Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006606

Physical Location & Seq

Genomic Coordinates Reverse (-)

31457380 .. 31462258

Gene Structure 4879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1174500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAAGAAAAACCTTCCGGTTCGCCGGCGAGCTTCATCGACAAGCCAGTGATTCCCGGCGATGTGGTTCTCGACCTCTCCGACATGACTAACCAAACCATCAAGCTCGGCGGCGGTCTCCGCCAGGATTTTGATTCAATAGTTGCGATGAAGGCTGGTACTTTGAGGTTTACGAAGCTAAACAAGTATTGGGTCGAAACATCTCAGAAAAGGTATGTGCCTTGTGTGGGGGACTCGGTACTTGGAATCGTGGCGGATTCGAGAGCAGATAATTTTCTGGTGGACATTAAAGGACCTACATTGGCGTATCTGCCGGTGCTTGCTTTCGAAGGAGGAACTAGGCGAAACATACCAAAGTTTGAGGTGGGTACATTGCTGTATGTTCGGGTTGTGAAGGCAAACCCTGGCATGAATCCTGAGTTGTCATGCACTGATGTGGAAAAGCAGCAGAGTATGGTATCCTTAAAGATGGCTACAATTTTGACTGTTCGACTGGCCTTTCAAGAATGTGAGATGTTGCTGAGATCACCAAGATGTCCAGTTCTCGAGGAACTTGGGAAGAAAATTTCCTTTGAAATAGCAGTTGGTTTGAACGGCCGTGTTTGGGTCAATGCTGGTTCGCCATCTTTGATCATCGTCGTTTCTAATGCAATCATGAACTCGGAATCTCTGACTGGAGTGCAGCAGAGAATCATGGTGGATAAACTCATTCAGAATTTGAAGTTATCAAGTTACATGACAATGCAAGACCTGCAAGCTTTGCAGCTGTCAAATTCACCCGTTGTGTTGTCCACAAGACATTTTGCGACGAGGGTTAAGAAGACGATGAAATCCCGCGATCGCAATCTCATATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

KH_6

Protein Analysis

286

Amino Acids

31.55

Weight (kDa)

