Rorug07G0010900

Exosome complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006606
Physical Location & Seq
Forward (+)
903141 .. 905208
2068 bp
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UTR
Exon/CDS
Intron
Rorug07G0010900.1

Sequence Viewer

Length: 831 bp
ATGGGAAGGCTCCTCCGAACCAAGAGTGACTATGAAGATCTCAGAAATGCTCGCATATTACAAAACCAGGCTCGTTTGAATTCGCTGGGAGTTCATAAGACTCTCTCCGACCTCCACTCCATTTCTTCATCAGCAAAACCACCAAAGGCCCATGTCAGAAAGCACTGCAAGAAGGTCTATGATCTCACCTCTTTGCGCCGATCGGACCGATTGAAGGGAACAGCTACCACTCTAGCAACAACAACAACGCCAAATAATACTTCATCTCGACGATCAAGGTTGACAGTAACAGAAGTGGGTGGAAGTGGAGAGAGTGAGGAGGGGAATAAGAGGAGGCCTGCAAATGCGCCTTTTGTGGAAGTAAAGGGTTCGGAGATGCAGCTAGTTTCGTCTGAGTCTTGGGCTCGGCGTTGTGATAGCAAGAGCCGCGGCAGTGTCTATCATTCTGTTTTCGGGATTTGCTGCCATTTTTGCAGGCAAAAGAAGTTGTGTGGTGAAGAAGATTGCAAGCGATGTGGTACTCTTGATATGGACCAACCTTGCATTGGAAAAACAGATTGTTCAGTTTGTCACTCTACCAATGGTGTTCTTTGCCGGGGTTGTCTCAAGGTTAGGTATGGTGAAGAAATGGAGGAAGTGAGAGAAAACAAAGATTGGATGTGCCCACATTGCATAGAAGAAAAAGGAGTAAGACCTTACTGGATATGTAACAGCTCATTCTGCATGAAGAAGCGAAAGATGGCTCCGACTGGGATAGCAATATACAGATGTCAGGAGATGGGATACAAGTCAGTGGCACATCTGCTAATGGATGAACTTCAACGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
KH_6

Protein Analysis

276

Amino Acids

31.21

Weight (kDa)

