Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006606

Physical Location & Seq

Genomic Coordinates Reverse (-)

877748 .. 882800

Gene Structure 5053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0010700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGATTGGCAGAAGCATCAGAAGGAGTTCCACCAGAAAAGGAGGAAAATATTTCGTCCGACAAACGTGGCTCGTGGCCCACCATTGTACCGATACTGTCCCAACTTAACCACCTGCTTTCTAAACAGCCTCCTTCACTCCATCAGCCTTCTTCCTCCAGAAGTCTCTATCTACACCGACGTCATCTCCTCGAGTCTTCCAGAATCCAGACTATCATCATCAGCTGCAACTCCCTCTTTCGCTATCCGCGGCTCCACCGGAAGTCTGGAAGTATCTATCTACACTAACATCTCTACACCGACATCAACTCACATCAACGGGGAAGAAGGAAAAGAAGGAGAAGAGAGAGACGGGAAGCTCTTGCTTAAAAGAAAACAAGTTGTGCTCACTACTACTGTTCCTCTTTCAAGTGAATTCTCTCTCAGATCATCTGTGTTCCAGACGAAGCTTGGGGCCAGCAAGCGTAAAGGTTCAAGGTTTGACCTTTTGATTTTTGTTCTCAAGAATTTGATATCAGGAAGATTGAACATAGATCATCTTTATAAGAGATCAACCACTCAGATACAAAAGACAAGACGGCAAATCAGATTGTGTGCGTTTTGGAAAAGCTCCCAAATTAAAATTCCACTGATAGAGCTTACTGATTCAGCGAAGCACAATAGAACGGCTTTGAGTCTGAGTTTATTTGAGGATCTTCACTTACAGAGTTTGATTTCTTATTATATGCTCCGATTCATAATTTTCGGATTTTGTTGTTCATCCAATACAGAAAAAGAGAGGAGACAAAACAAAGAGAGAGAGAAGAGAACAGGGAATAAGGAAAAGAAGCAGAAGAGAGAGGCGGAAAGTTGTTACTCAAAACAAAACAAGTGGAAGGGTACAATAGTGAATCTTCTTGACAGGACCCGCCCCGGATTTCACCCCGAAATCCGAAGTGGCCCTGCGGGGCCCACTTTAGAAGAAATTCTACCAAAAATTTGGCGGAACTTCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

KH_6

Protein Analysis

331

Amino Acids

38.03

Weight (kDa)

