Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006606

Physical Location & Seq

Genomic Coordinates Forward (+)

56082001 .. 56084926

Gene Structure 2926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCCGAGATAGCACCGGCGAACTTCGTAGGCCAATCAGTCGTTCCGGGAGATGTGGTTCTTGACCTAACAAAAATGGCGAACCAGACCATCAAACTGGGCGGCGGTCTCCGGCAGGACTGCGATGCAATAGCTGCGATGAAGGCCGGAACATTGAGGTTCTCAAGGCCCAACAAGTACTGGGTCGAAACGTCCCAGAAACGGTATGTGCCTTGTGTGGAGGATTCTGTTCTTGGAATCGTGGTGGACTCTAAAGCAGATAATTTTCTGGTGGACATTAAAGGGCCTTCGCTGGCGTTTTTGCCCGTGCTTGCTTTCGAAGGAGGAACCAGGAGAAACATACCAAAGTTTGAGGTAGGTACATTGCTTTATGTTCGGGTCGTGAAGGCAAACTCTGGTATGAACCCTGAGTTGTCATGCACTGATGCCAGTGGAAAAGCAGCAGAGTATGGTCCCCTTAAAGATGGCTATATGTTTGAATGCTCAACTGGCCTTTCAAGAATGCTGCTGAGTTCACCAACATGTCCAGTTCTTGCAGCACTTGGGAGGAACATCTCCTTTGAAATAGCAGTTGGTTTAAATGGCCGTGTTTGGGTGAACGCTACTGAAGCAGATAAGGTGATCATAGTTGCTAATGCAATTATGAACTCGGAGTCCCTTAGTGGAGTACAGCAGATTGGTATGGTGGATAGACTTTTGAAGAAGATCAATGACTTAGCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

KH_6

Protein Analysis

241

Amino Acids

25.77

Weight (kDa)

