, 147
BslFI GGGAC 2 cut(s) 178, 640
BslI CCNNNNNNNGG 4 cut(s) 201, 592, 663, 664
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 2 cut(s) 178, 640
BsmI GAATGC 2 cut(s) 485, 507
BsnI GGCC 6 cut(s) 5, 146, 169, 286, 492, 585
Bso31I GGTCTC 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 318
Bsp143I GATC 2 cut(s) 621, 705
BspACI CCGC 1 cut(s) 102
BspANI GGCC 6 cut(s) 5, 146, 169, 286, 492, 585
BspCNI CTCAG 2 cut(s) 400, 501
BspLI GGNNCC 3 cut(s) 285, 328, 454
BspT104I TTCGAA 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 5 cut(s) 102, 185, 429, 493, 527
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 2 cut(s) 621, 705
Bst2UI CCWGG 2 cut(s) 331, 396
Bst4CI ACNGT 1 cut(s) 204
BstAPI GCANNNNNTGC 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 318
BstC8I GCNNGC 3 cut(s) 18, 294, 312
BstDEI CTNAG 4 cut(s) 408, 509, 659, 715
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 2 cut(s) 624, 708
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 621, 705
BstMWI GCNNNNNNNGC 5 cut(s) 11, 134, 143, 489, 608
BstNI CCWGG 2 cut(s) 331, 396
BstNSI RCATGY 2 cut(s) 475, 525
BstSCI CCNGG 3 cut(s) 46, 329, 394
BstV1I GCAGC 4 cut(s) 121, 452, 492, 548
BstXI CCANNNNNNTGG 1 cut(s) 97
BsuRI GGCC 6 cut(s) 5, 146, 169, 286, 492, 585
BtgZI GCGATG 2 cut(s) 138, 152
BtsIMutI CAGTG 2 cut(s) 420, 436
Cac8I GCNNGC 3 cut(s) 18, 294, 312
CfoI GCGC 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 168, 284
Csp6I GTAC 3 cut(s) 178, 360, 668
CviAII CATG 3 cut(s) 417, 472, 522
CviJI RGCY 8 cut(s) 5, 134, 146, 169, 286, 468, 492, 585
CviKI_1 RGCY 8 cut(s) 5, 134, 146, 169, 286, 468, 492, 585
CviQI GTAC 3 cut(s) 178, 360, 668
DdeI CTNAG 4 cut(s) 408, 509, 659, 715
DpnI GATC 2 cut(s) 623, 707
DpnII GATC 2 cut(s) 621, 705
DraI TTTAAA 1 cut(s) 579
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
EaeI YGGCCR 2 cut(s) 3, 583
Eco31I GGTCTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 627
EcoO109I RGGNCCY 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 329, 394
FaeI CATG 3 cut(s) 420, 475, 525
FaqI GGGAC 2 cut(s) 178, 640
FatI CATG 3 cut(s) 416, 471, 521
FauI CCCGC 1 cut(s) 95
FbaI TGATCA 1 cut(s) 621
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 4 cut(s) 135, 441, 506, 537
Fsp4HI GCNGC 4 cut(s) 135, 441, 506, 537
GlaI GCGC 1 cut(s) 15
GluI GCNGC 4 cut(s) 135, 441, 506, 537
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 6 cut(s) 5, 146, 169, 286, 492, 585
HapII CCGG 4 cut(s) 17, 47, 112, 147
HhaI GCGC 1 cut(s) 16
Hin1II CATG 3 cut(s) 420, 475, 525
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HinfI GANTC 4 cut(s) 224, 237, 248, 653
HpaII CCGG 4 cut(s) 17, 47, 112, 147
HphI GGTGA 3 cut(s) 507, 607, 631
Hpy166II GTNNAC 5 cut(s) 31, 247, 274, 515, 598
Hpy188I TCNGA 1 cut(s) 652
Hpy188III TCNNGA 3 cut(s) 62, 382, 498
Hpy8I GTNNAC 5 cut(s) 31, 247, 274, 515, 598
HpyAV CCTTC 4 cut(s) 136, 297, 314, 379
