Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006606

Physical Location & Seq

Genomic Coordinates Forward (+)

3071369 .. 3074558

Gene Structure 3190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05270.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCCGAGATAGCCCCGGCGAACTTCGTAGACCAATCAGTGGTTCCAGGAGATGTGGTGCTTGACCTAACAAACATGGCGAACCAGACCATCAAACTCGGCGGTGGTCTCCGGCAGGATTGCGATGCAATAGCGGCGATGAAGGCCGGAACATTGAGGTTTTCAAAGCCCAACAAGTACTGGGTCGAAACGTCTCAGAAACGGTATGTGCCTTGTGTGGAGGATTCTGTGCTTGGAATCATGGTGGACTCAAAAGCAGATAATTTTCTGGTGGACATTAAAGGGCCTTCGTTGGCGTTTTTGCCTGTGCTTGCTTTCGAAGGAGGAACCAGGAGAAACATACCCAAGTTTGAGGTTGGTACATTGCTTTATGTTCGGGTCGTGAAAGCAAACCCTGGCATGAACCCTGAGTTGTCATGCATGGATGCCGGTGGAAAAGCAGCAGAGTATGGTCCCCTTAAAGATGGCTACATGTTTGAATGCTCAACTGGCCTTTCAAGAATGCTGCTGAGTTCACCAACACGTCCAGTTCTTGCGGCACTTGGGAAGAACATCTCCTTTGAAATAGCAATCGGTGTAAATGGCCGTGTTTGGGTGAACGCTACTGAAGCAGATAAGGTGATCATTGTTGCCAATGCAATTATGAACTCGGAGCACCTTAGTGGGGTACAGCAGATTGCTATGGTGGATAAACTTCTGAAGAAGATCAATGACTTAGCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

KH_6

Protein Analysis

242

Amino Acids

25.91

Weight (kDa)

