Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006606

Physical Location & Seq

Genomic Coordinates Forward (+)

15535434 .. 15537602

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32175.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTGCCAAAGTTTCTGTCTCTCCCACAAGCCTCTTAAATCAGATTGTGGTTCCAGGTGATGTTGTTCTTGATTTGTCAAACATGAATAACCAAACAATCAAGCTCGGAAGTGGCCTTCTTCAGGATAATGATGCTATCTCTGCCATGAGAGCTGGCAAATTAAGTTACTCCAAGCCTAATAAGTATTGGCTCGAAAGTTCTCATAAACGGTATATACCTCGCCCTGATGATCATGTTCTTGGAATCGTGGTCGATTCTAGGGCAGATAATTTTTGGGTGGACATTAAAGGACCTCAATTAGCACTTTTGCCAGTTCTTGCATTCGAAGGAGGAACACGAAGAAATATTCCCAAGTTTGAGGTAGGCACTCTGCTTTATCTCCGGGTTGTCAAGACAAACATAGGAATGAATCCGGAGCTGTCTTGTACCGAGGCTAGTGGGAAAGCTGCATTATTTGGACCCTTGAGAGATGGTTTCATGTTTGAAACTTCAACTGGTCTTTCAAGAATGCTGTTGAATTCACCAACGCGCCCGGTCATTGAGGCTCTTGGAAAGAAACTCTCGTTCGAGATAGCTGTGGGCTTAAATGGCAGAGTTTGGGTAAATGCGACAGCTCCACGTATAGTCATTATCGTGGCCAATGCAATAATGAACTCGGAATCTCTAAGTGGGACTCAGCAGAGAATCATGGTTGAGAAATTGCTCGCGATAATTTCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

KH_6

Protein Analysis

241

Amino Acids

26.22

Weight (kDa)