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4IV ACGT 2 cut(s) 152, 191
HpyCH4V TGCA 4 cut(s) 128, 420, 536, 638
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 134, 143, 489, 608
HpyF3I CTNAG 4 cut(s) 408, 509, 659, 715
HpySE526I ACGT 2 cut(s) 152, 191
Hsp92II CATG 3 cut(s) 420, 475, 525
HspAI GCGC 1 cut(s) 14
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 2 cut(s) 621, 705
Lsp1109I GCAGC 4 cut(s) 121, 452, 492, 548
LweI GCATC 2 cut(s) 115, 415
MaeII ACGT 2 cut(s) 152, 191
MalI GATC 2 cut(s) 623, 707
MboI GATC 2 cut(s) 621, 705
MboII GAAGA 2 cut(s) 712, 715
MfeI CAATTG 1 cut(s) 570
MluCI AATT 3 cut(s) 262, 570, 639
MlyI GAGTC 2 cut(s) 242, 662
MnlI CCTC 5 cut(s) 150, 214, 317, 346, 540
MreI CGCCGGCG 1 cut(s) 16
MroNI GCCGGC 1 cut(s) 16
MseI TTAA 3 cut(s) 279, 459, 578
MslI CAYNNNNRTG 1 cut(s) 520
MspI CCGG 4 cut(s) 17, 47, 112, 147
MspR9I CCNGG 3 cut(s) 48, 331, 396
MunI CAATTG 1 cut(s) 570
Mva1269I GAATGC 2 cut(s) 485, 507
MvaI CCWGG 2 cut(s) 331, 396
MwoI GCNNNNNNNGC 5 cut(s) 11, 134, 143, 489, 608
NaeI GCCGGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 48
NdeII GATC 2 cut(s) 621, 705
NgoMIV GCCGGC 1 cut(s) 16
NlaIII CATG 3 cut(s) 420, 475, 525
NlaIV GGNNCC 3 cut(s) 285, 328, 454
NmeAIII GCCGAG 1 cut(s) 31
NspI RCATGY 2 cut(s) 475, 525
NspV TTCGAA 1 cut(s) 318
PciI ACATGT 1 cut(s) 471
PctI GAATGC 2 cut(s) 485, 507
PdiI GCCGGC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 224, 237
PfoI TCCNGGA 1 cut(s) 46
PkrI GCNGC 4 cut(s) 136, 442, 507, 538
PleI GAGTC 2 cut(s) 242, 661
PpsI GAGTC 2 cut(s) 242, 661
PscI ACATGT 1 cut(s) 471
Psp1406I AACGTT 1 cut(s) 152
Psp6I CCWGG 2 cut(s) 329, 394
PspGI CCWGG 2 cut(s) 329, 394
PspN4I GGNNCC 3 cut(s) 285, 328, 454
PspPI GGNCC 2 cut(s) 168, 284
RsaI GTAC 3 cut(s) 179, 361, 669
RsaNI GTAC 3 cut(s) 178, 360, 668
RseI CAYNNNNRTG 1 cut(s) 520
SaqAI TTAA 3 cut(s) 279, 459, 578
SatI GCNGC 4 cut(s) 135, 441, 506, 537
Sau3AI GATC 2 cut(s) 621, 705
Sau96I GGNCC 2 cut(s) 168, 284
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 2 cut(s) 242, 662
ScrFI CCNGG 3 cut(s) 48, 331, 396
SetI ASST 8 cut(s) 69, 136, 155, 161, 194, 357, 361, 621
SfaNI GCATC 2 cut(s) 115, 415
SfuI TTCGAA 1 cut(s) 318
SgrAI CRCCGGYG 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 520
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 3 cut(s) 262, 570, 639
SsiI CCGC 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 46, 329, 394
TaaI ACNGT 1 cut(s) 204
TaiI ACGT 2 cut(s) 155, 194
TaqI TCGA 2 cut(s) 186, 318
TasI AATT 3 cut(s) 262, 570, 639
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 2 cut(s) 224, 237
Tru1I TTAA 3 cut(s) 279, 459, 578
Tru9I TTAA 3 cut(s) 279, 459, 578
TscAI CASTG 2 cut(s) 427, 436
TseI GCWGC 4 cut(s) 134, 440, 505, 536
TspDTI ATGAA 3 cut(s) 155, 416, 659
TspRI CASTG 2 cut(s) 427, 436
XceI RCATGY 2 cut(s) 475, 525
XmiI GTMKAC 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.