7.54

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rrp40_N	PF18311	31 - 68	2.6e-07	Exosome complex exonuclease Rrp40 N-terminal domain
RRP40_S1	PF21262	69 - 151	1.3e-27	Exosome complex component RRP40, S1 domain
KH_6	PF15985	156 - 204	5.1e-16	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25355 AT2G25355 AT4G32175
fragaria_vesca	FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270
malus_domestica	MD06G1174300.v1.1 MD06G1174500.v1.1
prunus_persica	Prupe.5G174300_v2.0.a1
pyrus_communis	pycom06g15560
rosa_chinensis	RchiOBHm_Chr7g0193601
rosa_laevigata	RLG00000004257
rosa_multiflora	Rmu_co8153970.1_g000001 Rmu_ssc0000035.1_g000008
rosa_roxburghii	Rroxscaffold_3G00261970
rosa_rugosa	Rorug07G0010700 Rorug07G0010800 Rorug07G0010900 Rorug07G0010900
rosa_samantha	Rh7AG137500 Rh7BG137700 Rh7CG141300 Rh7DG138900
rosa_wichuraiana	Rw7G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	102, 105
AcoI	YGGCCR	2 cut(s)	3, 583
AcuI	CTGAAG	1 cut(s)	627
AfaI	GTAC	3 cut(s)	179, 361, 669
AfiI	CCNNNNNNNGG	2 cut(s)	201, 592
AflIII	ACRYGT	1 cut(s)	521
AgsI	TTSAA	4 cut(s)	479, 498, 563, 700
AjnI	CCWGG	1 cut(s)	329
AjuI	GAANNNNNNNTTGG	4 cut(s)	27, 59, 555, 587
AloI	GAACNNNNNNTCC	4 cut(s)	42, 74, 638, 670
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	113
AoxI	GGCC	7 cut(s)	3, 31, 144, 167, 284, 490, 583
ApeKI	GCWGC	4 cut(s)	134, 440, 505, 536
AspS9I	GGNCC	3 cut(s)	168, 284, 452
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	3 cut(s)	507, 607, 631
AsuII	TTCGAA	1 cut(s)	318
AvaII	GGWCC	1 cut(s)	452
BbvI	GCAGC	4 cut(s)	121, 452, 492, 548
BccI	CCATC	2 cut(s)	98, 458
BceAI	ACGGC	1 cut(s)	570
BciT130I	CCWGG	1 cut(s)	331
BclI	TGATCA	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	113
BisI	GCNGC	5 cut(s)	103, 135, 441, 506, 537
BlsI	GCNGC	5 cut(s)	104, 136, 442, 507, 538
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	48, 331
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	3 cut(s)	168, 284, 452
BmiI	GGNNCC	2 cut(s)	328, 454
BmrFI	CCNGG	2 cut(s)	48, 331
BmrI	ACTGGG	2 cut(s)	107, 190
BmsI	GCATC	2 cut(s)	115, 415
BmuI	ACTGGG	2 cut(s)	107, 190
Bpu14I	TTCGAA	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	148
BpuMI	CCSGG	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 592
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	5 cut(s)	102, 185, 429, 493, 527
Bse3DI	GCAATG	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	331
BseLI	CCNNNNNNNGG	2 cut(s)	201, 592
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	2 cut(s)	399, 500
BseNI	ACTGG	5 cut(s)	102, 185, 429, 493, 527
BseXI	GCAGC	4 cut(s)	121, 452, 492, 548
BshFI	GGCC	7 cut(s)	5, 33, 146, 169, 286, 492, 585
BsiSI	CCGG	4 cut(s)	17, 47, 112, 147
BslFI	GGGAC	3 cut(s)	178, 438, 640
BslI	CCNNNNNNNGG	2 cut(s)	201, 592
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	3 cut(s)	178, 438, 640
BsmI	GAATGC	2 cut(s)	485, 507
BsnI	GGCC	7 cut(s)	5, 33, 146, 169, 286, 492, 585
Bso31I	GGTCTC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	621, 705
BspACI	CCGC	2 cut(s)	102, 105
BspANI	GGCC	7 cut(s)	5, 33, 146, 169, 286, 492, 585
BspCNI	CTCAG	2 cut(s)	400, 501
BspLI	GGNNCC	2 cut(s)	328, 454
BspT104I	TTCGAA	1 cut(s)	318
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	5 cut(s)	102, 185, 429, 493, 527
BssAI	RCCGGY	1 cut(s)	16
BssMI	GATC	2 cut(s)	621, 705
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	204
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	294, 312
BstDEI	CTNAG	4 cut(s)	408, 509, 659, 715
BstKTI	GATC	2 cut(s)	624, 708
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	621, 705
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 134, 143, 489, 608
BstNI	CCWGG	1 cut(s)	331
BstNSI	RCATGY	1 cut(s)	525
BstSCI	CCNGG	2 cut(s)	46, 329
BstV1I	GCAGC	4 cut(s)	121, 452, 492, 548