10.06

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25355 AT2G25355 AT4G32175
fragaria_vesca	FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270
malus_domestica	MD06G1174300.v1.1 MD06G1174500.v1.1
prunus_persica	Prupe.5G174300_v2.0.a1
pyrus_communis	pycom06g15560
rosa_chinensis	RchiOBHm_Chr7g0193601
rosa_laevigata	RLG00000004257
rosa_multiflora	Rmu_co8153970.1_g000001 Rmu_ssc0000035.1_g000008
rosa_roxburghii	Rroxscaffold_3G00261970
rosa_rugosa	Rorug07G0010700 Rorug07G0010800 Rorug07G0010900 Rorug07G0010900
rosa_samantha	Rh7AG137500 Rh7BG137700 Rh7CG141300 Rh7DG138900
rosa_wichuraiana	Rw7G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
AarI	CACCTGC	1 cut(s)	122
AatII	GACGTC	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	122
AccII	CGCG	1 cut(s)	249
AciI	CCGC	6 cut(s)	247, 249, 842, 907, 944, 982
AclWI	GGATC	1 cut(s)	699
AcsI	RAATTY	5 cut(s)	413, 505, 621, 963, 975
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	2 cut(s)	89, 880
AgsI	TTSAA	3 cut(s)	408, 474, 526
AjuI	GAANNNNNNNTTGG	2 cut(s)	606, 638
AluBI	AGCT	5 cut(s)	224, 358, 448, 609, 637
AluI	AGCT	5 cut(s)	224, 358, 448, 609, 637
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	3 cut(s)	169, 342, 775
AlwI	GGATC	1 cut(s)	699
Ama87I	CYCGRG	1 cut(s)	190
AoxI	GGCC	4 cut(s)	76, 453, 937, 947
ApaI	GGGCCC	1 cut(s)	951
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	5 cut(s)	413, 505, 621, 963, 975
Asp700I	GAANNNNTTC	2 cut(s)	26, 963
AspS9I	GGNCC	6 cut(s)	77, 453, 903, 938, 947, 948
AsuC2I	CCSGG	1 cut(s)	912
AsuHPI	GGTGA	1 cut(s)	911
AvaI	CYCGRG	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	903
BaeGI	GKGCMC	1 cut(s)	951
BaeI	ACNNNNGTAYC	4 cut(s)	71, 104, 870, 903
BanII	GRGCYC	1 cut(s)	951
BarI	GAAGNNNNNNTAC	2 cut(s)	951, 983
BauI	CACGAG	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	2 cut(s)	593, 681
BcnI	CCSGG	1 cut(s)	912
BcoDI	GTCTC	3 cut(s)	169, 342, 775
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	2 cut(s)	225, 250
BlsI	GCNGC	2 cut(s)	226, 251
Bme1390I	CCNGG	1 cut(s)	912
Bme18I	GGWCC	1 cut(s)	903
BmeT110I	CYCGRG	1 cut(s)	190
BmgT120I	GGNCC	6 cut(s)	77, 453, 903, 938, 947, 948
BmiI	GGNNCC	5 cut(s)	253, 454, 905, 948, 949
BmrFI	CCNGG	1 cut(s)	912
BmsI	GCATC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	912
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	247, 910
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
BseDI	CCNNGG	2 cut(s)	247, 910
BseGI	GGATG	1 cut(s)	758
BseMII	CTCAG	3 cut(s)	436, 572, 668
BseRI	GAGGAG	2 cut(s)	178, 793
BseSI	GKGCMC	1 cut(s)	951
BseXI	GCAGC	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	4 cut(s)	78, 455, 939, 949
BsiHKAI	GWGCWC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	258, 912
BslFI	GGGAC	1 cut(s)	84
BsmAI	GTCTC	3 cut(s)	169, 342, 775
BsmBI	CGTCTC	1 cut(s)	342
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	4 cut(s)	78, 455, 939, 949
BsoBI	CYCGRG	1 cut(s)	190
Bsp120I	GGGCCC	1 cut(s)	947
Bsp1286I	GDGCHC	2 cut(s)	387, 951
Bsp143I	GATC	4 cut(s)	425, 532, 548, 691
BspACI	CCGC	6 cut(s)	247, 249, 842, 907, 944, 982
BspANI	GGCC	4 cut(s)	78, 455, 939, 949
BspCNI	CTCAG	3 cut(s)	435, 571, 669
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	5 cut(s)	253, 454, 905, 948, 949
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	699
BssECI	CCNNGG	2 cut(s)	247, 910
BssMI	GATC	4 cut(s)	425, 532, 548, 691
BssNI	GRCGYC	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	98, 397
Bst6I	CTCTTC	3 cut(s)	336, 797, 827
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	457, 461
BstDEI	CTNAG	3 cut(s)	422, 558, 677
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	758
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	4 cut(s)	428, 535, 551, 694
BstMAI	GTCTC	3 cut(s)	169, 342, 775
BstMBI	GATC	4 cut(s)	425, 532, 548, 691
BstSCI	CCNGG	1 cut(s)	910
BstSLI	GKGCMC	1 cut(s)	951
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	691
BstXI	CCANNNNNNTGG	1 cut(s)	978
BstYI	RGATCY	1 cut(s)	691
BsuRI	GGCC	4 cut(s)	78, 455, 939, 949
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	758
BtsIMutI	CAGTG	1 cut(s)	626
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	2 cut(s)	457, 461
Cfr13I	GGNCC	6 cut(s)	77, 453, 903, 938, 947, 948
Cfr42I	CCGCGG	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	88, 879