9.33

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rrp40_N	PF18311	34 - 71	2.1e-08	Exosome complex exonuclease Rrp40 N-terminal domain
RRP40_S1	PF21262	72 - 150	2.5e-25	Exosome complex component RRP40, S1 domain
KH_6	PF15985	171 - 208	1.2e-11	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25355 AT2G25355 AT4G32175
fragaria_vesca	FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270
malus_domestica	MD06G1174300.v1.1 MD06G1174500.v1.1
prunus_persica	Prupe.5G174300_v2.0.a1
pyrus_communis	pycom06g15560
rosa_chinensis	RchiOBHm_Chr7g0193601
rosa_laevigata	RLG00000004257
rosa_multiflora	Rmu_co8153970.1_g000001 Rmu_ssc0000035.1_g000008
rosa_roxburghii	Rroxscaffold_3G00261970
rosa_rugosa	Rorug07G0010700 Rorug07G0010800 Rorug07G0010900 Rorug07G0010900
rosa_samantha	Rh7AG137500 Rh7BG137700 Rh7CG141300 Rh7DG138900
rosa_wichuraiana	Rw7G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	759
AccII	CGCG	1 cut(s)	837
AciI	CCGC	5 cut(s)	111, 114, 121, 254, 835
AcoI	YGGCCR	1 cut(s)	595
AcsI	RAATTY	3 cut(s)	564, 715, 772
AfaI	GTAC	3 cut(s)	160, 240, 370
AfiI	CCNNNNNNNGG	2 cut(s)	227, 604
AgsI	TTSAA	5 cut(s)	138, 503, 575, 592, 721
AjnI	CCWGG	2 cut(s)	123, 403
AjuI	GAANNNNNNNTTGG	2 cut(s)	567, 599
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	5 cut(s)	33, 106, 178, 758, 766
AluI	AGCT	5 cut(s)	33, 106, 178, 758, 766
Alw26I	GTCTC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	545
AoxI	GGCC	2 cut(s)	495, 595
ApeKI	GCWGC	3 cut(s)	445, 682, 763
ApoI	RAATTY	3 cut(s)	564, 715, 772
AsiSI	GCGATCGC	1 cut(s)	841
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	519, 768
AsuII	TTCGAA	1 cut(s)	327
AvaI	CYCGRG	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	827
BbvI	GCAGC	3 cut(s)	457, 694, 775
BccI	CCATC	3 cut(s)	107, 463, 631
BceAI	ACGGC	2 cut(s)	582, 610
BciT130I	CCWGG	2 cut(s)	125, 405
BciVI	GTATCC	1 cut(s)	469
BclI	TGATCA	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	759
BfuI	GTATCC	1 cut(s)	469
BisI	GCNGC	4 cut(s)	112, 446, 683, 764
BlsI	GCNGC	4 cut(s)	113, 447, 684, 765
Bme1390I	CCNGG	3 cut(s)	57, 125, 405
Bme18I	GGWCC	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	293
BmrFI	CCNGG	3 cut(s)	57, 125, 405
BpiI	GAAGAC	1 cut(s)	827
BpmI	CTGGAG	1 cut(s)	696
Bpu14I	TTCGAA	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	843
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	403
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 604
Bse118I	RCCGGY	2 cut(s)	25, 313
Bse1I	ACTGG	4 cut(s)	47, 498, 539, 679
Bse3DI	GCAATG	1 cut(s)	371
Bse8I	GATNNNNATC	1 cut(s)	843
BseBI	CCWGG	2 cut(s)	125, 405
BseDI	CCNNGG	1 cut(s)	403
BseJI	GATNNNNATC	1 cut(s)	843
BseLI	CCNNNNNNNGG	2 cut(s)	227, 604
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	3 cut(s)	218, 408, 512
BseNI	ACTGG	4 cut(s)	47, 498, 539, 679
BseX3I	CGGCCG	1 cut(s)	595
BseXI	GCAGC	3 cut(s)	457, 694, 775
BsgI	GTGCAG	1 cut(s)	701
Bsh1236I	CGCG	1 cut(s)	837
Bsh1285I	CGRYCG	2 cut(s)	598, 841
BshFI	GGCC	2 cut(s)	497, 597
BsiEI	CGRYCG	2 cut(s)	598, 841
BsiHKCI	CYCGRG	1 cut(s)	545
BsiSI	CCGG	4 cut(s)	18, 26, 57, 314
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	227, 604
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	497, 597
Bso31I	GGTCTC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	545
Bsp119I	TTCGAA	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	524, 630, 838
BspACI	CCGC	5 cut(s)	111, 114, 121, 254, 835
BspANI	GGCC	2 cut(s)	497, 597
BspCNI	CTCAG	3 cut(s)	217, 409, 513
BspFNI	CGCG	1 cut(s)	837
BspHI	TCATGA	1 cut(s)	654
BspMI	ACCTGC	1 cut(s)	759
BspT104I	TTCGAA	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	371
BsrFI	RCCGGY	2 cut(s)	25, 313
BsrI	ACTGG	4 cut(s)	47, 498, 539, 679
BssAI	RCCGGY	2 cut(s)	25, 313
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	3 cut(s)	524, 630, 838
Bst2UI	CCWGG	2 cut(s)	125, 405
Bst4CI	ACNGT	1 cut(s)	487
BstAPI	GCANNNNNTGC	2 cut(s)	751, 760
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	4 cut(s)	27, 31, 321, 756
BstDEI	CTNAG	3 cut(s)	204, 417, 521
BstFNI	CGCG	1 cut(s)	837
BstKTI	GATC	3 cut(s)	527, 633, 841
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	3 cut(s)	524, 630, 838
BstMCI	CGRYCG	2 cut(s)	598, 841
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 152, 751, 760
BstNI	CCWGG	2 cut(s)	125, 405
BstSCI	CCNGG	3 cut(s)	55, 123, 403
BstUI	CGCG	1 cut(s)	837
BstV1I	GCAGC	3 cut(s)	457, 694, 775
BstV2I	GAAGAC	1 cut(s)	827
BstZI	CGGCCG	1 cut(s)	595
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	497, 597
BtgZI	GCGATG	2 cut(s)	75, 161
BtsIMutI	CAGTG	2 cut(s)	54, 429
BveI	ACCTGC	1 cut(s)	759
Cac8I	GCNNGC	4 cut(s)	27, 31, 321, 756
CciI	TCATGA	1 cut(s)	654