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuRI	GGCC	7 cut(s)	5, 33, 146, 169, 286, 492, 585
BtgZI	GCGATG	2 cut(s)	138, 152
BtsIMutI	CAGTG	2 cut(s)	420, 436
Cac8I	GCNNGC	2 cut(s)	294, 312
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	168, 284, 452
Csp6I	GTAC	3 cut(s)	178, 360, 668
CviAII	CATG	2 cut(s)	417, 522
CviJI	RGCY	9 cut(s)	5, 33, 134, 146, 169, 286, 468, 492, 585
CviKI_1	RGCY	9 cut(s)	5, 33, 134, 146, 169, 286, 468, 492, 585
CviQI	GTAC	3 cut(s)	178, 360, 668
DdeI	CTNAG	4 cut(s)	408, 509, 659, 715
DpnI	GATC	2 cut(s)	623, 707
DpnII	GATC	2 cut(s)	621, 705
DraI	TTTAAA	1 cut(s)	579
EaeI	YGGCCR	2 cut(s)	3, 583
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	329
FaeI	CATG	2 cut(s)	420, 525
FaqI	GGGAC	3 cut(s)	178, 438, 640
FatI	CATG	2 cut(s)	416, 521
FbaI	TGATCA	1 cut(s)	621
Fnu4HI	GCNGC	5 cut(s)	103, 135, 441, 506, 537
Fsp4HI	GCNGC	5 cut(s)	103, 135, 441, 506, 537
GluI	GCNGC	5 cut(s)	103, 135, 441, 506, 537
HaeIII	GGCC	7 cut(s)	5, 33, 146, 169, 286, 492, 585
HapII	CCGG	4 cut(s)	17, 47, 112, 147
Hin1II	CATG	2 cut(s)	420, 525
HinfI	GANTC	4 cut(s)	224, 237, 248, 653
HpaII	CCGG	4 cut(s)	17, 47, 112, 147
HphI	GGTGA	3 cut(s)	507, 607, 631
Hpy166II	GTNNAC	4 cut(s)	247, 274, 515, 598
Hpy188I	TCNGA	1 cut(s)	652
Hpy188III	TCNNGA	3 cut(s)	62, 382, 498
Hpy8I	GTNNAC	4 cut(s)	247, 274, 515, 598
HpyAV	CCTTC	4 cut(s)	136, 297, 314, 379
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	4 cut(s)	128, 420, 536, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 134, 143, 489, 608
HpyF3I	CTNAG	4 cut(s)	408, 509, 659, 715
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	420, 525
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	2 cut(s)	621, 705
Lsp1109I	GCAGC	4 cut(s)	121, 452, 492, 548
LweI	GCATC	2 cut(s)	115, 415
MaeII	ACGT	1 cut(s)	191
MalI	GATC	2 cut(s)	623, 707
MboI	GATC	2 cut(s)	621, 705
MboII	GAAGA	2 cut(s)	712, 715
MluCI	AATT	2 cut(s)	262, 639
MlyI	GAGTC	2 cut(s)	242, 662
MnlI	CCTC	5 cut(s)	150, 214, 317, 346, 540
MseI	TTAA	3 cut(s)	279, 459, 578
MslI	CAYNNNNRTG	1 cut(s)	520
MspI	CCGG	4 cut(s)	17, 47, 112, 147
MspR9I	CCNGG	2 cut(s)	48, 331
Mva1269I	GAATGC	2 cut(s)	485, 507
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	5 cut(s)	11, 134, 143, 489, 608
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	621, 705
NlaIII	CATG	2 cut(s)	420, 525
NlaIV	GGNNCC	2 cut(s)	328, 454
NmeAIII	GCCGAG	1 cut(s)	31
NspI	RCATGY	1 cut(s)	525
NspV	TTCGAA	1 cut(s)	318
PciI	ACATGT	1 cut(s)	521
PctI	GAATGC	2 cut(s)	485, 507
PfeI	GAWTC	2 cut(s)	224, 237
PfoI	TCCNGGA	1 cut(s)	46
PkrI	GCNGC	5 cut(s)	104, 136, 442, 507, 538
PleI	GAGTC	2 cut(s)	242, 661
PpsI	GAGTC	2 cut(s)	242, 661
PscI	ACATGT	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	328, 454
PspPI	GGNCC	3 cut(s)	168, 284, 452
RsaI	GTAC	3 cut(s)	179, 361, 669
RsaNI	GTAC	3 cut(s)	178, 360, 668
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	3 cut(s)	279, 459, 578
SatI	GCNGC	5 cut(s)	103, 135, 441, 506, 537
Sau3AI	GATC	2 cut(s)	621, 705
Sau96I	GGNCC	3 cut(s)	168, 284, 452
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	2 cut(s)	242, 662
ScrFI	CCNGG	2 cut(s)	48, 331
SetI	ASST	7 cut(s)	69, 136, 161, 194, 357, 361, 621
SfaNI	GCATC	2 cut(s)	115, 415
SfuI	TTCGAA	1 cut(s)	318
SgrAI	CRCCGGYG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	2 cut(s)	262, 639
SsiI	CCGC	2 cut(s)	102, 105
StyD4I	CCNGG	2 cut(s)	46, 329
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	186, 318
TasI	AATT	2 cut(s)	262, 639
TatI	WGTACW	2 cut(s)	177, 667
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	224, 237
Tru1I	TTAA	3 cut(s)	279, 459, 578
Tru9I	TTAA	3 cut(s)	279, 459, 578
TscAI	CASTG	2 cut(s)	427, 436
TseI	GCWGC	4 cut(s)	134, 440, 505, 536
TspDTI	ATGAA	3 cut(s)	155, 416, 659
TspRI	CASTG	2 cut(s)	427, 436
VpaK11BI	GGWCC	1 cut(s)	452
XceI	RCATGY	1 cut(s)	525
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.