Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006606

Physical Location & Seq

Genomic Coordinates Reverse (-)

14851233 .. 14854187

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G174300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCAGAAAAAGCGACCGGTTCGCCGGCGAGCTTCGTCGACCAATCAGTAGTTCCAGGCGATGTGGTTCTTGACCTCACCAGCATGGCTAACCAGACTATCAAGCTCGGCGGTGGTCTTCGCCAGGATTGTGATGCAATAGCTGCGATGAAGGCTGGGACTTTGAAGTTTTCAAAGCCAAACAAATATTGGGTCGAAACCTCTCAGAAAAGGTATGTGCCTTGTGCGGGGGACTCTGTTCTTGGAATTGTGGCTGACTCTAAAGCAGATAATTTTCTGGTGGACATCAAGGGACCTACAATTGCATTTTTGCCTGTGCTTGCTTTCGAAGGAGGAACCAGGAGAAACATACCAAAGTTTGAGGTGGGTACATTGCTTTATGTCCGGGTAGTGAAGGCAAACCCGGGCATGAATCCTGAGTTATCATGCATTGATGCCAGTGGAAAAGCAGCAGAGTATGGCCCCCTTAAGGATGGCTACATGTTTGAATGTTCAACTGGCCTTTCAAAAATGCTGCTGAGCTCACCAAGATGTCCAGTTCTGGAGGCGCTTGGGAAGAATATTTCCTTTGAAACAGCAATTGGTTTAAATGGCCGTGTTTGGGTCAATGCTGGTTCACCATCTACGGTGACCGTTGTTGCTAATGCAATTATGAACGCGGAATCTCTGAGTGGGGTGCAGCAGAGAATTATGGTGGATAAACTAATTCAGAATTTGAAGTTATCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

KH_6

Protein Analysis

244

Amino Acids

25.76

Weight (kDa)