6.6

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rrp40_N	PF18311	31 - 68	1.2e-07	Exosome complex exonuclease Rrp40 N-terminal domain
RRP40_S1	PF21262	69 - 151	8.7e-27	Exosome complex component RRP40, S1 domain
KH_6	PF15985	156 - 204	2.4e-15	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25355 AT2G25355 AT4G32175
fragaria_vesca	FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270
malus_domestica	MD06G1174300.v1.1 MD06G1174500.v1.1
prunus_persica	Prupe.5G174300_v2.0.a1
pyrus_communis	pycom06g15560
rosa_chinensis	RchiOBHm_Chr7g0193601
rosa_laevigata	RLG00000004257
rosa_multiflora	Rmu_co8153970.1_g000001 Rmu_ssc0000035.1_g000008
rosa_roxburghii	Rroxscaffold_3G00261970
rosa_rugosa	Rorug07G0010700 Rorug07G0010800 Rorug07G0010900 Rorug07G0010900
rosa_samantha	Rh7AG137500 Rh7BG137700 Rh7CG141300 Rh7DG138900
rosa_wichuraiana	Rw7G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	30
AciI	CCGC	3 cut(s)	102, 134, 536
AcoI	YGGCCR	2 cut(s)	3, 583
AcuI	CTGAAG	2 cut(s)	627, 719
AfaI	GTAC	3 cut(s)	179, 361, 669
AfiI	CCNNNNNNNGG	3 cut(s)	40, 592, 664
AflIII	ACRYGT	2 cut(s)	471, 521
AgsI	TTSAA	4 cut(s)	165, 479, 498, 563
AjiI	CACGTC	1 cut(s)	524
AjnI	CCWGG	3 cut(s)	46, 329, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	27, 59
AleI	CACNNNNGTG	1 cut(s)	660
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	2 cut(s)	113, 198
AoxI	GGCC	5 cut(s)	3, 144, 284, 490, 583
ApeKI	GCWGC	2 cut(s)	440, 505
AspS9I	GGNCC	2 cut(s)	284, 452
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	3 cut(s)	507, 607, 631
AsuII	TTCGAA	1 cut(s)	318
AvaII	GGWCC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	657
BbvI	GCAGC	2 cut(s)	452, 492
BccI	CCATC	2 cut(s)	98, 458
BceAI	ACGGC	1 cut(s)	570
BciT130I	CCWGG	3 cut(s)	48, 331, 396
BclI	TGATCA	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	2 cut(s)	113, 198
BisI	GCNGC	4 cut(s)	135, 441, 506, 537
BlsI	GCNGC	4 cut(s)	136, 442, 507, 538
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	4 cut(s)	17, 48, 331, 396
Bme18I	GGWCC	1 cut(s)	452
BmgBI	CACGTC	1 cut(s)	524
BmgT120I	GGNCC	2 cut(s)	284, 452
BmiI	GGNNCC	3 cut(s)	45, 328, 454
BmrFI	CCNGG	4 cut(s)	17, 48, 331, 396
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	115, 415
BmuI	ACTGGG	1 cut(s)	190
Bpu14I	TTCGAA	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	15, 394
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 592, 664
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	3 cut(s)	185, 493, 527
Bse3DI	GCAATG	1 cut(s)	362
BseBI	CCWGG	3 cut(s)	48, 331, 396
BseDI	CCNNGG	2 cut(s)	15, 394
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	3 cut(s)	40, 592, 664
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	3 cut(s)	209, 399, 500
BseNI	ACTGG	3 cut(s)	185, 493, 527
BseXI	GCAGC	2 cut(s)	452, 492
BshFI	GGCC	5 cut(s)	5, 146, 286, 492, 585
BsiHKAI	GWGCWC	1 cut(s)	657
BsiSI	CCGG	4 cut(s)	17, 112, 147, 429
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	3 cut(s)	40, 592, 664
BsmAI	GTCTC	2 cut(s)	113, 198
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	438
BsmI	GAATGC	2 cut(s)	485, 507
BsnI	GGCC	5 cut(s)	5, 146, 286, 492, 585
Bso31I	GGTCTC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	657
Bsp143I	GATC	2 cut(s)	621, 705
BspACI	CCGC	3 cut(s)	102, 134, 536
BspANI	GGCC	5 cut(s)	5, 146, 286, 492, 585
BspCNI	CTCAG	3 cut(s)	208, 400, 501
BspLI	GGNNCC	3 cut(s)	45, 328, 454
BspT104I	TTCGAA	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	3 cut(s)	185, 493, 527
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	2 cut(s)	15, 394
BssMI	GATC	2 cut(s)	621, 705
Bst2UI	CCWGG	3 cut(s)	48, 331, 396
Bst4CI	ACNGT	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	5 cut(s)	195, 408, 509, 659, 715
BstF5I	GGATG	1 cut(s)	430
BstKTI	GATC	2 cut(s)	624, 708
BstMAI	GTCTC	2 cut(s)	113, 198
BstMBI	GATC	2 cut(s)	621, 705
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 134, 143, 489, 608
BstNI	CCWGG	3 cut(s)	48, 331, 396
BstNSI	RCATGY	1 cut(s)	475
BstSCI	CCNGG	4 cut(s)	15, 46, 329, 394
BstV1I	GCAGC	2 cut(s)	452, 492
BsuRI	GGCC	5 cut(s)	5, 146, 286, 492, 585
BtgZI	GCGATG	2 cut(s)	138, 152
BtrI	CACGTC	1 cut(s)	524
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	312
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	284, 452
Csp6I	GTAC	3 cut(s)	178, 360, 668