9.3

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 148 - 269 3.4e-26 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 429
AciI CCGC 2 cut(s) 427, 429
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 520
AfiI CCNNNNNNNGG 2 cut(s) 214, 545
AgsI TTSAA 3 cut(s) 79, 214, 821
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 244, 276
AluBI AGCT 3 cut(s) 224, 382, 714
AluI AGCT 3 cut(s) 224, 382, 714
Alw26I GTCTC 1 cut(s) 608
AoxI GGCC 2 cut(s) 147, 335
ApeKI GCWGC 2 cut(s) 379, 462
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 2 cut(s) 198, 349
AspS9I GGNCC 3 cut(s) 148, 205, 532
AsuC2I CCSGG 1 cut(s) 596
AsuHPI GGTGA 3 cut(s) 178, 506, 632
AvaII GGWCC 2 cut(s) 205, 532
BaeGI GKGCMC 1 cut(s) 665
BanII GRGCYC 1 cut(s) 406
BbvI GCAGC 2 cut(s) 391, 449
BccI CCATC 2 cut(s) 733, 772
BciT130I CCWGG 1 cut(s) 68
BciVI GTATCC 1 cut(s) 776
BcnI CCSGG 1 cut(s) 596
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 2 cut(s) 233, 383
BfuI GTATCC 1 cut(s) 776
BglII AGATCT 1 cut(s) 37
BisI GCNGC 4 cut(s) 380, 427, 430, 463
BlsI GCNGC 4 cut(s) 381, 428, 431, 464
Bme1390I CCNGG 2 cut(s) 68, 596
Bme18I GGWCC 2 cut(s) 205, 532
BmgT120I GGNCC 3 cut(s) 148, 205, 532
BmiI GGNNCC 2 cut(s) 11, 744
BmrFI CCNGG 2 cut(s) 68, 596
BmrI ACTGGG 1 cut(s) 759
BmsI GCATC 1 cut(s) 366
BmuI ACTGGG 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 1 cut(s) 596
BsaJI CCNNGG 2 cut(s) 427, 595
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 545
Bse1I ACTGG 2 cut(s) 704, 754
Bse3DI GCAATG 1 cut(s) 667
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 427, 595
BseGI GGATG 2 cut(s) 663, 817
BseLI CCNNNNNNNGG 2 cut(s) 214, 545
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 2 cut(s) 55, 384
BseNI ACTGG 2 cut(s) 704, 754
BseRI GAGGAG 2 cut(s) 332, 346
BseSI GKGCMC 1 cut(s) 665
BseXI GCAGC 2 cut(s) 391, 449
BseYI CCCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 429
Bsh1285I CGRYCG 1 cut(s) 203
BshFI GGCC 2 cut(s) 149, 337
BsiEI CGRYCG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 595
BslI CCNNNNNNNGG 2 cut(s) 214, 545
BsmAI GTCTC 1 cut(s) 608
BsnI GGCC 2 cut(s) 149, 337
Bsp1286I GDGCHC 2 cut(s) 406, 665
Bsp143I GATC 4 cut(s) 37, 181, 200, 272
BspACI CCGC 2 cut(s) 427, 429
BspANI GGCC 2 cut(s) 149, 337
BspCNI CTCAG 2 cut(s) 54, 385
BspFNI CGCG 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 11, 744
BsrDI GCAATG 1 cut(s) 667
BsrI ACTGG 2 cut(s) 704, 754
BssECI CCNNGG 2 cut(s) 427, 595
BssMI GATC 4 cut(s) 37, 181, 200, 272
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 286
BstC8I GCNNGC 4 cut(s) 52, 339, 476, 509
BstDEI CTNAG 2 cut(s) 41, 393
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 2 cut(s) 663, 817
BstFNI CGCG 1 cut(s) 429
BstHHI GCGC 2 cut(s) 198, 349
BstKTI GATC 4 cut(s) 40, 184, 203, 275
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 4 cut(s) 37, 181, 200, 272
BstMCI CGRYCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 4 cut(s) 426, 471, 669, 720
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 66, 594
BstSLI GKGCMC 1 cut(s) 665
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 391, 449
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuI GTATCC 1 cut(s) 776
BsuRI GGCC 2 cut(s) 149, 337
BtgI CCRYGG 1 cut(s) 427
BtgZI GCGATG 1 cut(s) 526
BtsCI GGATG 2 cut(s) 663, 817
BtsI GCAGTG 2 cut(s) 163, 439
BtsIMutI CAGTG 3 cut(s) 163, 439, 798
Cac8I GCNNGC 4 cut(s) 52, 339, 476, 509
CfoI GCGC 2 cut(s) 198, 349
Cfr13I GGNCC 3 cut(s) 148, 205, 532
Cfr42I CCGCGG 1 cut(s) 430
CpoI CGGWCCG 1 cut(s) 205
Csp6I GTAC 1 cut(s) 519
CspCI CAANNNNNGTGG 2 cut(s) 496, 531
CspI CGGWCCG 1 cut(s) 205
CviAII CATG 2 cut(s) 152, 724
CviQI GTAC 1 cut(s) 519
DdeI CTNAG 2 cut(s) 41, 393
DpnI GATC 4 cut(s) 39, 183, 202, 274
DpnII GATC 4 cut(s) 37, 181, 200, 272