8.54

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25355 AT2G25355 AT4G32175
fragaria_vesca	FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270 FvH4_5g05270
malus_domestica	MD06G1174300.v1.1 MD06G1174500.v1.1
prunus_persica	Prupe.5G174300_v2.0.a1
pyrus_communis	pycom06g15560
rosa_chinensis	RchiOBHm_Chr7g0193601
rosa_laevigata	RLG00000004257
rosa_multiflora	Rmu_co8153970.1_g000001 Rmu_ssc0000035.1_g000008
rosa_roxburghii	Rroxscaffold_3G00261970
rosa_rugosa	Rorug07G0010700 Rorug07G0010800 Rorug07G0010900 Rorug07G0010900
rosa_samantha	Rh7AG137500 Rh7BG137700 Rh7CG141300 Rh7DG138900
rosa_wichuraiana	Rw7G011710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	1 cut(s)	659
AciI	CCGC	3 cut(s)	111, 227, 659
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	1 cut(s)	712
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	3 cut(s)	227, 469, 601
AflII	CTTAAG	1 cut(s)	467
AflIII	ACRYGT	1 cut(s)	480
AgeI	ACCGGT	1 cut(s)	17
AgsI	TTSAA	7 cut(s)	166, 174, 488, 495, 507, 572, 718
AjnI	CCWGG	3 cut(s)	55, 123, 338
AjuI	GAANNNNNNNTTGG	4 cut(s)	36, 68, 564, 596
AluBI	AGCT	4 cut(s)	33, 106, 143, 522
AluI	AGCT	4 cut(s)	33, 106, 143, 522
Alw21I	GWGCWC	1 cut(s)	524
Ama87I	CYCGRG	1 cut(s)	403
AoxI	GGCC	3 cut(s)	460, 499, 592
ApeKI	GCWGC	4 cut(s)	143, 449, 514, 679
ApoI	RAATTY	1 cut(s)	712
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
AsiGI	ACCGGT	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	2 cut(s)	293, 461
AsuC2I	CCSGG	3 cut(s)	386, 404, 405
AsuHPI	GGTGA	4 cut(s)	70, 516, 609, 640
AsuII	TTCGAA	1 cut(s)	327
AvaI	CYCGRG	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	524
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	524
BbvI	GCAGC	4 cut(s)	130, 461, 501, 691
BccI	CCATC	2 cut(s)	467, 628
BceAI	ACGGC	1 cut(s)	579
BciT130I	CCWGG	3 cut(s)	57, 125, 340
BcnI	CCSGG	3 cut(s)	386, 404, 405
BfoI	RGCGCY	1 cut(s)	551
BfrI	CTTAAG	1 cut(s)	467
BisI	GCNGC	4 cut(s)	144, 450, 515, 680
BlpI	GCTNAGC	1 cut(s)	518
BlsI	GCNGC	4 cut(s)	145, 451, 516, 681
Bme1390I	CCNGG	6 cut(s)	57, 125, 340, 386, 404, 405
Bme18I	GGWCC	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	403
BmgT120I	GGNCC	2 cut(s)	293, 461
BmiI	GGNNCC	3 cut(s)	294, 337, 463
BmrFI	CCNGG	6 cut(s)	57, 125, 340, 386, 404, 405
BmsI	GCATC	2 cut(s)	124, 424
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	563
Bpu1102I	GCTNAGC	1 cut(s)	518
Bpu14I	TTCGAA	1 cut(s)	327
BpuMI	CCSGG	3 cut(s)	386, 404, 405
BsaJI	CCNNGG	1 cut(s)	403
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 469, 601
Bse118I	RCCGGY	2 cut(s)	17, 25
Bse1I	ACTGG	3 cut(s)	438, 502, 536
Bse3DI	GCAATG	1 cut(s)	371
BseBI	CCWGG	3 cut(s)	57, 125, 340
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	3 cut(s)	227, 469, 601
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	4 cut(s)	218, 408, 509, 659
BseNI	ACTGG	3 cut(s)	438, 502, 536
BseXI	GCAGC	4 cut(s)	130, 461, 501, 691
BseYI	CCCAGC	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	698
Bsh1236I	CGCG	1 cut(s)	659
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	3 cut(s)	462, 501, 594
BshTI	ACCGGT	1 cut(s)	17
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	524
BsiHKCI	CYCGRG	1 cut(s)	403
BsiSI	CCGG	4 cut(s)	18, 26, 385, 404
BslFI	GGGAC	3 cut(s)	172, 245, 306
BslI	CCNNNNNNNGG	3 cut(s)	227, 469, 601