CviAII	CATG	7 cut(s)	76, 241, 400, 417, 421, 472, 723
CviJI	RGCY	8 cut(s)	5, 14, 146, 169, 286, 468, 492, 585
CviKI_1	RGCY	8 cut(s)	5, 14, 146, 169, 286, 468, 492, 585
CviQI	GTAC	3 cut(s)	178, 360, 668
DdeI	CTNAG	5 cut(s)	195, 408, 509, 659, 715
DpnI	GATC	2 cut(s)	623, 707
DpnII	GATC	2 cut(s)	621, 705
EaeI	YGGCCR	2 cut(s)	3, 583
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	2 cut(s)	627, 719
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	3 cut(s)	46, 329, 394
EcoT22I	ATGCAT	1 cut(s)	422
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	7 cut(s)	79, 244, 403, 420, 424, 475, 726
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	7 cut(s)	75, 240, 399, 416, 420, 471, 722
FbaI	TGATCA	1 cut(s)	621
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	135, 441, 506, 537
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	4 cut(s)	135, 441, 506, 537
GluI	GCNGC	4 cut(s)	135, 441, 506, 537
HaeIII	GGCC	5 cut(s)	5, 146, 286, 492, 585
HapII	CCGG	4 cut(s)	17, 112, 147, 429
Hin1II	CATG	7 cut(s)	79, 244, 403, 420, 424, 475, 726
HinfI	GANTC	3 cut(s)	224, 237, 248
HpaII	CCGG	4 cut(s)	17, 112, 147, 429
HphI	GGTGA	3 cut(s)	507, 607, 631
Hpy166II	GTNNAC	5 cut(s)	31, 247, 274, 515, 598
Hpy188I	TCNGA	3 cut(s)	198, 652, 699
Hpy188III	TCNNGA	2 cut(s)	382, 498
Hpy8I	GTNNAC	5 cut(s)	31, 247, 274, 515, 598
HpyAV	CCTTC	3 cut(s)	136, 297, 314
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	2 cut(s)	191, 523
HpyCH4V	TGCA	3 cut(s)	128, 420, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 134, 143, 489, 608
HpyF3I	CTNAG	5 cut(s)	195, 408, 509, 659, 715
HpySE526I	ACGT	2 cut(s)	191, 523
Hsp92II	CATG	7 cut(s)	79, 244, 403, 420, 424, 475, 726
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	2 cut(s)	621, 705
LmnI	GCTCC	1 cut(s)	652
Lsp1109I	GCAGC	2 cut(s)	452, 492
LweI	GCATC	2 cut(s)	115, 415
MaeII	ACGT	2 cut(s)	191, 523
MalI	GATC	2 cut(s)	623, 707
MboI	GATC	2 cut(s)	621, 705
MboII	GAAGA	3 cut(s)	559, 712, 715
MhlI	GDGCHC	1 cut(s)	657
MluCI	AATT	2 cut(s)	262, 639
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	4 cut(s)	150, 214, 317, 346
Mph1103I	ATGCAT	1 cut(s)	422
MseI	TTAA	2 cut(s)	279, 459
MslI	CAYNNNNRTG	1 cut(s)	660
MspI	CCGG	4 cut(s)	17, 112, 147, 429
MspR9I	CCNGG	4 cut(s)	17, 48, 331, 396
Mva1269I	GAATGC	2 cut(s)	485, 507
MvaI	CCWGG	3 cut(s)	48, 331, 396
MwoI	GCNNNNNNNGC	5 cut(s)	11, 134, 143, 489, 608
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	2 cut(s)	621, 705
NlaIII	CATG	7 cut(s)	79, 244, 403, 420, 424, 475, 726
NlaIV	GGNNCC	3 cut(s)	45, 328, 454
NmeAIII	GCCGAG	2 cut(s)	31, 78
NsiI	ATGCAT	1 cut(s)	422
NspI	RCATGY	1 cut(s)	475
NspV	TTCGAA	1 cut(s)	318
OliI	CACNNNNGTG	1 cut(s)	660
PciI	ACATGT	1 cut(s)	471
PctI	GAATGC	2 cut(s)	485, 507
PfeI	GAWTC	2 cut(s)	224, 237
PflMI	CCANNNNNTGG	1 cut(s)	40
PfoI	TCCNGGA	1 cut(s)	46
PkrI	GCNGC	4 cut(s)	136, 442, 507, 538
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PscI	ACATGT	1 cut(s)	471
Psp6I	CCWGG	3 cut(s)	46, 329, 394
PspGI	CCWGG	3 cut(s)	46, 329, 394
PspN4I	GGNNCC	3 cut(s)	45, 328, 454
PspPI	GGNCC	2 cut(s)	284, 452
RsaI	GTAC	3 cut(s)	179, 361, 669
RsaNI	GTAC	3 cut(s)	178, 360, 668
RseI	CAYNNNNRTG	1 cut(s)	660
SaqAI	TTAA	2 cut(s)	279, 459
SatI	GCNGC	4 cut(s)	135, 441, 506, 537
Sau3AI	GATC	2 cut(s)	621, 705
Sau96I	GGNCC	2 cut(s)	284, 452
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	4 cut(s)	17, 48, 331, 396
SduI	GDGCHC	1 cut(s)	657
SetI	ASST	7 cut(s)	69, 161, 194, 357, 526, 621, 660
SfaNI	GCATC	2 cut(s)	115, 415
SfuI	TTCGAA	1 cut(s)	318
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	660
Sse9I	AATT	2 cut(s)	262, 639
SsiI	CCGC	3 cut(s)	102, 134, 536
StyD4I	CCNGG	4 cut(s)	15, 46, 329, 394
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	2 cut(s)	194, 526
TaqI	TCGA	2 cut(s)	186, 318
TasI	AATT	2 cut(s)	262, 639
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	2 cut(s)	137, 539
TfiI	GAWTC	2 cut(s)	224, 237
Tru1I	TTAA	2 cut(s)	279, 459
Tru9I	TTAA	2 cut(s)	279, 459
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	2 cut(s)	440, 505
TspDTI	ATGAA	3 cut(s)	155, 416, 659
TspRI	CASTG	1 cut(s)	45
Van91I	CCANNNNNTGG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	452
XceI	RCATGY	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	30
ZrmI	AGTACT	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.