CspCI	CAANNNNNGTGG	2 cut(s)	851, 886
CviQI	GTAC	2 cut(s)	88, 879
DdeI	CTNAG	3 cut(s)	422, 558, 677
DpnI	GATC	4 cut(s)	427, 534, 550, 693
DpnII	GATC	4 cut(s)	425, 532, 548, 691
Eam1104I	CTCTTC	3 cut(s)	336, 797, 827
EarI	CTCTTC	3 cut(s)	336, 797, 827
EciI	GGCGGA	1 cut(s)	857
Eco24I	GRGCYC	1 cut(s)	951
Eco32I	GATATC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	903
Eco88I	CYCGRG	1 cut(s)	190
EcoO109I	RGGNCCY	2 cut(s)	903, 947
EcoRI	GAATTC	1 cut(s)	413
EcoRV	GATATC	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	951
Esp3I	CGTCTC	1 cut(s)	342
FaiI	YATR	5 cut(s)	530, 543, 723, 725, 737
FaqI	GGGAC	1 cut(s)	84
FauI	CCCGC	2 cut(s)	914, 937
Fnu4HI	GCNGC	2 cut(s)	225, 250
FokI	GGATG	1 cut(s)	745
FriOI	GRGCYC	1 cut(s)	951
Fsp4HI	GCNGC	2 cut(s)	225, 250
GluI	GCNGC	2 cut(s)	225, 250
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	4 cut(s)	78, 455, 939, 949
HapII	CCGG	2 cut(s)	258, 912
Hin1I	GRCGYC	1 cut(s)	180
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	6 cut(s)	193, 203, 644, 673, 732, 889
HpaII	CCGG	2 cut(s)	258, 912
HphI	GGTGA	1 cut(s)	911
Hpy188I	TCNGA	9 cut(s)	21, 60, 425, 561, 587, 678, 731, 746, 932
Hpy188III	TCNNGA	8 cut(s)	158, 200, 207, 266, 439, 502, 516, 896
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	6 cut(s)	16, 143, 158, 320, 329, 868
HpyCH4III	ACNGT	2 cut(s)	98, 397
HpyCH4IV	ACGT	2 cut(s)	66, 180
HpyCH4V	TGCA	1 cut(s)	227
HpyF3I	CTNAG	3 cut(s)	422, 558, 677
HpySE526I	ACGT	2 cut(s)	66, 180
Hsp92I	GRCGYC	1 cut(s)	180
KspI	CCGCGG	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	425, 532, 548, 691
LmnI	GCTCC	3 cut(s)	257, 614, 732
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	25
MaeII	ACGT	2 cut(s)	66, 180
MaeIII	GTNAC	1 cut(s)	851
MalI	GATC	4 cut(s)	427, 534, 550, 693
MboI	GATC	4 cut(s)	425, 532, 548, 691
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	2 cut(s)	387, 951
MluCI	AATT	7 cut(s)	413, 505, 615, 621, 738, 963, 975
MlyI	GAGTC	2 cut(s)	202, 682
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	9 cut(s)	36, 140, 165, 199, 244, 411, 682, 771, 832
MroXI	GAANNNNTTC	2 cut(s)	26, 963
MseI	TTAA	4 cut(s)	107, 366, 618, 994
MspA1I	CMGCKG	2 cut(s)	224, 249
MspI	CCGG	2 cut(s)	258, 912
MspR9I	CCNGG	1 cut(s)	912
MvnI	CGCG	1 cut(s)	249
NciI	CCSGG	1 cut(s)	912
NdeII	GATC	4 cut(s)	425, 532, 548, 691
NlaIV	GGNNCC	5 cut(s)	253, 454, 905, 948, 949
PaeR7I	CTCGAG	1 cut(s)	190
PaqCI	CACCTGC	1 cut(s)	122
PdmI	GAANNNNTTC	2 cut(s)	26, 963
PfeI	GAWTC	4 cut(s)	203, 644, 732, 889
PkrI	GCNGC	2 cut(s)	226, 251
PleI	GAGTC	2 cut(s)	201, 681
PpsI	GAGTC	2 cut(s)	201, 681
PpuMI	RGGWCCY	1 cut(s)	903
PsiI	TTATAA	1 cut(s)	543
Psp5II	RGGWCCY	1 cut(s)	903
PspN4I	GGNNCC	5 cut(s)	253, 454, 905, 948, 949
PspOMI	GGGCCC	1 cut(s)	947
PspPI	GGNCC	6 cut(s)	77, 453, 903, 938, 947, 948
PspPPI	RGGWCCY	1 cut(s)	903
PspXI	VCTCGAGB	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	691
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	2 cut(s)	89, 880
RsaNI	GTAC	2 cut(s)	88, 879
SacII	CCGCGG	1 cut(s)	250
SaqAI	TTAA	4 cut(s)	107, 366, 618, 994
SatI	GCNGC	2 cut(s)	225, 250
Sau3AI	GATC	4 cut(s)	425, 532, 548, 691
Sau96I	GGNCC	6 cut(s)	77, 453, 903, 938, 947, 948
SchI	GAGTC	2 cut(s)	202, 682
ScrFI	CCNGG	1 cut(s)	912
SduI	GDGCHC	2 cut(s)	387, 951
SfaNI	GCATC	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	190
Sfr303I	CCGCGG	1 cut(s)	250
SgrBI	CCGCGG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	903
SlaI	CTCGAG	1 cut(s)	190
SmlI	CTYRAG	2 cut(s)	190, 500
SmoI	CTYRAG	2 cut(s)	190, 500
Sse9I	AATT	7 cut(s)	413, 505, 615, 621, 738, 963, 975
SsiI	CCGC	6 cut(s)	247, 249, 842, 907, 944, 982
SspI	AATATT	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	910
TaaI	ACNGT	2 cut(s)	98, 397
TaiI	ACGT	2 cut(s)	69, 183
TaqI	TCGA	1 cut(s)	191
TasI	AATT	7 cut(s)	413, 505, 615, 621, 738, 963, 975
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	4 cut(s)	203, 644, 732, 889
Tru1I	TTAA	4 cut(s)	107, 366, 618, 994
Tru9I	TTAA	4 cut(s)	107, 366, 618, 994
TscAI	CASTG	1 cut(s)	633
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	724, 747
TspRI	CASTG	1 cut(s)	633
VpaK11BI	GGWCC	1 cut(s)	903
XapI	RAATTY	5 cut(s)	413, 505, 621, 963, 975
XcmI	CCANNNNNNNNNTGG	2 cut(s)	262, 446
XhoI	CTCGAG	1 cut(s)	190
XmnI	GAANNNNTTC	2 cut(s)	26, 963
ZraI	GACGTC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.