BsmFI	GGGAC	3 cut(s)	172, 245, 306
BsnI	GGCC	3 cut(s)	462, 501, 594
BsoBI	CYCGRG	1 cut(s)	403
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	524
Bsp1720I	GCTNAGC	1 cut(s)	518
BspACI	CCGC	3 cut(s)	111, 227, 659
BspANI	GGCC	3 cut(s)	462, 501, 594
BspCNI	CTCAG	4 cut(s)	217, 409, 510, 660
BspFNI	CGCG	1 cut(s)	659
BspLI	GGNNCC	3 cut(s)	294, 337, 463
BspT104I	TTCGAA	1 cut(s)	327
BspTI	CTTAAG	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	371
BsrFI	RCCGGY	2 cut(s)	17, 25
BsrI	ACTGG	3 cut(s)	438, 502, 536
BssAI	RCCGGY	2 cut(s)	17, 25
BssECI	CCNNGG	1 cut(s)	403
Bst2UI	CCWGG	3 cut(s)	57, 125, 340
Bst4CI	ACNGT	2 cut(s)	628, 634
BstAFI	CTTAAG	1 cut(s)	467
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	3 cut(s)	27, 31, 321
BstDEI	CTNAG	4 cut(s)	204, 417, 518, 668
BstEII	GGTNACC	1 cut(s)	628
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	1 cut(s)	659
BstH2I	RGCGCY	1 cut(s)	551
BstHHI	GCGC	1 cut(s)	550
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 143, 152
BstNI	CCWGG	3 cut(s)	57, 125, 340
BstNSI	RCATGY	1 cut(s)	484
BstPI	GGTNACC	1 cut(s)	628
BstSCI	CCNGG	6 cut(s)	55, 123, 338, 384, 402, 403
BstUI	CGCG	1 cut(s)	659
BstV1I	GCAGC	4 cut(s)	130, 461, 501, 691
BstV2I	GAAGAC	1 cut(s)	110
BsuRI	GGCC	3 cut(s)	462, 501, 594
BtgZI	GCGATG	2 cut(s)	75, 161
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	3 cut(s)	27, 31, 321
CfoI	GCGC	1 cut(s)	550
Cfr10I	RCCGGY	2 cut(s)	17, 25
Cfr13I	GGNCC	2 cut(s)	293, 461
Cfr9I	CCCGGG	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	369
CspAI	ACCGGT	1 cut(s)	17
CviAII	CATG	5 cut(s)	85, 409, 426, 481, 729
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	4 cut(s)	204, 417, 518, 668
DraI	TTTAAA	1 cut(s)	588
EaeI	YGGCCR	1 cut(s)	592
Ecl136II	GAGCTC	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	524
Eco47I	GGWCC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	522
Eco88I	CYCGRG	1 cut(s)	403
Eco91I	GGTNACC	1 cut(s)	628
EcoICRI	GAGCTC	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	293
EcoO65I	GGTNACC	1 cut(s)	628
EcoRII	CCWGG	3 cut(s)	55, 123, 338
EcoT22I	ATGCAT	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	524
FaeI	CATG	5 cut(s)	88, 412, 429, 484, 732
FaqI	GGGAC	3 cut(s)	172, 245, 306
FatI	CATG	5 cut(s)	84, 408, 425, 480, 728
FauI	CCCGC	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	4 cut(s)	144, 450, 515, 680
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	1 cut(s)	524
Fsp4HI	GCNGC	4 cut(s)	144, 450, 515, 680
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	4 cut(s)	144, 450, 515, 680
GsaI	CCCAGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	563
HaeII	RGCGCY	1 cut(s)	551
HaeIII	GGCC	3 cut(s)	462, 501, 594
HapII	CCGG	4 cut(s)	18, 26, 385, 404
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	5 cut(s)	88, 412, 429, 484, 732
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	4 cut(s)	233, 257, 412, 662
HpaII	CCGG	4 cut(s)	18, 26, 385, 404
HphI	GGTGA	4 cut(s)	70, 516, 609, 640
Hpy166II	GTNNAC	3 cut(s)	40, 283, 617
Hpy188I	TCNGA	3 cut(s)	207, 669, 711
Hpy188III	TCNNGA	3 cut(s)	71, 416, 542
Hpy8I	GTNNAC	3 cut(s)	40, 283, 617
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	145, 323, 388
HpyCH4III	ACNGT	2 cut(s)	628, 634
HpyCH4V	TGCA	5 cut(s)	137, 305, 429, 647, 679