Eco147I AGGCCT 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 406
Eco47I GGWCC 2 cut(s) 205, 532
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 406
FaeI CATG 2 cut(s) 155, 727
FatI CATG 2 cut(s) 151, 723
Fnu4HI GCNGC 4 cut(s) 380, 427, 430, 463
FokI GGATG 2 cut(s) 670, 824
FriOI GRGCYC 1 cut(s) 406
Fsp4HI GCNGC 4 cut(s) 380, 427, 430, 463
FspBI CTAG 2 cut(s) 233, 383
GlaI GCGC 2 cut(s) 197, 348
GluI GCNGC 4 cut(s) 380, 427, 430, 463
GsaI CCCAGC 1 cut(s) 89
HaeIII GGCC 2 cut(s) 149, 337
HapII CCGG 1 cut(s) 595
HhaI GCGC 2 cut(s) 198, 349
Hin1II CATG 2 cut(s) 155, 727
Hin6I GCGC 2 cut(s) 196, 347
HinP1I GCGC 2 cut(s) 196, 347
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HinfI GANTC 2 cut(s) 100, 395
HpaII CCGG 1 cut(s) 595
HphI GGTGA 3 cut(s) 178, 506, 632
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 8 cut(s) 17, 44, 109, 158, 205, 373, 394, 747
Hpy188III TCNNGA 4 cut(s) 267, 454, 524, 773
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 1 cut(s) 273
HpyAV CCTTC 2 cut(s) 166, 208
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 8 cut(s) 168, 341, 379, 474, 507, 543, 672, 723
HpyF10VI GCNNNNNNNGC 4 cut(s) 426, 471, 669, 720
HpyF3I CTNAG 2 cut(s) 41, 393
Hsp92II CATG 2 cut(s) 155, 727
HspAI GCGC 2 cut(s) 196, 347
KspI CCGCGG 1 cut(s) 430
Kzo9I GATC 4 cut(s) 37, 181, 200, 272
LmnI GCTCC 2 cut(s) 15, 748
LpnPI CCDG 9 cut(s) 53, 71, 80, 351, 460, 608, 685, 735, 758
Lsp1109I GCAGC 2 cut(s) 391, 449
LweI GCATC 1 cut(s) 366
MaeI CTAG 2 cut(s) 233, 383
MaeIII GTNAC 4 cut(s) 26, 286, 569, 707
MalI GATC 4 cut(s) 39, 183, 202, 274
MboI GATC 4 cut(s) 37, 181, 200, 272
MboII GAAGA 7 cut(s) 47, 117, 509, 512, 635, 689, 739
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 406, 665
MluCI AATT 1 cut(s) 79
MlyI GAGTC 2 cut(s) 94, 404
MmeI TCCRAC 2 cut(s) 132, 770
MnlI CCTC 8 cut(s) 23, 122, 199, 310, 313, 324, 327, 625
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 1 cut(s) 595
MspR9I CCNGG 2 cut(s) 68, 596
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 4 cut(s) 426, 471, 669, 720
NciI CCSGG 1 cut(s) 596
NdeII GATC 4 cut(s) 37, 181, 200, 272
NlaIII CATG 2 cut(s) 155, 727
NlaIV GGNNCC 2 cut(s) 11, 744
NmeAIII GCCGAG 1 cut(s) 385
NmuCI GTSAC 2 cut(s) 26, 569
PceI AGGCCT 1 cut(s) 337
PkrI GCNGC 4 cut(s) 381, 428, 431, 464
Ple19I CGATCG 1 cut(s) 203
PleI GAGTC 2 cut(s) 94, 403
PpsI GAGTC 2 cut(s) 94, 403
Psp6I CCWGG 1 cut(s) 66
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 11, 744
PspPI GGNCC 3 cut(s) 148, 205, 532
PsuI RGATCY 1 cut(s) 37
PvuI CGATCG 1 cut(s) 203
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
Rsr2I CGGWCCG 1 cut(s) 205
RsrII CGGWCCG 1 cut(s) 205
SacII CCGCGG 1 cut(s) 430
SatI GCNGC 4 cut(s) 380, 427, 430, 463
Sau3AI GATC 4 cut(s) 37, 181, 200, 272
Sau96I GGNCC 3 cut(s) 148, 205, 532
SchI GAGTC 2 cut(s) 94, 404
ScrFI CCNGG 2 cut(s) 68, 596
SduI GDGCHC 2 cut(s) 406, 665
SfaNI GCATC 1 cut(s) 366
Sfr303I CCGCGG 1 cut(s) 430
SgrBI CCGCGG 1 cut(s) 430
SinI GGWCC 2 cut(s) 205, 532
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
Sse9I AATT 1 cut(s) 79
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 2 cut(s) 427, 429
SspMI CTAG 2 cut(s) 233, 383
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 2 cut(s) 66, 594
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 268
TaqII GACCGA 1 cut(s) 222
TasI AATT 1 cut(s) 79
TauI GCSGC 2 cut(s) 429, 432
TscAI CASTG 3 cut(s) 170, 439, 798
TseFI GTSAC 2 cut(s) 26, 569
TseI GCWGC 2 cut(s) 379, 462
Tsp45I GTSAC 2 cut(s) 26, 569
TspDTI ATGAA 6 cut(s) 48, 83, 117, 252, 740, 828
TspRI CASTG 3 cut(s) 170, 439, 798
VpaK11BI GGWCC 2 cut(s) 205, 532
XapI RAATTY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 542
XspI CTAG 2 cut(s) 233, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.