9.38

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rrp40_N	PF18311	34 - 71	5.3e-08	Exosome complex exonuclease Rrp40 N-terminal domain
RRP40_S1	PF21262	72 - 154	3.6e-25	Exosome complex component RRP40, S1 domain
KH_6	PF15985	159 - 207	7e-14	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25355 AT2G25355 AT4G32175
fragaria_vesca	FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270
malus_domestica	MD06G1174300.v1.1 MD06G1174500.v1.1
prunus_persica	Prupe.5G174300_v2.0.a1
pyrus_communis	pycom06g15560
rosa_chinensis	RchiOBHm_Chr7g0193601
rosa_laevigata	RLG00000004257
rosa_multiflora	Rmu_co8153970.1_g000001 Rmu_ssc0000035.1_g000008
rosa_roxburghii	Rroxscaffold_3G00261970
rosa_rugosa	Rorug07G0010700 Rorug07G0010800 Rorug07G0010900 Rorug07G0010900
rosa_samantha	Rh7AG137500 Rh7BG137700 Rh7CG141300 Rh7DG138900
rosa_wichuraiana	Rw7G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	532, 710
AccIII	TCCGGA	1 cut(s)	415
AcoI	YGGCCR	1 cut(s)	639
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	430
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	4 cut(s)	488, 495, 507, 520
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	6 cut(s)	106, 155, 421, 449, 578, 617
AluI	AGCT	6 cut(s)	106, 155, 421, 449, 578, 617
Alw26I	GTCTC	1 cut(s)	25
Aor13HI	TCCGGA	1 cut(s)	415
AoxI	GGCC	2 cut(s)	115, 639
ApeKI	GCWGC	2 cut(s)	5, 449
ApoI	RAATTY	1 cut(s)	520
ArsI	GACNNNNNNTTYG	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	534
AspS9I	GGNCC	2 cut(s)	293, 461
AsuC2I	CCSGG	2 cut(s)	386, 536
AsuHPI	GGTGA	2 cut(s)	71, 516
AsuII	TTCGAA	1 cut(s)	327
AvaII	GGWCC	2 cut(s)	293, 461
BalI	TGGCCA	1 cut(s)	641
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	2 cut(s)	386, 536
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	261, 438
BisI	GCNGC	2 cut(s)	6, 450
BlsI	GCNGC	2 cut(s)	7, 451
Bme1390I	CCNGG	3 cut(s)	57, 386, 536
Bme18I	GGWCC	2 cut(s)	293, 461
BmgT120I	GGNCC	2 cut(s)	293, 461
BmiI	GGNNCC	2 cut(s)	54, 463
BmrFI	CCNGG	3 cut(s)	57, 386, 536
BmsI	GCATC	1 cut(s)	124
Bpu14I	TTCGAA	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	487
BpuMI	CCSGG	2 cut(s)	386, 536
BsaAI	YACGTR	1 cut(s)	623
BsaJI	CCNNGG	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	314, 502
BseAI	TCCGGA	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	692
BseNI	ACTGG	2 cut(s)	314, 502
BseXI	GCAGC	1 cut(s)	436
Bsh1236I	CGCG	2 cut(s)	532, 710
BshFI	GGCC	2 cut(s)	117, 641
BsiSI	CCGG	3 cut(s)	385, 416, 536
BslFI	GGGAC	1 cut(s)	688
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	688
BsmI	GAATGC	2 cut(s)	323, 516
BsnI	GGCC	2 cut(s)	117, 641
Bsp119I	TTCGAA	1 cut(s)	327
Bsp13I	TCCGGA	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	232
Bsp68I	TCGCGA	1 cut(s)	710
BspANI	GGCC	2 cut(s)	117, 641
BspCNI	CTCAG	1 cut(s)	691
BspEI	TCCGGA	1 cut(s)	415
BspFNI	CGCG	2 cut(s)	532, 710
BspLI	GGNNCC	2 cut(s)	54, 463
BspT104I	TTCGAA	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	314, 502
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	623
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	157, 708
BstDEI	CTNAG	2 cut(s)	668, 678
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstFNI	CGCG	2 cut(s)	532, 710
BstHHI	GCGC	1 cut(s)	534
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 152, 591
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	3 cut(s)	55, 384, 534
BstUI	CGCG	2 cut(s)	532, 710
BstV1I	GCAGC	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	117, 641
BtuMI	TCGCGA	1 cut(s)	710
Cac8I	GCNNGC	2 cut(s)	157, 708
CfoI	GCGC	1 cut(s)	534
Cfr13I	GGNCC	2 cut(s)	293, 461
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	5 cut(s)	85, 148, 236, 481, 691
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	2 cut(s)	668, 678
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	639
Eco47I	GGWCC	2 cut(s)	293, 461
Eco57I	CTGAAG	1 cut(s)	107
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRI	GAATTC	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	55
FaeI	CATG	5 cut(s)	88, 151, 239, 484, 694
FaqI	GGGAC	1 cut(s)	688
FatI	CATG	5 cut(s)	84, 147, 235, 480, 690
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	2 cut(s)	6, 450
Fsp4HI	GCNGC	2 cut(s)	6, 450
FspBI	CTAG	2 cut(s)	261, 438
GlaI	GCGC	1 cut(s)	533
GluI	GCNGC	2 cut(s)	6, 450
HaeIII	GGCC	2 cut(s)	117, 641
HapII	CCGG	3 cut(s)	385, 416, 536
HhaI	GCGC	1 cut(s)	534
Hin1II	CATG	5 cut(s)	88, 151, 239, 484, 694
Hin6I	GCGC	1 cut(s)	532
HinP1I	GCGC	1 cut(s)	532
HinfI	GANTC	6 cut(s)	246, 257, 412, 662, 676, 687
HpaII	CCGG	3 cut(s)	385, 416, 536
HphI	GGTGA	2 cut(s)	71, 516
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	4 cut(s)	45, 110, 661, 721
Hpy188III	TCNNGA	7 cut(s)	71, 125, 394, 416, 507, 571, 709
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	2 cut(s)	128, 323
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	3 cut(s)	323, 452, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 152, 591
HpyF3I	CTNAG	2 cut(s)	668, 678
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	5 cut(s)	88, 151, 239, 484, 694
HspAI	GCGC	1 cut(s)	532
Kpn2I	TCCGGA	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	418, 622
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	2 cut(s)	261, 438
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	2 cut(s)	113, 354
MlsI	TGGCCA	1 cut(s)	641
MluCI	AATT	6 cut(s)	161, 271, 299, 520, 701, 714
MluNI	TGGCCA	1 cut(s)	641
MlyI	GAGTC	1 cut(s)	670
MnlI	CCTC	7 cut(s)	44, 231, 306, 326, 355, 427, 538
Mox20I	TGGCCA	1 cut(s)	641
MroI	TCCGGA	1 cut(s)	415
MscI	TGGCCA	1 cut(s)	641
MseI	TTAA	4 cut(s)	38, 164, 288, 587
MslI	CAYNNNNRTG	2 cut(s)	407, 635
Msp20I	TGGCCA	1 cut(s)	641
MspI	CCGG	3 cut(s)	385, 416, 536
MspR9I	CCNGG	3 cut(s)	57, 386, 536
Mva1269I	GAATGC	2 cut(s)	323, 516
MvaI	CCWGG	1 cut(s)	57
MvnI	CGCG	2 cut(s)	532, 710
MwoI	GCNNNNNNNGC	3 cut(s)	143, 152, 591
NciI	CCSGG	2 cut(s)	386, 536
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	5 cut(s)	88, 151, 239, 484, 694
NlaIV	GGNNCC	2 cut(s)	54, 463
NruI	TCGCGA	1 cut(s)	710
NspV	TTCGAA	1 cut(s)	327
PctI	GAATGC	2 cut(s)	323, 516
PfeI	GAWTC	5 cut(s)	246, 257, 412, 662, 687
PkrI	GCNGC	2 cut(s)	7, 451
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
Ppu21I	YACGTR	1 cut(s)	623
PpuMI	RGGWCCY	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	54, 463
PspPI	GGNCC	2 cut(s)	293, 461
PspPPI	RGGWCCY	1 cut(s)	293
RruI	TCGCGA	1 cut(s)	710
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
RseI	CAYNNNNRTG	2 cut(s)	407, 635
SaqAI	TTAA	4 cut(s)	38, 164, 288, 587
SatI	GCNGC	2 cut(s)	6, 450
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	2 cut(s)	293, 461
SchI	GAGTC	1 cut(s)	670
ScrFI	CCNGG	3 cut(s)	57, 386, 536
SfaNI	GCATC	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	327
SinI	GGWCC	2 cut(s)	293, 461
SmiMI	CAYNNNNRTG	2 cut(s)	407, 635
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	6 cut(s)	161, 271, 299, 520, 701, 714
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	2 cut(s)	261, 438
StyD4I	CCNGG	3 cut(s)	55, 384, 534
TaaI	ACNGT	1 cut(s)	213
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	4 cut(s)	195, 255, 327, 570
TasI	AATT	6 cut(s)	161, 271, 299, 520, 701, 714
TfiI	GAWTC	5 cut(s)	246, 257, 412, 662, 687
Tru1I	TTAA	4 cut(s)	38, 164, 288, 587
Tru9I	TTAA	4 cut(s)	38, 164, 288, 587
TseI	GCWGC	2 cut(s)	5, 449
TspDTI	ATGAA	4 cut(s)	101, 425, 469, 668
VpaK11BI	GGWCC	2 cut(s)	293, 461
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	520
XspI	CTAG	2 cut(s)	261, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.