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 143, 152
HpyF3I	CTNAG	4 cut(s)	204, 417, 518, 668
Hsp92II	CATG	5 cut(s)	88, 412, 429, 484, 732
HspAI	GCGC	1 cut(s)	548
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Lsp1109I	GCAGC	4 cut(s)	130, 461, 501, 691
LweI	GCATC	2 cut(s)	124, 424
MaeIII	GTNAC	1 cut(s)	628
MboII	GAAGA	2 cut(s)	110, 568
MfeI	CAATTG	2 cut(s)	300, 579
MhlI	GDGCHC	1 cut(s)	524
MluCI	AATT	8 cut(s)	246, 271, 300, 579, 648, 687, 705, 712
MlyI	GAGTC	2 cut(s)	227, 251
MnlI	CCTC	5 cut(s)	86, 211, 326, 355, 538
Mph1103I	ATGCAT	1 cut(s)	431
MreI	CGCCGGCG	1 cut(s)	25
MroNI	GCCGGC	1 cut(s)	25
MseI	TTAA	2 cut(s)	468, 587
MslI	CAYNNNNRTG	2 cut(s)	83, 529
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	4 cut(s)	18, 26, 385, 404
MspR9I	CCNGG	6 cut(s)	57, 125, 340, 386, 404, 405
MunI	CAATTG	2 cut(s)	300, 579
MvaI	CCWGG	3 cut(s)	57, 125, 340
MvnI	CGCG	1 cut(s)	659
MwoI	GCNNNNNNNGC	3 cut(s)	11, 143, 152
NaeI	GCCGGC	1 cut(s)	27
NciI	CCSGG	3 cut(s)	386, 404, 405
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	5 cut(s)	88, 412, 429, 484, 732
NlaIV	GGNNCC	3 cut(s)	294, 337, 463
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	628
NsiI	ATGCAT	1 cut(s)	431
NspI	RCATGY	1 cut(s)	484
NspV	TTCGAA	1 cut(s)	327
PciI	ACATGT	1 cut(s)	480
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	412, 662
PinAI	ACCGGT	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	145, 451, 516, 681
PleI	GAGTC	2 cut(s)	227, 251
PpsI	GAGTC	2 cut(s)	227, 251
PpuMI	RGGWCCY	1 cut(s)	293
PscI	ACATGT	1 cut(s)	480
Psp124BI	GAGCTC	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	3 cut(s)	55, 123, 338
PspEI	GGTNACC	1 cut(s)	628
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	3 cut(s)	55, 123, 338
PspN4I	GGNNCC	3 cut(s)	294, 337, 463
PspPI	GGNCC	2 cut(s)	293, 461
PspPPI	RGGWCCY	1 cut(s)	293
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	2 cut(s)	83, 529
SacI	GAGCTC	1 cut(s)	524
SalI	GTCGAC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	468, 587
SatI	GCNGC	4 cut(s)	144, 450, 515, 680
Sau96I	GGNCC	2 cut(s)	293, 461
SchI	GAGTC	2 cut(s)	227, 251
ScrFI	CCNGG	6 cut(s)	57, 125, 340, 386, 404, 405
SduI	GDGCHC	1 cut(s)	524
SetI	ASST	9 cut(s)	35, 78, 108, 145, 203, 215, 298, 366, 524
SfaNI	GCATC	2 cut(s)	124, 424
SfuI	TTCGAA	1 cut(s)	327
SgrAI	CRCCGGYG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	293
SmaI	CCCGGG	1 cut(s)	405
SmiMI	CAYNNNNRTG	2 cut(s)	83, 529
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	8 cut(s)	246, 271, 300, 579, 648, 687, 705, 712
SsiI	CCGC	3 cut(s)	111, 227, 659
SspI	AATATT	2 cut(s)	188, 562
SstI	GAGCTC	1 cut(s)	524
StyD4I	CCNGG	6 cut(s)	55, 123, 338, 384, 402, 403
TaaI	ACNGT	2 cut(s)	628, 634
TaqI	TCGA	3 cut(s)	39, 195, 327
TasI	AATT	8 cut(s)	246, 271, 300, 579, 648, 687, 705, 712
TfiI	GAWTC	2 cut(s)	412, 662
Tru1I	TTAA	2 cut(s)	468, 587
Tru9I	TTAA	2 cut(s)	468, 587
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	4 cut(s)	143, 449, 514, 679
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	3 cut(s)	164, 425, 668
TspMI	CCCGGG	1 cut(s)	403
TspRI	CASTG	1 cut(s)	445
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	1 cut(s)	712
XceI	RCATGY	1 cut(s)	484
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186
XmaI	CCCGGG	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.