Cfr10I	RCCGGY	2 cut(s)	25, 313
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	3 cut(s)	159, 239, 369
CviAII	CATG	6 cut(s)	85, 409, 426, 655, 694, 736
CviQI	GTAC	3 cut(s)	159, 239, 369
DdeI	CTNAG	3 cut(s)	204, 417, 521
DpnI	GATC	3 cut(s)	526, 632, 840
DpnII	GATC	3 cut(s)	524, 630, 838
EaeI	YGGCCR	1 cut(s)	595
EagI	CGGCCG	1 cut(s)	595
EciI	GGCGGA	2 cut(s)	110, 269
EclXI	CGGCCG	1 cut(s)	595
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	293
Eco52I	CGGCCG	1 cut(s)	595
Eco88I	CYCGRG	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	123, 403
FaeI	CATG	6 cut(s)	88, 412, 429, 658, 697, 739
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	6 cut(s)	84, 408, 425, 654, 693, 735
FauI	CCCGC	1 cut(s)	842
FauNDI	CATATG	1 cut(s)	851
FbaI	TGATCA	1 cut(s)	630
Fnu4HI	GCNGC	4 cut(s)	112, 446, 683, 764
Fsp4HI	GCNGC	4 cut(s)	112, 446, 683, 764
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	4 cut(s)	112, 446, 683, 764
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	2 cut(s)	497, 597
HapII	CCGG	4 cut(s)	18, 26, 57, 314
Hin1II	CATG	6 cut(s)	88, 412, 429, 658, 697, 739
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	8 cut(s)	52, 134, 233, 246, 257, 412, 665, 690
HpaII	CCGG	4 cut(s)	18, 26, 57, 314
HphI	GGTGA	2 cut(s)	519, 768
Hpy166II	GTNNAC	3 cut(s)	171, 283, 792
Hpy188I	TCNGA	5 cut(s)	82, 207, 664, 672, 714
Hpy188III	TCNNGA	6 cut(s)	71, 261, 416, 503, 545, 655
Hpy8I	GTNNAC	3 cut(s)	171, 283, 792
Hpy99I	CGWCG	2 cut(s)	641, 811
HpyAV	CCTTC	4 cut(s)	24, 145, 323, 388
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4V	TGCA	6 cut(s)	429, 650, 682, 745, 754, 763
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 152, 751, 760
HpyF3I	CTNAG	3 cut(s)	204, 417, 521
Hsp92II	CATG	6 cut(s)	88, 412, 429, 658, 697, 739
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Ksp22I	TGATCA	1 cut(s)	630
Kzo9I	GATC	3 cut(s)	524, 630, 838
Lsp1109I	GCAGC	3 cut(s)	457, 694, 775
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	731
MalI	GATC	3 cut(s)	526, 632, 840
MboI	GATC	3 cut(s)	524, 630, 838
MboII	GAAGA	3 cut(s)	17, 571, 832
MluCI	AATT	5 cut(s)	271, 477, 564, 715, 772
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	6 cut(s)	86, 159, 326, 355, 541, 804
MreI	CGCCGGCG	1 cut(s)	25
MroNI	GCCGGC	1 cut(s)	25
MseI	TTAA	3 cut(s)	288, 464, 816
MslI	CAYNNNNRTG	3 cut(s)	434, 532, 740
MspA1I	CMGCKG	1 cut(s)	766
MspI	CCGG	4 cut(s)	18, 26, 57, 314
MspR9I	CCNGG	3 cut(s)	57, 125, 405
MvaI	CCWGG	2 cut(s)	125, 405
MvnI	CGCG	1 cut(s)	837
MwoI	GCNNNNNNNGC	4 cut(s)	120, 152, 751, 760
NaeI	GCCGGC	1 cut(s)	27
NciI	CCSGG	1 cut(s)	57
NdeI	CATATG	1 cut(s)	851
NdeII	GATC	3 cut(s)	524, 630, 838
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	6 cut(s)	88, 412, 429, 658, 697, 739
NmeAIII	GCCGAG	1 cut(s)	87
NspV	TTCGAA	1 cut(s)	327
OliI	CACNNNNGTG	1 cut(s)	434
PaeR7I	CTCGAG	1 cut(s)	545
PagI	TCATGA	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	7 cut(s)	52, 134, 246, 257, 412, 665, 690
PkrI	GCNGC	4 cut(s)	113, 447, 684, 765
Ple19I	CGATCG	1 cut(s)	841
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PpuMI	RGGWCCY	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	123, 403
PspGI	CCWGG	2 cut(s)	123, 403
PspPI	GGNCC	1 cut(s)	293
PspPPI	RGGWCCY	1 cut(s)	293
PvuI	CGATCG	1 cut(s)	841
PvuII	CAGCTG	1 cut(s)	766
RgaI	GCGATCGC	1 cut(s)	841
RsaI	GTAC	3 cut(s)	160, 240, 370
RsaNI	GTAC	3 cut(s)	159, 239, 369
RseI	CAYNNNNRTG	3 cut(s)	434, 532, 740
SaqAI	TTAA	3 cut(s)	288, 464, 816
SatI	GCNGC	4 cut(s)	112, 446, 683, 764
Sau3AI	GATC	3 cut(s)	524, 630, 838
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	3 cut(s)	57, 125, 405
SfaAI	GCGATCGC	1 cut(s)	841
Sfr274I	CTCGAG	1 cut(s)	545
SfuI	TTCGAA	1 cut(s)	327
SgfI	GCGATCGC	1 cut(s)	841
SgrAI	CRCCGGYG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	293
SlaI	CTCGAG	1 cut(s)	545
SmiMI	CAYNNNNRTG	3 cut(s)	434, 532, 740
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	5 cut(s)	271, 477, 564, 715, 772
SsiI	CCGC	5 cut(s)	111, 114, 121, 254, 835
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	3 cut(s)	55, 123, 403
TaaI	ACNGT	1 cut(s)	487
TaqI	TCGA	7 cut(s)	39, 72, 195, 260, 327, 490, 546
TasI	AATT	5 cut(s)	271, 477, 564, 715, 772
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	7 cut(s)	52, 134, 246, 257, 412, 665, 690
Tru1I	TTAA	3 cut(s)	288, 464, 816
Tru9I	TTAA	3 cut(s)	288, 464, 816
TscAI	CASTG	2 cut(s)	54, 436
TseI	GCWGC	3 cut(s)	445, 682, 763
TspDTI	ATGAA	5 cut(s)	25, 164, 425, 671, 842
TspRI	CASTG	2 cut(s)	54, 436
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	3 cut(s)	564, 715, 772
XhoI	CTCGAG	1 cut(s)	545
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.